CSPI04G12230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G12230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	precursor of CEP12
Location	Chr4: 10570496 .. 10570771 (+)
RNA-Seq Expression	CSPI04G12230
Synteny	CSPI04G12230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACAGAAGCTTACATTTGAATAGTTTCTTTCCCCTTGTCGCTCTCCTCCTTCTCCTCCTCCTTCTTCACTCTCTTTTCGTAACATCATCAAGGCCATTGCATGGCATTCATCCCCATAATCCCCATGCTATAACACCTCCTGCTCCGGTATCATTGGAGACATCGTTCTCCATAAACCGGTATAAATATGTCGAAACAGATGCATTTCGACCGACCTCGCCCGGACATAGCCCTGGGGTTGGCCACAATGAGCCACCAGGTAAACCGTAG

mRNA sequence

ATGGCTCACAGAAGCTTACATTTGAATAGTTTCTTTCCCCTTGTCGCTCTCCTCCTTCTCCTCCTCCTTCTTCACTCTCTTTTCGTAACATCATCAAGGCCATTGCATGGCATTCATCCCCATAATCCCCATGCTATAACACCTCCTGCTCCGGTATCATTGGAGACATCGTTCTCCATAAACCGGTATAAATATGTCGAAACAGATGCATTTCGACCGACCTCGCCCGGACATAGCCCTGGGGTTGGCCACAATGAGCCACCAGGTAAACCGTAG

Coding sequence (CDS)

ATGGCTCACAGAAGCTTACATTTGAATAGTTTCTTTCCCCTTGTCGCTCTCCTCCTTCTCCTCCTCCTTCTTCACTCTCTTTTCGTAACATCATCAAGGCCATTGCATGGCATTCATCCCCATAATCCCCATGCTATAACACCTCCTGCTCCGGTATCATTGGAGACATCGTTCTCCATAAACCGGTATAAATATGTCGAAACAGATGCATTTCGACCGACCTCGCCCGGACATAGCCCTGGGGTTGGCCACAATGAGCCACCAGGTAAACCGTAG

Protein sequence

MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNPHAITPPAPVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP*

Homology

[Close]

BLAST of CSPI04G12230 vs. ExPASy Swiss-Prot
Match: P0DN99 (Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 9  NSFFPLVALLLLLLLLHSLFVTSS---RPLHGIHPHNPHAITPPAPVSLETS-FSINRYK 68
          NS   L   +L LL+LH  F T++   +P+    P +    +PP+P   +   F IN YK
Sbjct: 6  NSIVALSFFMLFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYK 65

Query: 69 YVETDAFRPTSPGHSPGVGHNEPPGKP 92
           +E  AFRPT  G S G+GH +PPG P
Sbjct: 66 NIEQTAFRPTGQGPSQGIGHKDPPGAP 92

[Close]

BLAST of CSPI04G12230 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.9e-05
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 47 TPPAPVSLETSF--SINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
          +PP P   +  +   INR+K +E DAFRPT  G S G+GH  PPG P
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

[Close]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 6.9e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNPHAITPPAPVSLETSFSI 60
          MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNPHAITPPAPVSLETSFSI
Sbjct: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNPHAITPPAPVSLETSFSI 60

Query: 61 NRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
          NRYKYVETDAFRPTSPGHSPGVGHNEPPGKP
Sbjct: 61 NRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

[Close]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL
Match: W9S854 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 18 LLLLLLLHSL-FVTSSRPLHGIHP-----HNPHAITPPAPVSLETSFSINRYKYVETDAF 77
          + +LLLLHS+ F +SSRPLH +HP       P   + P P S +  FS+N YK  ETDAF
Sbjct: 14 MAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPSTKW-FSVNHYKIAETDAF 73

