CSPI04G10830 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G10830
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRT_RNaseH_2 domain-containing protein
LocationChr4: 9113254 .. 9113631 (+)
RNA-Seq ExpressionCSPI04G10830
SyntenyCSPI04G10830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAGTAATATTGCCTTCATAAAAACTTCATGCATTTGTAAATTTTTACGAACATGTTAATTACAAGCGTATTGTTTTTTTTGTATCATTTTACTTTCTTTATTTTTATTGTTTTAATTTAATTTTATTATTTTCTTTGTCGCTTTGTTTATTGCTTTGTTTATCGCTTTCTTTTACCACTTTCTAGAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

mRNA sequence

ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

Coding sequence (CDS)

ATGGTCAATGAGGTTTTCTCACATGGTGCTGTGGAGATCGCATCGCTAGATGAAACCAACGTGTTCAAGATCTACAGACAAAGACTCAAGGCATACTATGACGATGAAAATCACATCAAAGTCTTCGTGGATTTAAAAGTAGCGTATCTTGTGCCTACTAAGGAAAAACCAAGAGAAGCAATGTGTAAGGTTTAG

Protein sequence

MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREAMCKV*
Homology
[Close]
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match: A0A0A0KZS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G172550 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60
          MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA
Sbjct: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60

Query: 61 MCKV 65
          MCKV
Sbjct: 61 MCKV 64

[Close]
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match: A0A5D3BEY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00180 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-09
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
          +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Sbjct: 30 VVREVFPHGAVEIASLDRSNMFKVNGQRLQAYYEDEDHIKVSMDLK 75

[Close]
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match: A0A5A7UDM6 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00230 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.9e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
           +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Sbjct: 227 VVIEVFPHGAVEIASLDRSNMFKVNGQRLQAYYEDEDHIKVSMDLK 272

[Close]
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match: A0A5D3DQC6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G001050 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.3e-08
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL 46
           +VN++F HGA+EIASLDE N FK+ RQRLKAYY+D++ IKV +DL
Sbjct: 159 VVNKIFPHGAMEIASLDEKNEFKVNRQRLKAYYEDKDRIKVSMDL 203

[Close]
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match: A0A5D3DV18 (KRAB-A domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00190 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
           +V E+ +HGA+EIASL+  N+FK+  QRLK YY+DEN IK+ VDLK
Sbjct: 157 VVKEILTHGAMEIASLNGDNMFKVNGQRLKVYYEDENCIKISVDLK 202

[Close]
BLAST of CSPI04G10830 vs. NCBI nr
Match: KGN53867.1 (hypothetical protein Csa_019118 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.2e-27
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60
          MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA
Sbjct: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLKVAYLVPTKEKPREA 60

Query: 61 MCKV 65
          MCKV
Sbjct: 61 MCKV 64

[Close]
BLAST of CSPI04G10830 vs. NCBI nr
Match: TYJ97634.1 (uncharacterized protein E5676_scaffold469G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1  MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
          +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Sbjct: 30 VVREVFPHGAVEIASLDRSNMFKVNGQRLQAYYEDEDHIKVSMDLK 75

[Close]
BLAST of CSPI04G10830 vs. NCBI nr
Match: KAA0053238.1 (uncharacterized protein E6C27_scaffold102G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.0e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
           +V EVF HGAVEIASLD +N+FK+  QRL+AYY+DE+HIKV +DLK
Sbjct: 227 VVIEVFPHGAVEIASLDRSNMFKVNGQRLQAYYEDEDHIKVSMDLK 272

[Close]
BLAST of CSPI04G10830 vs. NCBI nr
Match: TYK25881.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDL 46
           +VN++F HGA+EIASLDE N FK+ RQRLKAYY+D++ IKV +DL
Sbjct: 159 VVNKIFPHGAMEIASLDEKNEFKVNRQRLKAYYEDKDRIKVSMDL 203

[Close]
BLAST of CSPI04G10830 vs. NCBI nr
Match: KAA0054587.1 (KRAB-A domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK27551.1 KRAB-A domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-06
Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   MVNEVFSHGAVEIASLDETNVFKIYRQRLKAYYDDENHIKVFVDLK 47
           +V E+ +HGA+EIASL+  N+FK+  QRLK YY+DEN IK+ VDLK
Sbjct: 157 VVKEILTHGAMEIASLNGDNMFKVNGQRLKVYYEDENCIKISVDLK 202

The following BLAST results are available for this feature:
BLAST of CSPI04G10830 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G10830 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZS11.1e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G172550 PE=4 SV=1[more]
A0A5D3BEY08.7e-0969.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UDM61.9e-0869.57RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DQC67.3e-0866.67Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5D3DV182.4e-0660.87KRAB-A domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of CSPI04G10830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53867.12.2e-27100.00hypothetical protein Csa_019118 [Cucumis sativus][more]
TYJ97634.11.8e-0869.57uncharacterized protein E5676_scaffold469G00180 [Cucumis melo var. makuwa][more]
KAA0053238.14.0e-0869.57uncharacterized protein E6C27_scaffold102G00230 [Cucumis melo var. makuwa][more]
TYK25881.11.5e-0766.67Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0054587.14.9e-0660.87KRAB-A domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK27551.1 K... [more]
BLAST of CSPI04G10830 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10830.1CSPI04G10830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding