CSPI04G11780 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G11780
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 10054773 .. 10055054 (-)
RNA-Seq ExpressionCSPI04G11780
SyntenyCSPI04G11780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG

mRNA sequence

ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG

Coding sequence (CDS)

ATGGCAACAGCGGATAAATTCTCTTTTCTAGGGCACCGTGAGCGACGTGTCGGCGATCTATTCGACAAAACAACTTCCGAACCTCTTTTTGTTATTTCCACTTCTTCTGGATTTGGTGCGTACGAGGAAACCTTTACTCCACGCCTCACAAAGCGCGTGAATTCAACGAGCTCTCAACTATTGACACGTATGGTAAATCGCGGACTCGGGATTCTGTGTCGAACGCTAACAAGTCTTCGATTGATTTACCATAGCGACATGTCCAGTGCAGAGAGCGAGTAG

Protein sequence

MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTSSQLLTRMVNRGLGILCRTLTSLRLIYHSDMSSAESE*
Homology
BLAST of CSPI04G11780 vs. ExPASy TrEMBL
Match: A0A0A0KWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTSSQL 60
          MATADKFSFLGHRERRVGDLFDKTTSEPLFVIST SGFGAYEET TPRL KRVNSTSSQL
Sbjct: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTPSGFGAYEETSTPRLIKRVNSTSSQL 60

Query: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSAESE 94
          LTRMVNRGLGILCRTLTSLRLIYHSDMSS ESE
Sbjct: 61 LTRMVNRGLGILCRTLTSLRLIYHSDMSSGESE 93

BLAST of CSPI04G11780 vs. ExPASy TrEMBL
Match: A0A5D3E1F8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00120 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTS 58
          MAT DKFSFLGHRE+RVGDLFDKTTS+ LFVISTSSGFGAYEE+F+PR  KRVNSTS
Sbjct: 37 MATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSSGFGAYEESFSPREMKRVNSTS 93

BLAST of CSPI04G11780 vs. NCBI nr
Match: TYK29421.1 (hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 1  MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTS 58
          MAT DKFSFLGHRE+RVGDLFDKTTS+ LFVISTSSGFGAYEE+F+PR  KRVNSTS
Sbjct: 37 MATGDKFSFLGHREQRVGDLFDKTTSKRLFVISTSSGFGAYEESFSPREMKRVNSTS 93

BLAST of CSPI04G11780 vs. NCBI nr
Match: KAG6600251.1 (hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 44/82 (53.66%), Postives = 48/82 (58.54%), Query Frame = 0

Query: 1   MATADKFSFLGHRERRVGDLFDKTTSEPLFVISTSSGFGAYEETFTPRLTKRVNSTSSQL 60
           M TA+KF  L  RE RVGDLFDKTTS  L   ST  GFG YEE+  P   +RV ST   +
Sbjct: 25  METANKFPLLWRRELRVGDLFDKTTSMRLSTSSTPPGFGEYEESSAPLEKERVESTRDVV 84

Query: 61  LTRMVNRGLGILCRTLTSLRLI 83
           L R  N  LGI CR  T   LI
Sbjct: 85  LKRTTNHRLGIPCRRPTDSDLI 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWH41.2e-4095.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G181210 PE=4 SV=1[more]
A0A5D3E1F83.0e-1885.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK29421.16.1e-1885.96hypothetical protein E5676_scaffold655G00120 [Cucumis melo var. makuwa][more]
KAG6600251.12.8e-1053.66hypothetical protein SDJN03_05484, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G11780.1CSPI04G11780.1mRNA