CSPI04G10660 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G10660
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S28
LocationChr4: 8891134 .. 8895514 (-)
RNA-Seq ExpressionCSPI04G10660
SyntenyCSPI04G10660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTTATGGGGCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACCCTTCTGGAGTCTGAGAGAGAAGCCAGGAGGTTGCGTTGATGATAGTAATTATCCTTCTCAACATGCACTCTTAAGAATAGAATGATGGCTGTTATCAATTTTCCCTCTTATGAAAAATATGATTTTGGATACTGTTATTTTGTTTCGTAACTTCGATTCTAAGATAGAATGTTTGAACCGGACGGATAGTTTATTTGGATTGTCAAACTATTTTTGTTCTGATAAAGAGTTTCTGTGAAAAAGGTTTTTCTTTTCTTTTAAAATGTTGAATATGTGTGTTTTTGGTTATGTAATTTTATAAATGTGCTTTTCTTTTTGGATTTTAGGTTTATAAGAAATGATTTGTTTGGTCCTTAGTTTTCAAAATGCTCTGATGCTTCAGTTTCTAAAAATAGGTTTAGAAGGTCAGCATAAAACTAGTTTGATATGTAAAGTCTTAAAAAACAACTTAATTATGAAAGTTTAATTAAACAAAAAGTTGTGCATGAGCATTTGTTATTTTGATTTGAAGATTTGATTATCTTTCTTATTTTTAATTTTAATTCAAACTAAAATATTTTTAGGTTATAAAAATGTTATTTTAGAGCTGGTGAAAATGTACGATCAATTTTCTTGAGTTCAAACTTTAATTGAAAAATGGGTTAAATTATAAAAGTTGTTTCTAACTTTGTATTTGGTGTGAAAAATATCCATAAAATTTCAAAAGTTTCATAGATTGTTTTGCAGAGTTTCATATACTGGTAATTGACAAATTCTACAAATTAAATAAACCAAAAACCAAATAGAATTCATCTTAATATTTAAGAAAGCACAAAGTTAGATATGGTATAACATTATTTTTTTATCCTTATTTTTTTATTTAATAAAATGAATAAAAAAATCATACTATATACGAAAATACCCATTGCATATCATGATGCAAAACTGAATTGAATGTATCGTCAGAAATGTATATGTAAAAAAAGAGAAATGCCTTAGTTGAAAAATACAAAAGGAATCGCGCACAAAAATTAATTACAATACATATCATATTAGTTGCATTGATAATAATTAAATGATAAGAATTTAGAAACTTTATATTTTGTCTTAAAATTAAAGAAATTTAGTAGGGAAATATATCTTGAACGTTGACCACATTTGTGAAATATGATTATCAACTAAGTTATAACTCGAAATCTTTTTAGCAGTAGTTGGAGTTAGAGTGAAATCAAGTTGGGTTGGGTTGAGTTGAGAGACATTCTCAACCTAATCCGTATTTTCGGGTTATTTGGATTGGGTTAGTCGTTGGATTGTGTATATAATTTTTGTTTTTTTTTCCATCTAGTTTCTAAGACTATAAAAGTTTGAAATCATTACATTTAAATTTAAAACATATATAATTCAAATTTTATCTTTAATTTGTTTTTTATTAAAATAATATTTATTTATATATTATATTAATTTGAGTTGAGTTGGGTTGAACCAAAATTTTCAACCCTCCAACCCAAGACCCAACCCGAAAAAATCAAATTTTTTTAACCTAATCCAATCCAACCCATATTTTAACTTAACCCAACCAAACTCTTATAATATGGGTTAGGTAGTTCGGGTTATTCAAGTTCGACCCACATTTGTACACCCCTAGTTGGAGCCCCAGGCTTGGCACTCCAATCTTAAAATCCATACAACGGGTTGATTCTTTGTTATAATAAGTGAGAAAGGGTAGAAAAATAATTAAACATACAAAATTGAGTAAAATTTAATATTAAGACGGAAAATTTAGTTAATTGGTTAGTAATTGTGGATGTAACCACAATTTTAAGTATACATAGTTTTGTTTGCTTATATCACTCTCGTAATGAAGGGGTAAAAAGGAAAGAGTTTGTGATAAAGTGTAATCTAATCGAAAAAAATAAAGTTGGAGGGGTCATTTTTGTCCATTTTTCAAATATACCTCGACGAATTTTGGTTGCATTTCTCTATAGACGCATATCTCAGCAACACAAAACTAAAGTTTCGCTCGTTATAGGACTTGACCAACCATCTCACGGCACCAGCTGACGACCAGCAACACCTGTGTGAAATTACCATCCTGCTAGGGATATTCTTTATTTCGAGTGAAGGGCCGGTAAGTGTGTGTATATATATTTTTTACAATTACCCATAGGCATTTTTAGGGTCTTTTTTATTTTTATATATATATAGAAAAATGAAAAGGCAATTTGGACTTTTCACATCCCCTAAAGAAAACTAGTTTTTGGCAATTTCCACTCTTTCTTCATTCCTGAATCAGTCTCATCTCTCTCACCTCATTTAGGGCTCCAGATCTTTCCTTTTTGCCAATTTCTCCATAAACTTCATCGCTTCACCTCTAATTACATCGGTATGTCTCTCTATCTTTGATTTTTGAGCTGTTGGTTGTTTCTATCTTTCGATTCAAATGGAATCTCATGTTTAATAGCTCTTGACGTCTGGTAGAATCGCTGGAATCTCATTCATGGTTTTGTTATTGTGATGCCACTTGTGTGTGTTTAGTCATATAACCTTTTAGATTTTAGGTTTTTTTTTCCCCATTTTTGTCTTAAGTTAGCCGCTCGCACTCACAGCCCTTTCCTCTCATCTCTCGTTTGGTTCTCCCTACATCTATACATTTGACATTTATTTTTATTTTTATTTAAATTTCAGATCTCTACTTTCTCACATTTCAGAAATCGATTTCTTGCGTGTGATTCTGTGAGGTATGTAAAATTGTCAATTCTTTGGTGGCTGTTTTTGTTCTTTATCCTATGTTGGTAGCTGTGTTGATTCTTTTAAAACAAATTTATTAAAATTGTATTGACTCTAGTTTAAATCGAAAGATATAAATTTATTAAATCAATACCCTACTCTGCAAAATCGTTATCCGCCGCTTTTTTCCCTCTAATCTCTGTAGTTTGCATTTTAATCTGTTTTTACCACGAATCTGTGCAGTGCAAGGAGATTAAGAATTGCTATATGTTCTTCTTTTCCCTTTTGTGATCTGTTATCAATATGAGTTCCTGAGTATTTTATTTTTTTATTATTGTTTGGTTATTACATGTAGATGTAATGATTTTCGATTCTTGTTTTCTGGCTTTTGTATTTATGCTTTCTACGGAGAGCTTATTACTGTTATCAATGTTGGAATTTGATTGAGAGTTTTTTAATCAGTAATGTTTTGAATTATAAACTTGAAGCGTATTGCTTCTTGTTGCGGGTTATGAGAAAGATATTTTGAGCTATATAAGGTTTTATCATGCATATGAGCTCGAATATTTGGAAGTTGGTGCTAATTCAGTGTGAAATTATTGATGAAAAGAGGGAATTCGAACTATGGACTCGGAAGTAGTTACTTAGAAAGCTTCGGAAAGGATTGCAAAGCATTATGCGGCTAGGATTTTGCCTGCATCCAACTGATTTAAAATGTCTAGACTGCTTGTAGAATGAAGAAGAAACCTTAAGTCATGATATTGTAAACTATGAACTTGATCAACTTTGGTAAATTATATGAAAAAAAGCAACACACCAAGAAGATATGAGAACTATGAAATGGGGAAAATCCTAAAGCCCTAGAGCTAATAGGATCTTGCATAATGACTTCAAGTTTACCAATTGGTTTTGATGGTGCACACCAAGTAGAAGCCGTAATTTAGCTTCTCGGAATTTCCTTATTAGCATTCAAGACTTCGCCATTAAATCTTTGTTTTTCTTTGAAGGAAAAGCTATTTAGAGCTACTCCATACAGCTATCCCAGCAGCCTAGCAAAGTAGTGAACCAAAGAATTTGATAGCACTTTTCTCAACACTTGGATTTTATAAGAGTAGTGGGAAATCAAGCAACCCTAGAGTTTCCAACTACTTATCCAAAGTGCATGACCGTAAACTGCTGCTTATTTGAACCTTTTGGGAATTTCGTTCTCCAAGATGGCCTATAGGAGTTCTCATGGTTTGTCTGAGATGGCTAGTAAGGATTTGCGAGAAAAGGCAGCTCTTTCCGAACTTTTAGCAATATATATCCAAATTAACCAAATTGTTTAATCCTAAATTTTAGAATGCGGAGGGTATTTTTGAAATTATTTCATCTTCTCCTTCTTCTTTCCAACTCTATTAGGGCTGCAAATCCTGAAACCCTAAACAGGGACGGACTAGTAGGGGCTTTGCCGTCGGTGAGTCTTCGGATCAGGAGACAAATTCAGCTTCTGGATAACGATTTTTGTAGGCTGTAA

mRNA sequence

ATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTTATGGGGCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGACTTGACCAACCATCTCACGGCACCAGCTGACGACCAGCAACACCTGTGTGAAATTACCATCCTGCTAGGGATATTCTTTATTTCGAGTGAAGGGCCGGGCTCCAGATCTTTCCTTTTTGCCAATTTCTCCATAAACTTCATCGCTTCACCTCTAATTACATCGATCTCTACTTTCTCACATTTCAGAAATCGATTTCTTGCGTGTGATTCTGTGAGGGCTGCAAATCCTGAAACCCTAAACAGGGACGGACTAGTAGGGGCTTTGCCGTCGGTGAGTCTTCGGATCAGGAGACAAATTCAGCTTCTGGATAACGATTTTTGTAGGCTGTAA

Coding sequence (CDS)

ATGGAATCCCAGATCAAACACGCTGTGGTGGTAAAAGTTATGGGGCGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCTGACTTGACCAACCATCTCACGGCACCAGCTGACGACCAGCAACACCTGTGTGAAATTACCATCCTGCTAGGGATATTCTTTATTTCGAGTGAAGGGCCGGGCTCCAGATCTTTCCTTTTTGCCAATTTCTCCATAAACTTCATCGCTTCACCTCTAATTACATCGATCTCTACTTTCTCACATTTCAGAAATCGATTTCTTGCGTGTGATTCTGTGAGGGCTGCAAATCCTGAAACCCTAAACAGGGACGGACTAGTAGGGGCTTTGCCGTCGGTGAGTCTTCGGATCAGGAGACAAATTCAGCTTCTGGATAACGATTTTTGTAGGCTGTAA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQHLCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNRFLACDSVRAANPETLNRDGLVGALPSVSLRIRRQIQLLDNDFCRL*
Homology
[Close]
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-15
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGP
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGP 45

[Close]
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGP 44

[Close]
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGP 49

[Close]
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGP
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGP 49

[Close]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match: A0A0A0KW48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166940 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.3e-68
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQH 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLT HLT PADDQQH
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTKHLTTPADDQQH 60

Query: 61  LCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNRFLACDSVRAA 120
           LCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNRFLACDSVRAA
Sbjct: 61  LCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNRFLACDSVRAA 120

Query: 121 NPETLNRDGLVGALPS 137
           NPETLNRDGLVGALPS
Sbjct: 121 NPETLNRDGLVGALPS 136

[Close]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match: A0A2U1N763 (YELLOW STRIPE like 6 OS=Artemisia annua OX=35608 GN=CTI12_AA298740 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN 50
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPD T+
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPDQTH 49

[Close]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 45

[Close]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 45

[Close]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 45

[Close]
BLAST of CSPI04G10660 vs. NCBI nr
Match: KGN53863.2 (hypothetical protein Csa_019174 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.9e-25
Identity = 74/136 (54.41%), Postives = 78/136 (57.35%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTNHLTAPADDQQH 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP     +    + ++ 
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61  LCEITILLGIFFISSEGPGSRSFLFANFSINFIASPLITSISTFSHFRNRFLACDSVRAA 120
                                                          RNRFLACDSVRAA
Sbjct: 61  A---------------------------------------------RRNRFLACDSVRAA 91

Query: 121 NPETLNRDGLVGALPS 137
           NPETLNRDGLVGALPS
Sbjct: 121 NPETLNRDGLVGALPS 91

[Close]
BLAST of CSPI04G10660 vs. NCBI nr
Match: PWA69348.1 (YELLOW STRIPE like 6 [Artemisia annua])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPDLTN 50
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPD T+
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPDQTH 49

[Close]
BLAST of CSPI04G10660 vs. NCBI nr
Match: PSS07843.1 (40S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribosomal protein [Actinidia chinensis var. chinensis] >GFY80717.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa] >GFY93581.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa] >GFY99858.1 nucleic acid-binding, OB-fold-like protein [Actinidia rufa])

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 45

[Close]
BLAST of CSPI04G10660 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 100

[Close]
BLAST of CSPI04G10660 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 4.7e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP
Sbjct: 45 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 89

[Close]
BLAST of CSPI04G10660 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]
BLAST of CSPI04G10660 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGP
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGP 44

[Close]
BLAST of CSPI04G10660 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-14
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP 46
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGP
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGP 44

The following BLAST results are available for this feature:
BLAST of CSPI04G10660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P463026.4e-1588.8940S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1[more]
Q9SR731.2e-1388.8940S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1[more]
P347893.5e-1386.6740S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1[more]
Q6PBK36.9e-0973.1740S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1[more]
Q90YP36.9e-0973.1740S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1[more]
BLAST of CSPI04G10660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW482.3e-6898.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G166940 PE=3 SV=1[more]
A0A2U1N7636.0e-1693.88YELLOW STRIPE like 6 OS=Artemisia annua OX=35608 GN=CTI12_AA298740 PE=3 SV=1[more]
A0A6J1HTG72.3e-15100.0040S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=... [more]
A0A0A0LPR22.3e-15100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1[more]
A0A1S3CD612.3e-15100.0040S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1[more]
BLAST of CSPI04G10660 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53863.23.9e-2554.41hypothetical protein Csa_019174 [Cucumis sativus][more]
PWA69348.11.2e-1593.88YELLOW STRIPE like 6 [Artemisia annua][more]
PSS07843.14.7e-15100.0040S ribosomal protein [Actinidia chinensis var. chinensis] >PSS36278.1 40S ribos... [more]
XP_022134697.14.7e-15100.0040S ribosomal protein S28-1-like [Momordica charantia][more]
XP_022922061.14.7e-15100.0040S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata][more]
BLAST of CSPI04G10660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10090.18.6e-1588.89Nucleic acid-binding, OB-fold-like protein [more]
AT5G03850.18.6e-1588.89Nucleic acid-binding, OB-fold-like protein [more]
AT5G64140.12.5e-1486.67ribosomal protein S28 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..55
e-value: 2.3E-21
score: 77.4
IPR000289Ribosomal protein S28ePFAMPF01200Ribosomal_S28ecoord: 4..45
e-value: 2.7E-17
score: 62.5
IPR000289Ribosomal protein S28ePANTHERPTHR1076940S RIBOSOMAL PROTEIN S28coord: 1..99
IPR000289Ribosomal protein S28eCDDcd04457S1_S28Ecoord: 6..45
e-value: 4.07294E-21
score: 79.2163
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10660.1CSPI04G10660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035672 oligopeptide transmembrane transport
biological_process GO:0006508 proteolysis
biological_process GO:0006412 translation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome