CSPI04G11930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G11930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 10249374 .. 10250340 (-)
RNA-Seq Expression	CSPI04G11930
Synteny	CSPI04G11930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTAGGGATCACAAATCACAACCAACCAAGTGTCACAGTTTTCTGTCTATAAATATAAGACTTTGATCTTCATTTCCATTGCACACAGAAAGGAAGAAGAAAAAAGAAAAGAAAAAAAAGAAGAAGAAGAAAGAAAACCTTTAAGAAACTCTCTCTTCTTTTGGGTAAAAGTTAGGGTTTTTTAGGTTTGTGGTCAGCCATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAAACATTTATCAACCCCATGATCAGTTGGTTTATCATGGGCTAGCTCTACTCTTCAAAAGGAAAAAAAAAATGTTTGCTTTTTGTTCTTTTTCCCTCTTTGATTCTTTTGTTTTTCTACGGAAGTACTTCGTGGCTTTTTTTAATAGTTTTCGAAAGTTTTTATTATGAGTATGTGAATAAGTTTCATTCTCTATATAATGGTAAAGAGGATGTTTCGATTGCCATTTTGGAGGGGATTGAAAAACTCTTGAGGCCGTTTTGGAATTGCCAATGGCTGTATGATCCATATGAGTCATAAAATAATGAACAATTATTATTTATTATTTAACACTTTATATATATTTTAAAAAAAATAACTATTGTAAATGGTCAAATTTGCTAAAAATATTTACAAGGTATTGATAGATACTAATAGTGTCAATTCCTTTGTTCAATTATGCTGTTCTTCTTTTTATAGTCTTCCTTCTAGATTTATATTATTGAAGCACCATTTGATGACTACTGTATTTAGTT

mRNA sequence

AACTAGGGATCACAAATCACAACCAACCAAGTGTCACAGTTTTCTGTCTATAAATATAAGACTTTGATCTTCATTTCCATTGCACACAGAAAGGAAGAAGAAAAAAGAAAAGAAAAAAAAGAAGAAGAAGAAAGAAAACCTTTAAGAAACTCTCTCTTCTTTTGGGTAAAAGTTAGGGTTTTTTAGGTTTGTGGTCAGCCATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAAACATTTATCAACCCCATGATCAGTTGGTTTATCATGGGCTAGCTCTACTCTTCAAAAGGAAAAAAAAAATGTTTGCTTTTTGTTCTTTTTCCCTCTTTGATTCTTTTGTTTTTCTACGGAAGTACTTCGTGGCTTTTTTTAATAGTTTTCGAAAGTTTTTATTATGAGTATGTGAATAAGTTTCATTCTCTATATAATGGTAAAGAGGATGTTTCGATTGCCATTTTGGAGGGGATTGAAAAACTCTTGAGGCCGTTTTGGAATTGCCAATGGCTGTATGATCCATATGAGTCATAAAATAATGAACAATTATTATTTATTATTTAACACTTTATATATATTTTAAAAAAAATAACTATTGTAAATGGTCAAATTTGCTAAAAATATTTACAAGGTATTGATAGATACTAATAGTGTCAATTCCTTTGTTCAATTATGCTGTTCTTCTTTTTATAGTCTTCCTTCTAGATTTATATTATTGAAGCACCATTTGATGACTACTGTATTTAGTT

Coding sequence (CDS)

ATGGCTGGGCTCCAGTACAACTTCTTTCCCACTGATCTCCTTTACCCTAAACCATCTTCTTCTTCTTCTTCCTCAGAAGCCATCAACAGGGCAAGTGTGACCTTCAAAACCCCTCTAAGAGGCAATAAAGGTGATCAAGAAGATATTGATCATGGTGATGAACCCAAGAGTCGTTTGATGATCTCTCAAAAGGTTGATAGATCACCATTGATTCTCAAGCATCAAATCAAGAGTACTTCTTCTTCAACTTTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLMISQKVDRSPLILKHQIKSTSSSTF*

Homology

[Close]

BLAST of CSPI04G11930 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.3e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 ISQKVDRSPLILKHQIKSTSSSTF 85
          ISQKVDRSPLILKHQIKSTSSSTF
Sbjct: 61 ISQKVDRSPLILKHQIKSTSSSTF 84

[Close]

BLAST of CSPI04G11930 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKT LRGNKG +EDIDHGDE KSRL 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKG-EEDIDHGDERKSRLF 60

Query: 61 ISQKVDRSPLILKHQIKSTSSS 83
            +  DRSPLILKHQ KSTSS+
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

[Close]

BLAST of CSPI04G11930 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.7e-28
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKT LRGNKG +EDIDHGDE KSRL 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKG-EEDIDHGDERKSRLF 60

Query: 61 ISQKVDRSPLILKHQIKSTSSS 83
            +  DRSPLILKHQ KSTSS+
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

[Close]

BLAST of CSPI04G11930 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-38
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 ISQKVDRSPLILKHQIKSTSSSTF 85
          ISQKVDRSPLILKHQIKSTSSSTF
Sbjct: 61 ISQKVDRSPLILKHQIKSTSSSTF 84

[Close]

BLAST of CSPI04G11930 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 7.7e-28
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKT LRGNKG +EDIDHGDE KSRL 
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKG-EEDIDHGDERKSRLF 60

Query: 61 ISQKVDRSPLILKHQIKSTSSS 83
            +  DRSPLILKHQ KSTSS+
Sbjct: 61 SQKVADRSPLILKHQSKSTSST 81

[Close]

BLAST of CSPI04G11930 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 63/89 (70.79%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGD 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRASVTFK P+RGN+ D+ED DHGD
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQ-DEED-DHGD 60

Query: 61 EPKSRLMISQKVDRSPLILKHQIKSTSSS 83
            KS  +  QK DRSPLILKHQ+K+ SS+
Sbjct: 61 GAKS--LSIQKGDRSPLILKHQVKNDSST 85

The following BLAST results are available for this feature:

BLAST of CSPI04G11930 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G11930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWJ2	2.3e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1	[more]
A0A5A7V9D3	3.7e-28	85.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC02	3.7e-28	85.37	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of CSPI04G11930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53975.1	4.8e-38	100.00	hypothetical protein Csa_018873 [Cucumis sativus]	[more]
ADN34001.1	7.7e-28	85.37	hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote...	[more]
KAG6603410.1	4.5e-20	70.79	hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI04G11930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11930.1	CSPI04G11930.1	mRNA