CSPI04G11060 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G11060
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ATP-dependent DNA helicase
Location	Chr4: 9369416 .. 9372765 (-)
RNA-Seq Expression	CSPI04G11060
Synteny	CSPI04G11060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCATTTTTATGAATGGTACTGTTTAACGTATGGTGTACAAAATTGTATTCTTGTGCAGGCTATTTGACAGAGAACATACGCGATTTCTACAGAACCATAGGGTCATCTACTTTCACCCAATCTTTTACTTCTAGAACTTTAGAGTTTTACAGTTATCTATCCGTTTTCAAATTTCATCAATAGGAAAGCTAATGCTTTTTTGTAAACATCTCTCCTGTCCACCCAATCAATCTTATTTTCTTCAAATTATCTGAAATCGAAACTGACAATTGGAATAATCCTTCCTTCTTAACAATAGTATCAGTGCAAAAGGGGAAAATTTTCTCAATTCTACCAGACAGGACTGCCAACCACCTCTAGTTTTGCCGGTGATGAGTGAAATGATTGGTGAAAATGAAGATGACAGTGCACTCAGTGAAGCTGGGAAAATGGATAATTTAGCCACTTTGAAGAGTGGACTTTCAGAGGTTTGCATGATAAATACTAATTGTTCATGCCTTGTTTATGCATATTGTTTTACCTTTTTCTATTGGCTACACGTTGAAGGATTGAGATACTAATTTTCTGATAATAGTTAAGTTGCACATAAATTTTATTGAATACTCATGGTTTTAGTTAGTAGAAGTTTTATATGGCAACAGTTGTCATTATTTGTTATATTTGGTTTTATTATACTTTGAGCATTACTCTTTTCAGTTCATCAATGAAAAATCTTGTTTTCTTCTAAAAAAAATTGTTATATTGATTGCTCCAATAAATCTTTCCCGCTGGTGTTATCTCCTGCTGTATACATGTCTTTGAATGATTATATTGTGTGTCGTGAGGCCTTTTTATTAACTTAGTAAATCCTTCTTGTCTTTGTATTCTTTTCATTTGTTTTTATATTGCACTTTTTGGCTTACACTTCTAGTTTACCACTGCCTATTTGTACGATGTTTGATCATATAATTAAATGGAAGACATTGGGTAAACCATTGCATTTCCTTCCTTGTTTTTACCTATCTCAGTCTATTATTTTGATCATTTCATTTGTATTTACTTGATTATTTCTACCCAGGCTGAGGAAAAACTCTTTCAATTACTTTTAGAAGAGAGAATGAAGATTGCTAGAAGTGTTCGAACTGTCCCGTAAGTTCTGCAAATACTTTTAAGCTACTCATTATGAAATTTGGCATTTTACTTCGACTATCATGCATTCGTTTATATGTATGTGGTTTATATGGAAAACTGTTGGTGATATATAATTAAATTTGCCTCCAACTACAAGCTTAAGCTTTTGGGTGAATTGGTAGTTTAATATGGTATCAGAGTAGGTGATCTAGGGAGGTCCTGTGTTCATGCCTCTGCATTGTCGTTTCCTCCCAATTAAAATCGATTTCCACTTGTTGGGCCTTTCAAATATTTCAAGTCCACAAGTGAGGTAAAATTGATTCCACTTGTTGGACCCTTCAAATATTTCAAGCCCACAAGTGAGGGGGAGTGTTGGTGATATATAATTAAACTTGCCTCCAACCACAAGCTTAAGCTTTTGGGTGAATTGGTAGTTTAATAAAAACTTTTCTTGTCTATTATCTTGCATTTCTTCTTATATGCAGGTATGCCATATGTGGTGATCAAACAGTTAAAAGAATTGCATTGATTAGACCATCTACCAAGGCAAGATTAGCAAATATTGATGGTGTCAACCGGGTATATCCTTCAAGACTATGATTACACATTCTTAACTTTCTATGGGGCTAAAACGAAGTCGTTAACATTGTATTTATGTATGCTTGTTCGACATGGATTTCTTACTCGAATGTCACCTCCTCATACATGTGCTAGTTTGCTATAAATTGCTCTTGAATTTCAATGCATTTTTATCAATATTCTGTATGATCCATTCCGTACATCTGCACTCAGAGTTTGACTCCATGATCTTGCACCTTCAGGCTTTAGTTATTGGATTCTAACTAGCCAAAGTTGTGAGATTGTTATTTGCTCTGTCATGAAATGATTGTCAAACAATTCAATAATGGTACAGCATCTGCTAACAATGCACGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCACAACAAGTTAGTCAATCACTGGATGGAGAATATAGAAAGCCAAATCGACGACGACGACCATTGTCTCCAGCAAGGTTCAAAACTTGGAAAATGTGGCATGAAGATGGTCTCTCAATACAGAAAATTGCTGTAAGTATTTTTTTTTTTACTTTTTGAAGTTATTGAGGGAAAAAGGCTTATGAAGATGAACGTAACAGCATGGCAATTAGAAACTCATTCACACGTTGAAGTTCACCCATGTATATAAATAAGTCTGGAAAAAAACTTTGAATCAGTTTAGACTGTGCAAATATAGAATACAACTCTGGAATGCTCAGAATTTAATTACTTTTCACCTGAAAGAAGTTTACTTCCTGAAAAAGAACAAACTTCTTGA

mRNA sequence

GTTCATTTTTATGAATGGTACTGTTTAACGTATGGTGTACAAAATTGTATTCTTGTGCAGGCTATTTGACAGAGAACATACGCGATTTCTACAGAACCATAGGTATCAGTGCAAAAGGGGAAAATTTTCTCAATTCTACCAGACAGGACTGCCAACCACCTCTAGTTTTGCCGGTGATGAGTGAAATGATTGGTGAAAATGAAGATGACAGTGCACTCAGTGAAGCTGGGAAAATGGATAATTTAGCCACTTTGAAGAGTGGACTTTCAGAGGCTGAGGAAAAACTCTTTCAATTACTTTTAGAAGAGAGAATGAAGATTGCTAGAAGTGTTCGAACTGTCCCGTATGCCATATGTGGTGATCAAACAGTTAAAAGAATTGCATTGATTAGACCATCTACCAAGGCAAGATTAGCAAATATTGATGGTGTCAACCGGCATCTGCTAACAATGCACGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCACAACAAGTTAGTCAATCACTGGATGGAGAATATAGAAAGCCAAATCGACGACGACGACCATTGTCTCCAGCAAGGTTCAAAACTTGGAAAATGTGGCATGAAGATGGTCTCTCAATACAGAAAATTGCTAATACAACTCTGGAATGCTCAGAATTTAATTACTTTTCACCTGAAAGAAGTTTACTTCCTGAAAAAGAACAAACTTCTTGA

Coding sequence (CDS)

ATGGTACTGTTTAACGTATGGTGTACAAAATTGTATTCTTGTGCAGGCTATTTGACAGAGAACATACGCGATTTCTACAGAACCATAGGTATCAGTGCAAAAGGGGAAAATTTTCTCAATTCTACCAGACAGGACTGCCAACCACCTCTAGTTTTGCCGGTGATGAGTGAAATGATTGGTGAAAATGAAGATGACAGTGCACTCAGTGAAGCTGGGAAAATGGATAATTTAGCCACTTTGAAGAGTGGACTTTCAGAGGCTGAGGAAAAACTCTTTCAATTACTTTTAGAAGAGAGAATGAAGATTGCTAGAAGTGTTCGAACTGTCCCGTATGCCATATGTGGTGATCAAACAGTTAAAAGAATTGCATTGATTAGACCATCTACCAAGGCAAGATTAGCAAATATTGATGGTGTCAACCGGCATCTGCTAACAATGCACGGAGATCTAATTCTTGAAGCAGTCAAGCGTCTATCACAACAAGTTAGTCAATCACTGGATGGAGAATATAGAAAGCCAAATCGACGACGACGACCATTGTCTCCAGCAAGGTTCAAAACTTGGAAAATGTGGCATGAAGATGGTCTCTCAATACAGAAAATTGCTAATACAACTCTGGAATGCTCAGAATTTAATTACTTTTCACCTGAAAGAAGTTTACTTCCTGAAAAAGAACAAACTTCTTGA

Protein sequence

MVLFNVWCTKLYSCAGYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMDNLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLANIDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDGLSIQKIANTTLECSEFNYFSPERSLLPEKEQTS*

Homology

[Close]

BLAST of CSPI04G11060 vs. ExPASy TrEMBL
Match: A0A5A7TE95 (DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00270 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.4e-85
Identity = 163/188 (86.70%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENIRDFYRTIGISAKGE FLNS RQDCQPPLVLP+ SEM GENED SALSE+GKMD
Sbjct: 70  GYLTENIRDFYRTIGISAKGEKFLNSARQDCQPPLVLPMTSEMTGENEDASALSESGKMD 129

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS RT PYAICGDQTV+RIAL RPSTKARLAN
Sbjct: 130 NLATLKSGLSEAEEKLFQLLLEERMKLARSARTAPYAICGDQTVQRIALTRPSTKARLAN 189

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 195
           IDGVN+HLL MHGDLILEAVKRLSQQVS SLDGEYR+PN +RRPL+P +F+ WKMWHE G
Sbjct: 190 IDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREPN-KRRPLAPEKFEAWKMWHEHG 249

Query: 196 LSIQKIAN 204
           LS+QKIAN
Sbjct: 250 LSVQKIAN 256

[Close]

BLAST of CSPI04G11060 vs. ExPASy TrEMBL
Match: A0A1S3B4Q5 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103485999 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.4e-85
Identity = 163/188 (86.70%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENIRDFYRTIGISAKGE FLNS RQDCQPPLVLP+ SEM GENED SALSE+GKMD
Sbjct: 474 GYLTENIRDFYRTIGISAKGEKFLNSARQDCQPPLVLPMTSEMTGENEDASALSESGKMD 533

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS RT PYAICGDQTV+RIAL RPSTKARLAN
Sbjct: 534 NLATLKSGLSEAEEKLFQLLLEERMKLARSARTAPYAICGDQTVQRIALTRPSTKARLAN 593

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 195
           IDGVN+HLL MHGDLILEAVKRLSQQVS SLDGEYR+PN +RRPL+P +F+ WKMWHE G
Sbjct: 594 IDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREPN-KRRPLAPEKFEAWKMWHEHG 653

Query: 196 LSIQKIAN 204
           LS+QKIAN
Sbjct: 654 LSVQKIAN 660

[Close]

BLAST of CSPI04G11060 vs. ExPASy TrEMBL
Match: A0A5A7TI77 (ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001150 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.2e-82
Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTE IRD YRTIGISAKGE FLNS RQDCQPPLVLPV S++IGENEDDSAL+EAGKMD
Sbjct: 349 GYLTETIRDVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMD 408

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS  T PYA+CGDQTVKRIAL RPSTKARLAN
Sbjct: 409 NLATLKSGLSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLAN 468

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYR---------------KPNRRRRPL 195
           IDGVN+HLL MHGDLILEAVK LSQQVS SLDGEYR               +PN +RRPL
Sbjct: 469 IDGVNQHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPN-QRRPL 528

Query: 196 SPARFKTWKMWHEDGLSIQKIAN 204
           +PA+F+ WKMWHEDGLSIQKIAN
Sbjct: 529 APAKFEAWKMWHEDGLSIQKIAN 550

[Close]

BLAST of CSPI04G11060 vs. ExPASy TrEMBL
Match: A0A1S3B4Q2 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.2e-82
Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTE IRD YRTIGISAKGE FLNS RQDCQPPLVLPV S++IGENEDDSAL+EAGKMD
Sbjct: 473 GYLTETIRDVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMD 532

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS  T PYA+CGDQTVKRIAL RPSTKARLAN
Sbjct: 533 NLATLKSGLSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLAN 592

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYR---------------KPNRRRRPL 195
           IDGVN+HLL MHGDLILEAVK LSQQVS SLDGEYR               +PN +RRPL
Sbjct: 593 IDGVNQHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPN-QRRPL 652

Query: 196 SPARFKTWKMWHEDGLSIQKIAN 204
           +PA+F+ WKMWHEDGLSIQKIAN
Sbjct: 653 APAKFEAWKMWHEDGLSIQKIAN 674

[Close]

BLAST of CSPI04G11060 vs. ExPASy TrEMBL
Match: A0A1S3B4R4 (ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.2e-82
Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTE IRD YRTIGISAKGE FLNS RQDCQPPLVLPV S++IGENEDDSAL+EAGKMD
Sbjct: 349 GYLTETIRDVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMD 408

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS  T PYA+CGDQTVKRIAL RPSTKARLAN
Sbjct: 409 NLATLKSGLSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLAN 468

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYR---------------KPNRRRRPL 195
           IDGVN+HLL MHGDLILEAVK LSQQVS SLDGEYR               +PN +RRPL
Sbjct: 469 IDGVNQHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPN-QRRPL 528

