CSPI04G12310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G12310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr4: 10639998 .. 10640609 (+)
RNA-Seq Expression	CSPI04G12310
Synteny	CSPI04G12310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGGTTAGTAATCGCGAAGAACTCCTCATTAAGACCAGCCATTCTGCACACATATCATGATTCAGTCCTAGGGGGTCATTCATGATTCTTAAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

mRNA sequence

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

Coding sequence (CDS)

ATGTACAAACCAGGGTTGGAAAACAAGGCAGCAGATGCCCTCTCGCGAATACCACCAACGGCCCATCTTAACCAACTAACCGCTCACACTTTGGTAGACATCAAAGTAATCAGAGAGGAAGTTGACAAAGATGAATATTTGAAGAATATCATCGACAGAATTCAGAGGGAGGAAGAGGTAAAGAACTACACTCTGCAACAAGGCATACTGAGATACAAAGGGAGAACATATAAACGAATGACAGGAGAGCTGTTTTGGGTGGGAATGAAGGCAGAAGTGCGAAGATATTGCGAAGAATGTATGACGTGCCAGCGGAATAAAACTTTAGCATTATCTCCAGCAGGATTATTGACTCCCCTCGAGGTCCCAAAGAGAGTATGGGAGGATATATCCATGGATTTTATTGAAGGACTGCCTAAATCAATGGGGTTTGATGTCATATTCGTAGTGGTGGATCGCTTCAGCAAATATGCGCATTTCCTCAGCCTTAAACATCCCTTTGACGCAAAGATGGTAGCTTAA

Protein sequence

MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEVKNYTLQQGILRYKGRTYKRMTGELFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVVVDRFSKYAHFLSLKHPFDAKMVA*

Homology

[Close]

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 2    YKPGLENKAADALSR-------IPPTAHLNQLTAHTLVDI-----KVIREEVDKDEYLKN 61
            Y+PG  N  ADALSR       IP  +  N +     + I       +  E   D  L N
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   IIDRIQREEEVKNYTLQQGIL------------RYKGRTYKRMTGE-------------- 121
            +++   +  E +N  L+ G+L                RT  +   E              
Sbjct: 877  LLNNEDKRVE-ENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 936

Query: 122  -----LFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGL 174
                   W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI  L
Sbjct: 937  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 996

[Close]

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 2    YKPGLENKAADALSR-------IPPTAHLNQLTAHTLVDI-----KVIREEVDKDEYLKN 61
            Y+PG  N  ADALSR       IP  +  N +     + I       +  E   D  L N
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   IIDRIQREEEVKNYTLQQGIL------------RYKGRTYKRMTGE-------------- 121
            +++   +  E +N  L+ G+L                RT  +   E              
Sbjct: 877  LLNNEDKRVE-ENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 936

Query: 122  -----LFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGL 174
                   W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI  L
Sbjct: 937  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 996

[Close]

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 2    YKPGLENKAADALSR-------IPPTAHLNQLTAHTLVDI-----KVIREEVDKDEYLKN 61
            Y+PG  N  ADALSR       IP  +  N +     + I       +  E   D  L N
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   IIDRIQREEEVKNYTLQQGIL------------RYKGRTYKRMTGE-------------- 121
            +++   +  E +N  L+ G+L                RT  +   E              
Sbjct: 877  LLNNEDKRVE-ENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 936

Query: 122  -----LFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGL 174
                   W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI  L
Sbjct: 937  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 996

[Close]

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 2    YKPGLENKAADALSR-------IPPTAHLNQLTAHTLVDI-----KVIREEVDKDEYLKN 61
            Y+PG  N  ADALSR       IP  +  N +     + I       +  E   D  L N
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   IIDRIQREEEVKNYTLQQGIL------------RYKGRTYKRMTGE-------------- 121
            +++   +  E +N  L+ G+L                RT  +   E              
Sbjct: 877  LLNNEDKRVE-ENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 936

Query: 122  -----LFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGL 174
                   W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI  L
Sbjct: 937  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 996

[Close]

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 63/215 (29.30%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 2    YKPGLENKAADALSR-------IPPTAHLNQLTAHTLVDI-----KVIREEVDKDEYLKN 61
            Y+PG  N  ADALSR       IP  +  N +     + I       +  E   D  L N
Sbjct: 817  YRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLN 876

Query: 62   IIDRIQREEEVKNYTLQQGIL------------RYKGRTYKRMTGE-------------- 121
            +++   +  E +N  L+ G+L                RT  +   E              
Sbjct: 877  LLNNEDKRVE-ENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTN 936

Query: 122  -----LFWVGMKAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGL 174
                   W G++ +++ Y + C TCQ NK+    P G L P+   +R WE +SMDFI  L
Sbjct: 937  IILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITAL 996

[Close]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL
Match: A0A5A7VG68 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00220 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.7e-64
Identity = 126/203 (62.07%), Postives = 149/203 (73.40%), Query Frame = 0


Query: 1   MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEV 60
           +YKPGLENKAADALSR+P    LNQLT   L+D+K+IREEV +D+YLK II RI   EEV
Sbjct: 309 LYKPGLENKAADALSRVPSVVQLNQLTVPALIDLKLIREEVAQDDYLKQIIKRITEREEV 368

Query: 61  KNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGMK 120
             YT+Q G+L+YKG                              RTYKR+TGELFW GMK
Sbjct: 369 PKYTMQHGMLQYKGRIVIAKSSTLIPTILHTYHDSVFEGHSGFLRTYKRLTGELFWQGMK 428

Query: 121 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +V++YCEEC  CQRNK+L+LSPAGLLTPLE+P R+W+ ISMDFIEGLPK+ GFDVI VV
Sbjct: 429 GDVQKYCEECTVCQRNKSLSLSPAGLLTPLEIPSRIWDYISMDFIEGLPKAAGFDVILVV 488

[Close]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL
Match: A0A5A7T5M0 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00160 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 4.2e-58
Identity = 112/203 (55.17%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 1   MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEV 60
           +YKPGL+N+  DALSR+P + HLNQLTA  L+++K+I+EEV+KD+  K I+ +++   EV
Sbjct: 480 VYKPGLKNETVDALSRVPSSIHLNQLTALALINLKIIKEEVEKDKQFKEILMKLRSGVEV 539

Query: 61  KNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGMK 120
            NY LQQ +L+YKG                              RTYKR+TGELFW GMK
Sbjct: 540 HNYALQQEMLQYKGRLVIANKSTLIPAILYTYHNFVFGGHSGFLRTYKRLTGELFWHGMK 599

Query: 121 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +V+++CEEC+ CQ NKTL+LSPAGLLTPLE+P ++W+DI MDFI+GLPK+ G +VIFV+
Sbjct: 600 GDVQKHCEECIVCQINKTLSLSPAGLLTPLEIPTKIWDDILMDFIKGLPKAAGLEVIFVI 659

[Close]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.1e-58
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1076 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1135

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1136 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1195

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1196 KKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1255

[Close]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL
Match: A0A5A7U2S1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00940 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.1e-58
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1076 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1135

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1136 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1195

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1196 KKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1255

[Close]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 7.1e-58
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1016 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1075

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1076 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1135

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1136 KKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1195

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: KAA0066077.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYJ99820.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 255.4 bits (651), Expect = 3.6e-64
Identity = 126/203 (62.07%), Postives = 149/203 (73.40%), Query Frame = 0


Query: 1   MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEV 60
           +YKPGLENKAADALSR+P    LNQLT   L+D+K+IREEV +D+YLK II RI   EEV
Sbjct: 309 LYKPGLENKAADALSRVPSVVQLNQLTVPALIDLKLIREEVAQDDYLKQIIKRITEREEV 368

Query: 61  KNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGMK 120
             YT+Q G+L+YKG                              RTYKR+TGELFW GMK
Sbjct: 369 PKYTMQHGMLQYKGRIVIAKSSTLIPTILHTYHDSVFEGHSGFLRTYKRLTGELFWQGMK 428

Query: 121 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +V++YCEEC  CQRNK+L+LSPAGLLTPLE+P R+W+ ISMDFIEGLPK+ GFDVI VV
Sbjct: 429 GDVQKYCEECTVCQRNKSLSLSPAGLLTPLEIPSRIWDYISMDFIEGLPKAAGFDVILVV 488

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: KAA0036907.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK27344.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 8.6e-58
Identity = 112/203 (55.17%), Postives = 148/203 (72.91%), Query Frame = 0


Query: 1   MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREEEV 60
           +YKPGL+N+  DALSR+P + HLNQLTA  L+++K+I+EEV+KD+  K I+ +++   EV
Sbjct: 480 VYKPGLKNETVDALSRVPSSIHLNQLTALALINLKIIKEEVEKDKQFKEILMKLRSGVEV 539

Query: 61  KNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGMK 120
            NY LQQ +L+YKG                              RTYKR+TGELFW GMK
Sbjct: 540 HNYALQQEMLQYKGRLVIANKSTLIPAILYTYHNFVFGGHSGFLRTYKRLTGELFWHGMK 599

Query: 121 AEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFVV 174
            +V+++CEEC+ CQ NKTL+LSPAGLLTPLE+P ++W+DI MDFI+GLPK+ G +VIFV+
Sbjct: 600 GDVQKHCEECIVCQINKTLSLSPAGLLTPLEIPTKIWDDILMDFIKGLPKAAGLEVIFVI 659

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1016 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1075

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1076 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1135

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1136 KKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1195

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1076 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1135

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1136 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1195

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1196 KKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1255

[Close]

BLAST of CSPI04G12310 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 119/204 (58.33%), Postives = 145/204 (71.08%), Query Frame = 0


Query: 1    MYKPGLENKAADALSRIPPTAHLNQLTAHTLVDIKVIREEVDKDEYLKNIIDRIQREE-E 60
            +YKPGLENKAADALSRI PTAHLNQLTA  L+D++VI++EV KD  L+ I+  I+ +  E
Sbjct: 1016 LYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIE 1075

Query: 61   VKNYTLQQGILRYKG------------------------------RTYKRMTGELFWVGM 120
            + +YT  QGIL++KG                              RTYKRM GEL+W GM
Sbjct: 1076 IPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGM 1135

Query: 121  KAEVRRYCEECMTCQRNKTLALSPAGLLTPLEVPKRVWEDISMDFIEGLPKSMGFDVIFV 174
            K +V++YCEECM CQ+NK+ ALSPAGLL PLE+P  +W DISMDFIEGLPKS G++VI V
Sbjct: 1136 KRDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILV 1195

The following BLAST results are available for this feature:

BLAST of CSPI04G12310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.2e-14	29.30	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.2e-14	29.30	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.2e-14	29.30	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.2e-14	29.30	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.2e-14	29.30	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI04G12310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VG68	1.7e-64	62.07	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T5M0	4.2e-58	55.17	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3CXB1	7.1e-58	58.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U2S1	7.1e-58	58.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DI73	7.1e-58	58.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI04G12310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066077.1	3.6e-64	62.07	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYJ99820.1 Transposon T...	[more]
KAA0036907.1	8.6e-58	55.17	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK27344.1 Tran...	[more]
TYK23090.1	1.5e-57	58.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15990.1	1.5e-57	58.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049776.1	1.5e-57	58.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G12310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 75..108 e-value: 8.5E-9 score: 35.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 115..173 e-value: 1.6E-9 score: 39.4
None	No IPR available	GENE3D	1.10.340.70		coord: 73..107 e-value: 3.6E-6 score: 29.1
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 2..151
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..151
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 119..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12310.1	CSPI04G12310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding