CSPI04G11940 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G11940
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 10250849 .. 10251284 (+)
RNA-Seq Expression	CSPI04G11940
Synteny	CSPI04G11940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTCTGTTTACACACATGAATTTACTCACAACTTTCTTCCATAGTTGATGCTATATGCTTTATAAGCACATACTCATCATCTATACTCTCATTCAAAAGTTCACTCCAGTGCTTTACACTCTACCATCTATGTTTTATGTCATATGTTCGCTATCTGATGTCAGAAAAATTCATAATATAAAAAGCAAGAAGAAACGTAGAAAAAGAAGGGAAAAAAGGAAAAAAGGAAAAAAGTGGAAGGAGAAATGCAAAAGGAAAAAGAACGAGAAGAAGAGATGCTACAGAATGAAGAATGATGCATTTGGAGTTAAGATGGTAATATCATATGGTGATACCATAACCAAAACGAAATTTCTTTTGTTGATTTTGAAACTTACTTGGGGTTAATTTTCCTTCAAAGTCTCCCTCCATGCAATTATTCTTTAGGTTAC

mRNA sequence

ATGGTCCTCTGTTTACACACATGAATTTACTCACAACTTTCTTCCATAGTTGATGCTATATGCTTTATAAGCACATACTCATCATCTATACTCTCATTCAAAAGTTCACTCCAGTGCTTTACACTCTACCATCTATGTTTTATGTCATATGTTCGCTATCTGATGTCAGAAAAATTCATAATATAAAAAGCAAGAAGAAACGTAGAAAAAGAAGGGAAAAAAGGAAAAAAGGAAAAAAGTGGAAGGAGAAATGCAAAAGGAAAAAGAACGAGAAGAAGAGATGCTACAGAATGAAGAATGATGCATTTGGAGTTAAGATGGTAATATCATATGGTGATACCATAACCAAAACGAAATTTCTTTTGTTGATTTTGAAACTTACTTGGGGTTAATTTTCCTTCAAAGTCTCCCTCCATGCAATTATTCTTTAGGTTAC

Coding sequence (CDS)

ATGCTTTATAAGCACATACTCATCATCTATACTCTCATTCAAAAGTTCACTCCAGTGCTTTACACTCTACCATCTATGTTTTATGTCATATGTTCGCTATCTGATGTCAGAAAAATTCATAATATAAAAAGCAAGAAGAAACGTAGAAAAAGAAGGGAAAAAAGGAAAAAAGGAAAAAAGTGGAAGGAGAAATGCAAAAGGAAAAAGAACGAGAAGAAGAGATGCTACAGAATGAAGAATGATGCATTTGGAGTTAAGATGGTAATATCATATGGTGATACCATAACCAAAACGAAATTTCTTTTGTTGATTTTGAAACTTACTTGGGGTTAA

Protein sequence

MLYKHILIIYTLIQKFTPVLYTLPSMFYVICSLSDVRKIHNIKSKKKRRKRREKRKKGKKWKEKCKRKKNEKKRCYRMKNDAFGVKMVISYGDTITKTKFLLLILKLTWG*

Homology

The following BLAST results are available for this feature:

BLAST of CSPI04G11940 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G11940 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G11940 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G11940 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11940.1	CSPI04G11940.1	mRNA