Query: 78 RPTSPGHSPGVGHNEPP 89
          RPT+PGHSPGVGH  PP
Sbjct: 74 RPTAPGHSPGVGHGSPP 89

[Close]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL
Match: A0A5C7HCP5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 9  NSFFPLVALLLLLLLLHSLFVTSSRPLHGIH----PHNPHAITPPAPVSLETSFSINRYK 68
          +  F L  L++LLL  +   +++SRPL   H    P +  ++  P P S+   ++INRYK
Sbjct: 3  DKIFTLSFLVVLLLQNNFELISASRPLGVFHPPAIPRSGLSMNKPKPPSIH-YYTINRYK 62

Query: 69 YVETDAFRPTSPGHSPGVGHNEPPGKP 92
            E +AFRPTSPGHSPGVGHNEPP  P
Sbjct: 63 KTEAEAFRPTSPGHSPGVGHNEPPATP 88

[Close]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL
Match: A0A1R3KLK5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01186 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.5e-09
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 45 AITPPAPVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
          AI PP   S+   F INRYK  ETDAFRPTSPGHSPGVGHN PP  P
Sbjct: 31 AIRPP---SISVGFRINRYKMTETDAFRPTSPGHSPGVGHNSPPSSP 74

[Close]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL
Match: F6HJ28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00620 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.2e-09
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 2  AHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHPHNP-HAITPPAPVSLETSFSI 61
          ++  +H+ S F    ++ L+L  H   +T+SRPL    P  P  A     P+S+   F I
Sbjct: 3  SYHRIHMLSLF----IIPLILQQHVELITASRPLEVYSPAIPGDASRKLEPLSIH-EFVI 62

Query: 62 NRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
          NR+K VETDA+RPTSPGHSPGVGH  PPG P
Sbjct: 63 NRFKMVETDAYRPTSPGHSPGVGHLAPPGAP 88

[Close]

BLAST of CSPI04G12230 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 7.1e-19
Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 2  AHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP-----------HNPHAITPPA 61
          A RSLH  +  PL+      LLLHSL VT SRPLHGI P            + HAI PPA
Sbjct: 3  ARRSLHFINLLPLIT-----LLLHSLSVT-SRPLHGIDPLPSAAAMAVVSAHCHAILPPA 62

Query: 62 PVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGK 91
          PVS   +FSINRYKYVETDAFRPT+PGHSPGVGH +PPG+
Sbjct: 63 PVS-TLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPPGR 95

[Close]

BLAST of CSPI04G12230 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-13
Identity = 55/96 (57.29%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLFVTSSRPLHGIHP-------HNPHAITPPAPVS 60
          M  RS HL        L L++ LL+ L VT SRP H I+         N HAITPPA +S
Sbjct: 1  MPLRSFHL--------LALVVFLLYFLSVT-SRPRHDIYSPAIVVGFGNRHAITPPASMS 60

Query: 61 LETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPG 90
             +FSINRYKYVE DAFRPTSPGHSPGVGH +PPG
Sbjct: 61 ---TFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPG 84

[Close]

BLAST of CSPI04G12230 vs. NCBI nr
Match: EXC31035.1 (hypothetical protein L484_021337 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 18 LLLLLLLHSL-FVTSSRPLHGIHP-----HNPHAITPPAPVSLETSFSINRYKYVETDAF 77
          + +LLLLHS+ F +SSRPLH +HP       P   + P P S +  FS+N YK  ETDAF
Sbjct: 14 MAVLLLLHSIGFTSSSRPLHVVHPPVNVLGGPPYKSKPRPPSTKW-FSVNHYKIAETDAF 73

Query: 78 RPTSPGHSPGVGHNEPP 89
          RPT+PGHSPGVGH  PP
Sbjct: 74 RPTAPGHSPGVGHGSPP 89

[Close]

BLAST of CSPI04G12230 vs. NCBI nr
Match: KAF8033451.1 (hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 48/97 (49.48%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MAHRSLHLNSFFPLVALLLLLLLLHSLF--VTSSRPLHGIHP----HNPHAITPPAPVSL 60
          MA ++    S+F     LL+LLLLH       +SRPL   HP         +  P P S+
Sbjct: 1  MACKTFTTKSWF-----LLVLLLLHKNLDKTQASRPLEIFHPPRVIPGKSDLMKPRPPSI 60

Query: 61 ETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
            +  INRYK  ET+AFRPTSPGHSPGVGHNEPPG P
Sbjct: 61 GRTV-INRYKKTETEAFRPTSPGHSPGVGHNEPPGAP 91

[Close]

BLAST of CSPI04G12230 vs. NCBI nr
Match: KAG6778416.1 (hypothetical protein POTOM_018280 [Populus tomentosa])

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-09
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 12  FPLVALLLLLLLLHSLF--VTSSRPLHGIHPHNPHAITPPAPVSL-ETSFSINRYKYVET 71
           F L    ++LLLLH  F    +SRPLH   P  P + + P P  + +  + INRYK +E+
Sbjct: 40  FKLTFFTVVLLLLHQHFDLTAASRPLHIHSPAIPGSGSEPPPTDVHDRWYRINRYKNLES 99

Query: 72  DAFRPTSPGHSPGVGHNEPPGKP 92
           DAFRPT+PGHSPGVGH  PP  P
Sbjct: 100 DAFRPTTPGHSPGVGHENPPAAP 122

[Close]

BLAST of CSPI04G12230 vs. TAIR 10
Match: AT1G31670.1 (Copper amine oxidase family protein )

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-07
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 9  NSFFPLVALLLLLLLLHSLFVTSS---RPLHGIHPHNPHAITPPAPVSLETS-FSINRYK 68
          NS   L   +L LL+LH  F T++   +P+    P +    +PP+P   +   F IN YK
Sbjct: 6  NSIVALSFFMLFLLVLHLHFETTTAARKPVRVFGPPSSIEWSPPSPPKDDFEWFEINIYK 65

Query: 69 YVETDAFRPTSPGHSPGVGHNEPP 89
           +E  AFRPT  G S G+GH +PP
Sbjct: 66 NIEQTAFRPTGQGPSQGIGHKDPP 89

[Close]

BLAST of CSPI04G12230 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.6e-06
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 47 TPPAPVSLETSF--SINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 92
          +PP P   +  +   INR+K +E DAFRPT  G S G+GH  PPG P
Sbjct: 40 SPPEPPKDDFVWYHKINRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

The following BLAST results are available for this feature:

BLAST of CSPI04G12230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN99	5.0e-07	40.23	Precursor of CEP12 OS=Arabidopsis thaliana OX=3702 GN=CEP12 PE=2 SV=1	[more]
Q3EBM6	7.9e-05	48.94	Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1	[more]

BLAST of CSPI04G12230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWX0	6.9e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1	[more]
W9S854	4.5e-11	55.84	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021337 PE=3 SV=1	[more]
A0A5C7HCP5	3.2e-09	47.13	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_019865 PE=3 SV=1	[more]
A0A1R3KLK5	5.5e-09	70.21	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01186 PE=4 ...	[more]
F6HJ28	7.2e-09	47.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00620 PE=3 SV=...	[more]

BLAST of CSPI04G12230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591857.1	7.1e-19	61.00	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6608019.1	4.5e-13	57.29	Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
EXC31035.1	9.3e-11	55.84	hypothetical protein L484_021337 [Morus notabilis]	[more]
KAF8033451.1	3.9e-09	49.48	hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata]	[more]
KAG6778416.1	5.1e-09	49.40	hypothetical protein POTOM_018280 [Populus tomentosa]	[more]

BLAST of CSPI04G12230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31670.1	5.1e-07	39.29	Copper amine oxidase family protein	[more]
AT2G35612.1	5.6e-06	48.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..91
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 10..90
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 10..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G12230.1	CSPI04G12230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development