Query: 196 SPARFKTWKMWHEDGLSIQKIAN 204
           +PA+F+ WKMWHEDGLSIQKIAN
Sbjct: 529 APAKFEAWKMWHEDGLSIQKIAN 550

[Close]

BLAST of CSPI04G11060 vs. NCBI nr
Match: XP_011653461.2 (uncharacterized protein LOC101222268 [Cucumis sativus] >KAE8649368.1 hypothetical protein Csa_019123 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.9e-98
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENI DFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD
Sbjct: 473 GYLTENICDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 532

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQT+KRIALIRPSTKARLAN
Sbjct: 533 NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTIKRIALIRPSTKARLAN 592

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 195
           IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG
Sbjct: 593 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 652

Query: 196 LSIQKIAN 204
           LSIQKIAN
Sbjct: 653 LSIQKIAN 660

[Close]

BLAST of CSPI04G11060 vs. NCBI nr
Match: KAA0041754.1 (ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa] >TYK27044.1 ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.1 bits (832), Expect = 4.9e-85
Identity = 163/188 (86.70%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENIRDFYRTIGISAKGE FLNS RQDCQPPLVLP+ SEM GENED SALSE+GKMD
Sbjct: 70  GYLTENIRDFYRTIGISAKGEKFLNSARQDCQPPLVLPMTSEMTGENEDASALSESGKMD 129

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS RT PYAICGDQTV+RIAL RPSTKARLAN
Sbjct: 130 NLATLKSGLSEAEEKLFQLLLEERMKLARSARTAPYAICGDQTVQRIALTRPSTKARLAN 189

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 195
           IDGVN+HLL MHGDLILEAVKRLSQQVS SLDGEYR+PN +RRPL+P +F+ WKMWHE G
Sbjct: 190 IDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREPN-KRRPLAPEKFEAWKMWHEHG 249

Query: 196 LSIQKIAN 204
           LS+QKIAN
Sbjct: 250 LSVQKIAN 256

[Close]

BLAST of CSPI04G11060 vs. NCBI nr
Match: XP_008442004.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis melo])

HSP 1 Score: 325.1 bits (832), Expect = 4.9e-85
Identity = 163/188 (86.70%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENIRDFYRTIGISAKGE FLNS RQDCQPPLVLP+ SEM GENED SALSE+GKMD
Sbjct: 474 GYLTENIRDFYRTIGISAKGEKFLNSARQDCQPPLVLPMTSEMTGENEDASALSESGKMD 533

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS RT PYAICGDQTV+RIAL RPSTKARLAN
Sbjct: 534 NLATLKSGLSEAEEKLFQLLLEERMKLARSARTAPYAICGDQTVQRIALTRPSTKARLAN 593

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDG 195
           IDGVN+HLL MHGDLILEAVKRLSQQVS SLDGEYR+PN +RRPL+P +F+ WKMWHE G
Sbjct: 594 IDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREPN-KRRPLAPEKFEAWKMWHEHG 653

Query: 196 LSIQKIAN 204
           LS+QKIAN
Sbjct: 654 LSVQKIAN 660

[Close]

BLAST of CSPI04G11060 vs. NCBI nr
Match: XP_011653463.2 (uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical protein Csa_019113 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 1.0e-82
Identity = 166/203 (81.77%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTENIRD YRTIGISAKGE FL+S RQDCQPPLVLPV SEMIGENEDDSAL EAGKMD
Sbjct: 473 GYLTENIRDVYRTIGISAKGEQFLDSARQDCQPPLVLPVTSEMIGENEDDSALIEAGKMD 532

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLAT KSGLSEAEEKLFQLLLEERMK+ARS  T PYAICGDQTVKRIAL RPSTKARLAN
Sbjct: 533 NLATFKSGLSEAEEKLFQLLLEERMKLARSAGTAPYAICGDQTVKRIALTRPSTKARLAN 592

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYR---------------KPNRRRRPL 195
           IDGVN+HLL MHGDLILEAVKRLSQQVS SLDGEYR               +PN +RRPL
Sbjct: 593 IDGVNQHLLKMHGDLILEAVKRLSQQVSLSLDGEYREEGNGQGTTMRKLYTEPN-QRRPL 652

