CSPI04G10560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G10560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	tRNA-uridine aminocarboxypropyltransferase
Location	Chr4: 8779979 .. 8781036 (-)
RNA-Seq Expression	CSPI04G10560
Synteny	CSPI04G10560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTTCGATTTTGATTGTATAAGTGGTTCGGTTTCCTCAAATTAGATTGTTTTTCATTTTTCAACAGAACTTAACAGCAAACACCCCTTAGATCCTATCATGCCTTACCCTAAAAGGATCCTAGTGGAAGCAACATTCAAACGACATCGTTTTCTCCAAAGGCATGGAGTCAAGAAACAACCACAACTTAGCCGCCGGATATTCGTCGTCGTCCACGCCACCTCGGCGGTCAATTTGCTCTAATTGCAACCGTCCACAACCAGTCTGCCTCTGCAAATTCCTTCCATCTCCACCAATCGCAACAAAAACAAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACCAAATGCCTCCTCAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCACGCTGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCCATCAACATCTCGGATCTAAACATAACTGAAGATCTGGTCCTAATAGCGTTTGACGGAACGTGGAAACATGCGAAGGAGATGGTGCGATCGAGCGAGGAGTATCTGTCGAGGTTTGCGAGGAGAGTTTGTTTGGACATCGATGAGAGTGTTGAAGGCGGAAGCATATTTGATTCGGAGTTGATTCTGAGGAAGGAACCGCACGGCGGATGTGTTAGTACGATGGAGGCGGTGGCGAGGTGTTTGAGAGTGATGGAGTTGGATGGGGCGGCGGTTGAGGAGAAATTGATTGGGGTTTTGAGGGAAATGGTTAGGTTACAAGCTGGGTTTTTGAAGCCCATGAATCCTAGGCCCAAATTGCTTAAGAGTTTGAAGAAGCAAACGAGTGTGACGGAGGATGAAAATTAAAAAAGTTTTTTGAATTTTTGTTTTCCCTTAGGTTTCAATTACAATTTTGTATTTATTCCTTTTTTTTTTTCCCCCTTCCTATTTACCCCTTAACATATTTTAGTCCGGATTTTACTATTTGGAAATGTTTAATGGATTGAGTTTGCAATGCAAC

mRNA sequence

GCGTTCGATTTTGATTGTATAAGTGGTTCGGTTTCCTCAAATTAGATTGTTTTTCATTTTTCAACAGAACTTAACAGCAAACACCCCTTAGATCCTATCATGCCTTACCCTAAAAGGATCCTAGTGGAAGCAACATTCAAACGACATCGTTTTCTCCAAAGGCATGGAGTCAAGAAACAACCACAACTTAGCCGCCGGATATTCGTCGTCGTCCACGCCACCTCGGCGGTCAATTTGCTCTAATTGCAACCGTCCACAACCAGTCTGCCTCTGCAAATTCCTTCCATCTCCACCAATCGCAACAAAAACAAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACCAAATGCCTCCTCAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCACGCTGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCCATCAACATCTCGGATCTAAACATAACTGAAGATCTGGTCCTAATAGCGTTTGACGGAACGTGGAAACATGCGAAGGAGATGGTGCGATCGAGCGAGGAGTATCTGTCGAGGTTTGCGAGGAGAGTTTGTTTGGACATCGATGAGAGTGTTGAAGGCGGAAGCATATTTGATTCGGAGTTGATTCTGAGGAAGGAACCGCACGGCGGATGTGTTAGTACGATGGAGGCGGTGGCGAGGTGTTTGAGAGTGATGGAGTTGGATGGGGCGGCGGTTGAGGAGAAATTGATTGGGGTTTTGAGGGAAATGGTTAGGTTACAAGCTGGGTTTTTGAAGCCCATGAATCCTAGGCCCAAATTGCTTAAGAGTTTGAAGAAGCAAACGAGTGTGACGGAGGATGAAAATTAAAAAAGTTTTTTGAATTTTTGTTTTCCCTTAGGTTTCAATTACAATTTTGTATTTATTCCTTTTTTTTTTTCCCCCTTCCTATTTACCCCTTAACATATTTTAGTCCGGATTTTACTATTTGGAAATGTTTAATGGATTGAGTTTGCAATGCAAC

Coding sequence (CDS)

ATGGAGTCAAGAAACAACCACAACTTAGCCGCCGGATATTCGTCGTCGTCCACGCCACCTCGGCGGTCAATTTGCTCTAATTGCAACCGTCCACAACCAGTCTGCCTCTGCAAATTCCTTCCATCTCCACCAATCGCAACAAAAACAAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACCAAATGCCTCCTCAACGCAACCACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCACGCTGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCCATCAACATCTCGGATCTAAACATAACTGAAGATCTGGTCCTAATAGCGTTTGACGGAACGTGGAAACATGCGAAGGAGATGGTGCGATCGAGCGAGGAGTATCTGTCGAGGTTTGCGAGGAGAGTTTGTTTGGACATCGATGAGAGTGTTGAAGGCGGAAGCATATTTGATTCGGAGTTGATTCTGAGGAAGGAACCGCACGGCGGATGTGTTAGTACGATGGAGGCGGTGGCGAGGTGTTTGAGAGTGATGGAGTTGGATGGGGCGGCGGTTGAGGAGAAATTGATTGGGGTTTTGAGGGAAATGGTTAGGTTACAAGCTGGGTTTTTGAAGCCCATGAATCCTAGGCCCAAATTGCTTAAGAGTTTGAAGAAGCAAACGAGTGTGACGGAGGATGAAAATTAA

Protein sequence

MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNITEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTSVTEDEN*

Homology

[Close]

BLAST of CSPI04G10560 vs. ExPASy Swiss-Prot
Match: Q4R7M4 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Macaca fascicularis OX=9541 GN=DTWD2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-16
Identity = 64/204 (31.37%), Postives = 99/204 (48.53%), Query Frame = 0


Query: 21  RRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLL--NAT 80
           RR  CS C+RPQ VCLC FLP+ P+   T + I+QHP E    L T P+L  CL      
Sbjct: 65  RRPECSRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLAACLPQDKCK 124

Query: 81  TIVNRRLK----PGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNITEDLVLIAFDGTWK 140
             + RR      P LS +  +S   + L+P    ++    I D  +    ++I  DGTW 
Sbjct: 125 VKIGRRFSEERDPELSTVCRKS-GTLILYPGAEAANLEEFILDSPVYPSTIII-IDGTWS 184

Query: 141 HAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHGGCVSTMEAVARCLR 200
            AK++   +   L R  ++V L    S        S+ ++R +P   C+ST+E  A  L 
Sbjct: 185 QAKDIFYKNS--LFRHPKQVQLKTSIS--------SQYVIRMQPTNRCLSTLECAAVALS 244

Query: 201 VMELDGAAVEEKLIGVLREMVRLQ 219
           ++E +   ++E L+  L+ +   Q
Sbjct: 245 ILEKNN-YIQETLLRPLQALCSFQ 255

[Close]

BLAST of CSPI04G10560 vs. ExPASy Swiss-Prot
Match: Q8NBA8 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-16
Identity = 63/204 (30.88%), Postives = 99/204 (48.53%), Query Frame = 0


Query: 21  RRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLL--NAT 80
           RR  C+ C+RPQ VCLC FLP+ P+   T + I+QHP E    L T P+L  CL      
Sbjct: 65  RRPECTRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLAACLPQDKCK 124

Query: 81  TIVNRRLK----PGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNITEDLVLIAFDGTWK 140
             + RR      P LS +  +S   + L+P    ++    I D  +    ++I  DGTW 
Sbjct: 125 VKIGRRFSEERDPELSTVCRKS-GTLILYPGAEAANLEEFILDSPVYPSTIII-IDGTWS 184

Query: 141 HAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHGGCVSTMEAVARCLR 200
            AK++   +   L R  ++V L    S        S+ ++R +P   C+ST+E  A  L 
Sbjct: 185 QAKDIFYKNS--LFRHPKQVQLKTSIS--------SQYVIRMQPTNRCLSTLECAAVALS 244

Query: 201 VMELDGAAVEEKLIGVLREMVRLQ 219
           ++E +   ++E L+  L+ +   Q
Sbjct: 245 ILEKNN-YIQETLLRPLQALCSFQ 255

[Close]

BLAST of CSPI04G10560 vs. ExPASy Swiss-Prot
Match: Q9D0U1 (tRNA-uridine aminocarboxypropyltransferase 2 OS=Mus musculus OX=10090 GN=Dtwd2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-15
Identity = 56/203 (27.59%), Postives = 93/203 (45.81%), Query Frame = 0


Query: 21  RRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLL--NAT 80
           RR  C  C+RPQ VCLC +LP  P+   T + I+QHP E    L T P+L  CL     T
Sbjct: 65  RRPECGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLLAACLPPDRCT 124

Query: 81  TIVNRRLKPGLSKLLD---QSPHAVFLFPPTPHSSPPINISDLNITEDLVLIAFDGTWKH 140
             + RR        L    +    + L+P    ++    I D  +    +++  DGTW  
Sbjct: 125 VKIGRRFSEERDVELATVCRDSGTLILYPGAEATNLEEFILDSPVYPSTIIL-IDGTWSQ 184

Query: 141 AKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHGGCVSTMEAVARCLRV 200
           AK++          F +     + + V+  +   S+ ++R +P   C+ST+E  A  L +
Sbjct: 185 AKDI----------FYKNSLFRLPKQVQLKTSVCSQYVIRMQPTNRCLSTLECAAVALSI 244

Query: 201 MELDGAAVEEKLIGVLREMVRLQ 219
           +E +   ++E L+  L+ +   Q
Sbjct: 245 LEKNN-CIQETLLRPLQALCSFQ 255

[Close]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL
Match: A0A0A0KW36 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G165850 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 3.5e-135
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MESRNNH+LAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES
Sbjct: 1   MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240

Query: 241 VTEDEN 247
           VTEDEN
Sbjct: 241 VTEDEN 246

[Close]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL
Match: A0A5D3D883 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00010 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.2e-128
Identity = 233/246 (94.72%), Postives = 237/246 (96.34%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MES NNHN AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATKTKIIILQHPHES
Sbjct: 1   MESTNNHNFAAGYSSSSRPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSP AVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEE+LSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLK+ K++TS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKNFKQKTS 240

Query: 241 VTEDEN 247
           V EDEN
Sbjct: 241 VMEDEN 246

[Close]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL
Match: A0A5A7TJW5 (tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00690 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.2e-128
Identity = 233/246 (94.72%), Postives = 237/246 (96.34%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MES NNHN AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATKTKIIILQHPHES
Sbjct: 1   MESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSP AVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEE+LSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLK+ K++TS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKNFKQKTS 240

Query: 241 VTEDEN 247
           V EDEN
Sbjct: 241 VMEDEN 246

[Close]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL
Match: A0A6J1EL33 (tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111435542 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.7e-108
Identity = 203/252 (80.56%), Postives = 224/252 (88.89%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           ME  N+H+ +A   +SS P RRSIC NC RPQPVCLCKFLPSPPIATKT+IIILQHPHE+
Sbjct: 1   MEPTNHHHNSA---ASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEA 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+L++
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISELDL 120

Query: 121 T------EDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELIL 180
           T       +LVLIAFDGTWKHAKEMVRSSEE+LSRFARR+CLD DESV+GGSIFDSELIL
Sbjct: 121 TSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELIL 180

Query: 181 RKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKS 240
           RKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKLLK+
Sbjct: 181 RKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKLLKT 240

Query: 241 LKKQTSVTEDEN 247
            KK  + +E E+
Sbjct: 241 KKKTKNKSERED 249

[Close]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL
Match: A0A6J1HWG2 (tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111467264 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.8e-108
Identity = 205/251 (81.67%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 3   SRNNHNLAAGYS--SSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 62
           + ++HN AAGYS  SSS PPRRSIC NC RPQ VCLCKFLPSPPIATKT+IIILQHPHE+
Sbjct: 4   TNHHHNSAAGYSSASSSPPPRRSICPNCTRPQLVCLCKFLPSPPIATKTQIIILQHPHEA 63

Query: 63  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 122
           QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+L++
Sbjct: 64  QHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISELDL 123

Query: 123 T------EDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELIL 182
           T       +LVLIAFDGTWKHAKEMVRSSEE+LSRFARR+CLD DESV+GG+IFDSELIL
Sbjct: 124 TSSSSSDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGTIFDSELIL 183

Query: 183 RKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKS 242
           RKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKL+K 
Sbjct: 184 RKEPHGGCVSTMEAVARCLRVMEADGAEIELRLIGVLREMVRLQAGFLKPMNPRPKLVK- 243

Query: 243 LKKQTSVTEDE 246
             K  S  EDE
Sbjct: 244 -MKNKSEREDE 252

[Close]

BLAST of CSPI04G10560 vs. NCBI nr
Match: XP_004149400.1 (DTW domain-containing protein 2 [Cucumis sativus] >KGN53840.1 hypothetical protein Csa_019154 [Cucumis sativus])

HSP 1 Score: 490.7 bits (1262), Expect = 7.2e-135
Identity = 245/246 (99.59%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MESRNNH+LAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES
Sbjct: 1   MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240

Query: 241 VTEDEN 247
           VTEDEN
Sbjct: 241 VTEDEN 246

[Close]

BLAST of CSPI04G10560 vs. NCBI nr
Match: TYK19777.1 (DTW domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 233/246 (94.72%), Postives = 237/246 (96.34%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MES NNHN AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATKTKIIILQHPHES
Sbjct: 1   MESTNNHNFAAGYSSSSRPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSP AVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEE+LSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLK+ K++TS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKNFKQKTS 240

Query: 241 VTEDEN 247
           V EDEN
Sbjct: 241 VMEDEN 246

[Close]

BLAST of CSPI04G10560 vs. NCBI nr
Match: KAA0043562.1 (DTW domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 1.9e-127
Identity = 233/246 (94.72%), Postives = 237/246 (96.34%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 60
           MES NNHN AAGYSSSS PPRR IC NCNRPQPVCLCKFLPS PIATKTKIIILQHPHES
Sbjct: 1   MESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKTKIIILQHPHES 60

Query: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 120
           QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSP AVFLFPPTPHSSPPINISDLNI
Sbjct: 61  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPPAVFLFPPTPHSSPPINISDLNI 120

Query: 121 TEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180
           TEDLVLIAFDGTWKHAKEMVRSSEE+LSRFARRVCLDIDESVEGGSIFDSELILRKEPHG
Sbjct: 121 TEDLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDIDESVEGGSIFDSELILRKEPHG 180

Query: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 240
           GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLK+ K++TS
Sbjct: 181 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKNFKQKTS 240

Query: 241 VTEDEN 247
           V EDEN
Sbjct: 241 VMEDEN 246

[Close]

BLAST of CSPI04G10560 vs. NCBI nr
Match: XP_038883027.1 (tRNA-uridine aminocarboxypropyltransferase 2 [Benincasa hispida])

HSP 1 Score: 425.6 bits (1093), Expect = 2.9e-115
Identity = 217/250 (86.80%), Postives = 232/250 (92.80%), Query Frame = 0


Query: 1   MESRNNHNLAAGYSSSST--PPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPH 60
           ME+ NNHN AAG SSSS+  PPRRSIC NC+RPQPVCLCKFLPS PIATKTKII+LQHPH
Sbjct: 1   MEATNNHNPAAGNSSSSSSPPPRRSICPNCSRPQPVCLCKFLPSSPIATKTKIILLQHPH 60

Query: 61  ESQHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDL 120
           E+QHKLSTTPILTKCLLNATTIVNRRLKPGLS+LLD+SP AVFLFPPTPHS+PPINIS+L
Sbjct: 61  EAQHKLSTTPILTKCLLNATTIVNRRLKPGLSELLDRSPPAVFLFPPTPHSTPPINISEL 120

Query: 121 NITEDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELILRKEP 180
           NIT +LVLIAFDGTWKHAKEMVRSSEE+LSRFARRVCLD DESVEGGSIFDSELILRKEP
Sbjct: 121 NITANLVLIAFDGTWKHAKEMVRSSEEFLSRFARRVCLDFDESVEGGSIFDSELILRKEP 180

Query: 181 HGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLL--KSLK 240
           HGGCVSTMEAVARCLRVME DGAA+E+KLI VLREMVRLQAGFLKPMNPRPKLL  K+ K
Sbjct: 181 HGGCVSTMEAVARCLRVMEPDGAAIEKKLIEVLREMVRLQAGFLKPMNPRPKLLKIKNRK 240

Query: 241 KQTSVTEDEN 247
           K+ S  EDEN
Sbjct: 241 KKMSEGEDEN 250

[Close]

BLAST of CSPI04G10560 vs. NCBI nr
Match: XP_023544253.1 (DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 4.7e-110
Identity = 206/252 (81.75%), Postives = 226/252 (89.68%), Query Frame = 0


Query: 3   SRNNHNLAAGYSS--SSTPPRRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHES 62
           + ++HN AAGYSS  SS P RRSIC NC RPQPVCLCKFLPSPPIATKT+IIILQHPHE+
Sbjct: 4   TNHHHNSAAGYSSAASSPPARRSICPNCTRPQPVCLCKFLPSPPIATKTQIIILQHPHEA 63

Query: 63  QHKLSTTPILTKCLLNATTIVNRRLKPGLSKLLDQSPHAVFLFPPTPHSSPPINISDLNI 122
           QHKLSTTPILTKCLLNATTIVNRRLKPGLS LLD+SP AV+LFPPTPHSSPPINIS+L++
Sbjct: 64  QHKLSTTPILTKCLLNATTIVNRRLKPGLSDLLDRSPTAVYLFPPTPHSSPPINISELDL 123

Query: 123 T------EDLVLIAFDGTWKHAKEMVRSSEEYLSRFARRVCLDIDESVEGGSIFDSELIL 182
           T       +LVLIAFDGTWKHAKEMVRSSEE+LSRFARR+CLD DESV+GGSIFDSELIL
Sbjct: 124 TSSSSPDSNLVLIAFDGTWKHAKEMVRSSEEFLSRFARRICLDFDESVDGGSIFDSELIL 183

Query: 183 RKEPHGGCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKS 242
           RKEPHGGCVSTMEAVARCLRVME DGA +E +LIGVLREMVRLQAGFLKPMNPRPKLLK+
Sbjct: 184 RKEPHGGCVSTMEAVARCLRVMEADGAEIEVRLIGVLREMVRLQAGFLKPMNPRPKLLKT 243

Query: 243 LKKQTSVTEDEN 247
            KK  + +E E+
Sbjct: 244 KKKMKNKSERED 255

[Close]

BLAST of CSPI04G10560 vs. TAIR 10
Match: AT2G41750.1 (DTW domain-containing protein )

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-60
Identity = 135/245 (55.10%), Postives = 161/245 (65.71%), Query Frame = 0


Query: 21  RRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLLNATTI 80
           RR IC NC+RP  +CLC  LP+  I T T+IIIL HPHES+HKL+TTP+LTK LLN T I
Sbjct: 10  RRQICDNCDRPNAICLCHVLPADLIPTNTEIIILHHPHESRHKLNTTPLLTKSLLNVTRI 69

Query: 81  VNRRL------KPGLSKLLDQSPHAVFLFPPTPHSSPPINISD------LNITE-----D 140
             RRL        G + L   +P  ++LFP +P SSP + IS+      LN  E      
Sbjct: 70  PARRLLRRHISTAGGTAL--PAPPTIYLFPSSP-SSPAVTISEFKSLNLLNHREISNPPP 129

Query: 141 LVLIAFDGTWKHAKEMVRSSEEYLSRF-ARRVCLD--IDESVEGGSIFDSELILRKEPHG 200
           L LI FD TWKHAKEMV++SE  L    A RVCLD  ID SV GG+I+DSEL+LRKEP G
Sbjct: 130 LRLIVFDATWKHAKEMVKASEVVLREAGAVRVCLDTEIDASVSGGTIYDSELVLRKEPFG 189

Query: 201 GCVSTMEAVARCLRVMELDGAAVEEKLIGVLREMVRLQAGFLKPMNPRPKLLKSLKKQTS 246
           GCV+T EAVARCL  +E DG  +E KLI VL+EMVR Q+ +LKPM PRPKLLK   +   
Sbjct: 190 GCVTTAEAVARCLGAIEPDGEEIERKLISVLKEMVRFQSKYLKPMKPRPKLLKKRFQNQQ 249

[Close]

BLAST of CSPI04G10560 vs. TAIR 10
Match: AT5G54880.1 (DTW domain-containing protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-05
Identity = 27/82 (32.93%), Postives = 40/82 (48.78%), Query Frame = 0


Query: 21  RRSICSNCNRPQPVCLCKFLPSPPIATKTKIIILQHPHESQHKLSTTPILTKCLLNATTI 80
           +R  C +C++P  +CLCK + SP    +  I ILQH  E +H L++T I    L N    
Sbjct: 44  KRPTCPSCDKPSQLCLCKKMRSPCFDNQVSITILQHSLERKHALNSTRIARLGLKNV--- 103

Query: 81  VNRRLKPGLSKLLDQSPHAVFL 103
                  G++ + D    A FL
Sbjct: 104 -------GVTTVFDVHDEAEFL 115

The following BLAST results are available for this feature:

BLAST of CSPI04G10560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4R7M4	2.4e-16	31.37	tRNA-uridine aminocarboxypropyltransferase 2 OS=Macaca fascicularis OX=9541 GN=D...	[more]
Q8NBA8	5.4e-16	30.88	tRNA-uridine aminocarboxypropyltransferase 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE...	[more]
Q9D0U1	7.8e-15	27.59	tRNA-uridine aminocarboxypropyltransferase 2 OS=Mus musculus OX=10090 GN=Dtwd2 P...	[more]

BLAST of CSPI04G10560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW36	3.5e-135	99.59	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis sativus OX=3659 GN=Csa_4G1...	[more]
A0A5D3D883	9.2e-128	94.72	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7TJW5	9.2e-128	94.72	tRNA-uridine aminocarboxypropyltransferase OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1EL33	3.7e-108	80.56	tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1HWG2	4.8e-108	81.67	tRNA-uridine aminocarboxypropyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CSPI04G10560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149400.1	7.2e-135	99.59	DTW domain-containing protein 2 [Cucumis sativus] >KGN53840.1 hypothetical prote...	[more]
TYK19777.1	1.9e-127	94.72	DTW domain-containing protein 2 [Cucumis melo var. makuwa]	[more]
KAA0043562.1	1.9e-127	94.72	DTW domain-containing protein 2 [Cucumis melo var. makuwa]	[more]
XP_038883027.1	2.9e-115	86.80	tRNA-uridine aminocarboxypropyltransferase 2 [Benincasa hispida]	[more]
XP_023544253.1	4.7e-110	81.75	DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI04G10560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41750.1	2.1e-60	55.10	DTW domain-containing protein	[more]
AT5G54880.1	5.7e-05	32.93	DTW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005636	DTW	SMART	SM01144	DTW_2a	coord: 21..223 e-value: 9.5E-44 score: 161.3
IPR005636	DTW	PFAM	PF03942	DTW	coord: 23..218 e-value: 1.2E-40 score: 139.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR21392:SF0	DTW DOMAIN-CONTAINING PROTEIN 2	coord: 8..233
IPR039262	DTW domain-containing protein DTWD2/YfiP	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 8..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10560.1	CSPI04G10560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
molecular_function	GO:0016432	tRNA-uridine aminocarboxypropyltransferase activity