CSPI04G10840 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G10840
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNADH:ubiquinone oxidoreductase, ESSS subunit
LocationChr4: 9135938 .. 9137055 (-)
RNA-Seq ExpressionCSPI04G10840
SyntenyCSPI04G10840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACAATCTAACAAAATAACAAAATATAACAACAAATTATATTTACATTAATACATGTTTTTGGCAAAAGCCCACAAATTGAAGCCTCCAACGATCTCTCAACACATAGTTAACGACCACCATGCAACCTGCAATAACAACTATGAAAAAGAAAAAGAAAATGAAGAAGTGAAAGAGGCAGAAAAGATTAGTATTTTAGTAATTCGAACTCAAAAGGATTTAAGGAAAATGAGAAAACTTATTTTGAACCATTTTTGTTGGGGCCTTTTGTACAATTTATCTAAAAAATGTAAATCGAGAATCTCAAAACGACGACGTTTCGCCTTGTCGATAGACCACAAGTTCTCAGTATAACGCGACTGAATAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAATCCAAAACGCCCTCGCCCACGCCGACTAGTGTCTGAAATATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTGATTCCTCCGCTGAAAAGGGGTTTCGGATATATGTTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTTCTACATGTTTTTGCTGGCTCCTTTGGAGATTCAATAACTGGTTTATTTTTAATTGTTAGCTTCGGACATATTTGACGTTGTAAATGTCAAGTGTTTAAGAATTTTAACTTTCTGCTATGTTATTCAGTTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTTTCTGGAAATCTTATGACATTGATTTT

mRNA sequence

TAACAATCTAACAAAATAACAAAATATAACAACAAATTATATTTACATTAATACATGTTTTTGGCAAAAGCCCACAAATTGAAGCCTCCAACGATCTCTCAACACATAGTTAACGACCACCATGCAACCTGCAATAACAACTATGAAAAAGAAAAAGAAAATGAAGAAGTGAAAGAGGCAGAAAAGATTAGTATTTTAGTAATTCGAACTCAAAAGGATTTAAGGAAAATGAGAAAACTTATTTTGAACCATTTTTGTTGGGGCCTTTTGTACAATTTATCTAAAAAATGTAAATCGAGAATCTCAAAACGACGACGTTTCGCCTTGTCGATAGACCACAAGTTCTCAGTATAACGCGACTGAATAATCCCTCTCTTTCTCTCTCGCTGGATCGCCCGCACAGTCGCTGAAATCGAAGGATCAATCCAAAACGCCCTCGCCCACGCCGACTAGTGTCTGAAATATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGAATTTCGTGATCCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTGATTCCTCCGCTGAAAAGGGGTTTCGGATATATGTTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTCAATAAGTTTTTCTACATGTTTTTGCTGGCTCCTTTGGAGATTCAATAACTGGTTTATTTTTAATTGTTAGCTTCGGACATATTTGACGTTGTAAATGTCAAGTGTTTAAGAATTTTAACTTTCTGCTATGTTATTCAGTTTCCAATGTGAATTATATATACGGATTCTCTAGTAATTTAGTTCTTTCTGGAAATCTTATGACATTGATTTT

Coding sequence (CDS)

ATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGA

Protein sequence

MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD*
Homology
BLAST of CSPI04G10840 vs. ExPASy TrEMBL
Match: A0A0A0KYE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.1e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. ExPASy TrEMBL
Match: A0A5D3BP74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00110 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.3e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. ExPASy TrEMBL
Match: A0A5A7VJ63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00220 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. ExPASy TrEMBL
Match: A0A1S3CN13 (uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.1e-54
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. ExPASy TrEMBL
Match: A0A6J1EKL9 (uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC111435525 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

BLAST of CSPI04G10840 vs. NCBI nr
Match: XP_004150765.1 (uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hypothetical protein Csa_019136 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 1.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. NCBI nr
Match: TYK00850.1 (uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 2.8e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. NCBI nr
Match: XP_008465110.1 (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 uncharacterized protein E6C27_scaffold2484G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

BLAST of CSPI04G10840 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 218.4 bits (555), Expect = 3.1e-53
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSGSSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

BLAST of CSPI04G10840 vs. NCBI nr
Match: XP_022928682.1 (uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 uncharacterized protein LOC111803776 [Cucurbita pepo subsp. pepo] >KAG6603240.1 hypothetical protein SDJN03_03849, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033542.1 hypothetical protein SDJN02_03264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.6e-52
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 109
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

BLAST of CSPI04G10840 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 0

Query: 2   LRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTS 61
           LR+R+ S     G  +AG SRW +PGHEERPKGY  NRTP  PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFS---RSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

BLAST of CSPI04G10840 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 14  GGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHEERPKGY  NRTP PPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           AKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYE77.1e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1[more]
A0A5D3BP741.3e-5498.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VJ635.1e-5497.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CN135.1e-5497.22uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=... [more]
A0A6J1EKL91.3e-5295.37uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC1114355... [more]
Match NameE-valueIdentityDescription
XP_004150765.11.5e-55100.00uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hypothetical ... [more]
TYK00850.12.8e-5498.15uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa][more]
XP_008465110.11.1e-5397.22PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 unc... [more]
XP_038881129.13.1e-5395.37uncharacterized protein LOC120072731 [Benincasa hispida][more]
XP_022928682.12.6e-5295.37uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 unchar... [more]
Match NameE-valueIdentityDescription
AT2G42310.12.2e-4175.73unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G57785.12.2e-4181.32unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR40637:SF3BNAA03G19790D PROTEINcoord: 3..100
NoneNo IPR availablePANTHERPTHR40637ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEINcoord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10840.1CSPI04G10840.1mRNA