Query: 196 SPARFKTWKMWHEDGLSIQKIAN 204
           +PA+F+ WKMWHEDGLSIQKIAN
Sbjct: 653 APAKFEAWKMWHEDGLSIQKIAN 674

[Close]

BLAST of CSPI04G11060 vs. NCBI nr
Match: XP_008442016.1 (PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo])

HSP 1 Score: 314.3 bits (804), Expect = 8.6e-82
Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 0


Query: 16  GYLTENIRDFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMD 75
           GYLTE IRD YRTIGISAKGE FLNS RQDCQPPLVLPV S++IGENEDDSAL+EAGKMD
Sbjct: 349 GYLTETIRDVYRTIGISAKGEQFLNSARQDCQPPLVLPVTSDLIGENEDDSALTEAGKMD 408

Query: 76  NLATLKSGLSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTVKRIALIRPSTKARLAN 135
           NLATLKSGLSEAEEKLFQLLLEERMK+ARS  T PYA+CGDQTVKRIAL RPSTKARLAN
Sbjct: 409 NLATLKSGLSEAEEKLFQLLLEERMKLARSAGTAPYAVCGDQTVKRIALTRPSTKARLAN 468

Query: 136 IDGVNRHLLTMHGDLILEAVKRLSQQVSQSLDGEYR---------------KPNRRRRPL 195
           IDGVN+HLL MHGDLILEAVK LSQQVS SLDGEYR               +PN +RRPL
Sbjct: 469 IDGVNQHLLKMHGDLILEAVKLLSQQVSLSLDGEYREEGNGQGTTTRKLYTEPN-QRRPL 528

Query: 196 SPARFKTWKMWHEDGLSIQKIAN 204
           +PA+F+ WKMWHEDGLSIQKIAN
Sbjct: 529 APAKFEAWKMWHEDGLSIQKIAN 550

The following BLAST results are available for this feature:

BLAST of CSPI04G11060 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G11060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE95	2.4e-85	86.70	DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00270 PE...	[more]
A0A1S3B4Q5	2.4e-85	86.70	ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103485999 PE=3 SV=1	[more]
A0A5A7TI77	4.2e-82	80.30	ATP-dependent DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3B4Q2	4.2e-82	80.30	ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1	[more]
A0A1S3B4R4	4.2e-82	80.30	ATP-dependent DNA helicase OS=Cucumis melo OX=3656 GN=LOC103486004 PE=3 SV=1	[more]

BLAST of CSPI04G11060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653461.2	2.9e-98	98.94	uncharacterized protein LOC101222268 [Cucumis sativus] >KAE8649368.1 hypothetica...	[more]
KAA0041754.1	4.9e-85	86.70	ATP-dependent DNA helicase RecQ-like [Cucumis melo var. makuwa] >TYK27044.1 ATP-...	[more]
XP_008442004.1	4.9e-85	86.70	PREDICTED: ATP-dependent DNA helicase RecQ-like [Cucumis melo]	[more]
XP_011653463.2	1.0e-82	81.77	uncharacterized protein LOC101222028 [Cucumis sativus] >KGN53928.2 hypothetical ...	[more]
XP_008442016.1	8.6e-82	80.30	PREDICTED: ATP-dependent DNA helicase RecQ-like isoform X2 [Cucumis melo]	[more]

BLAST of CSPI04G11060 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018982	RQC domain	SMART	SM00956	RQC_2	coord: 1..82 e-value: 2.0E-5 score: 34.0
IPR018982	RQC domain	PFAM	PF09382	RQC	coord: 2..74 e-value: 2.6E-17 score: 62.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..97 e-value: 2.1E-24 score: 87.5
IPR002121	HRDC domain	PFAM	PF00570	HRDC	coord: 120..186 e-value: 6.0E-12 score: 45.4
IPR002121	HRDC domain	PROSITE	PS50967	HRDC	coord: 116..196 score: 17.414795
IPR044876	HRDC domain superfamily	GENE3D	1.10.150.80	HRDC domain	coord: 115..198 e-value: 2.5E-14 score: 54.9
None	No IPR available	PANTHER	PTHR13710	DNA HELICASE RECQ FAMILY MEMBER	coord: 1..205
None	No IPR available	PANTHER	PTHR13710:SF120	WERNER SYNDROME ATP-DEPENDENT HELICASE	coord: 1..205
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 113..190
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G11060.1	CSPI04G11060.1	mRNA
CSPI04G11060.2	CSPI04G11060.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding