CSPI04G10030 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G10030
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 8068154 .. 8068932 (+)
RNA-Seq ExpressionCSPI04G10030
SyntenyCSPI04G10030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCCCCAAAACACCAATTATTTAGACAGTGATGGCCACGTGAATGATCACTATAATTTCACCTCAATTTTCTCTCTTTTTTTATCATTATCTATTCCCCAATTCTATAAACTTAAAACCTTACATCCACAAATTCTTCACCCTTTTTCATTTCTTCCAATTTCATTCACGTAAGCTGCAATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGTCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGGTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAAGAATACAGAAGTATATATAAGGTATATGTACGGTGTAGCTTGTTTTTTTTTTATTTATTTTAAATCACTATTAACCCTTCTTCTTTACTTGATCTTCATAATGCAATTTTATTATATTATACGTATTTTGGTACTTACTTAAATACCTGTTTTGTTTGTTTGGGTTAAAAATTGATAACCCATATACATTGGGGAGGAGGACCAATCAATTATATAAGCTTCTCTCCTTCTAATTTTTTTTTATTTATATCTTTTTT

mRNA sequence

AACCCCCAAAACACCAATTATTTAGACAGTGATGGCCACGTGAATGATCACTATAATTTCACCTCAATTTTCTCTCTTTTTTTATCATTATCTATTCCCCAATTCTATAAACTTAAAACCTTACATCCACAAATTCTTCACCCTTTTTCATTTCTTCCAATTTCATTCACGTAAGCTGCAATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGTCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGGTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAAGAATACAGAAGTATATATAAGGTATATGTACGGTGTAGCTTGTTTTTTTTTTATTTATTTTAAATCACTATTAACCCTTCTTCTTTACTTGATCTTCATAATGCAATTTTATTATATTATACGTATTTTGGTACTTACTTAAATACCTGTTTTGTTTGTTTGGGTTAAAAATTGATAACCCATATACATTGGGGAGGAGGACCAATCAATTATATAAGCTTCTCTCCTTCTAATTTTTTTTTATTTATATCTTTTTT

Coding sequence (CDS)

ATGGCGACCGCGGCAGCACCCTCCACCACCGCCATGACAATCCTCATTTTGACGCTAACCATAAGTAGTTATTGCAACGCCGCTTCTGTACTTCCTTCAAATTTCGCTAACGAGACGATCACGGCTATGACATCCACCATCTTTTGTAATGGACTCCTCCAACAGTGCTTCAATGTTGAAGAAAATGTCATCCATTATTATTCTACTCCAAGAACTGGAAGTCGAGCTTCAAGCGTATGTGGTCGGTTCTATAATGGAAGGTATATTAAATGTATAACAACCCAAGGATCCCCCAAACCGAAGGATTGTAGAAGTGCTTACGATCGCACCTGTTCTAGTTAA

Protein sequence

MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEENVIHYYSTPRTGSRASSVCGRFYNGRYIKCITTQGSPKPKDCRSAYDRTCSS*
Homology
[Close]
BLAST of CSPI04G10030 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.4e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60
           MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE
Sbjct: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60

Query: 61  ENVIHYYSTPRTGSRASSVCGRFYNGRYIKCITTQGSPKPKDCRSAYDRTCSS 114
           EN IHYYSTPRTGSRASSVCGRFYNG YIKCITTQGSPKPKDCRSAYDRTCSS
Sbjct: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 113

[Close]
BLAST of CSPI04G10030 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 1   MATAAAPSTTAMTILILTLTI-SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCF-- 60
           MAT    +  A+ I+++  TI +S+C AAS L SN  NET TA TS+ +CN L ++C   
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIG 70

Query: 61  ----NVEENVI-HYYSTPRTGSRASSVCGRFYNGRY--IKCITTQGSPKPKDCRSAYDRT 112
               N+E +     Y+T RT +   +VCGR   GRY   +C+  Q  P P    S + R+
Sbjct: 71  VEDDNIETSAFPSLYNTVRTANGQKAVCGRV--GRYDNQRCL-PQKRPNPIQKCSTFTRS 127

[Close]
BLAST of CSPI04G10030 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 2.9e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60
           MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE
Sbjct: 1   MATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVE 60

Query: 61  ENVIHYYSTPRTGSRASSVCGRFYNGRYIKCITTQGSPKPKDCRSAYDRTCSS 114
           EN IHYYSTPRTGSRASSVCGRFYNG YIKCITTQGSPKPKDCRSAYDRTCSS
Sbjct: 61  ENGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTCSS 113

[Close]
BLAST of CSPI04G10030 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-05
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 0 

Query: 1   MATAAAPSTTAMTILILTLTI-SSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCF-- 60
           MAT    +  A+ I+++  TI +S+C AAS L SN  NET TA TS+ +CN L ++C   
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAAS-LNSNLGNETTTAATSSTWCNSLDKECLIG 70

Query: 61  ----NVEENVI-HYYSTPRTGSRASSVCGRFYNGRY--IKCITTQGSPKPKDCRSAYDRT 112
               N+E +     Y+T RT +   +VCGR   GRY   +C+  Q  P P    S + R+
Sbjct: 71  VEDDNIETSAFPSLYNTVRTANGQKAVCGRV--GRYDNQRCL-PQKRPNPIQKCSTFTRS 127

The following BLAST results are available for this feature:
BLAST of CSPI04G10030 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G10030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY591.4e-5498.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
A0A0A0LA123.5e-0538.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
BLAST of CSPI04G10030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53789.12.9e-5498.23hypothetical protein Csa_015152 [Cucumis sativus][more]
KGN57814.17.2e-0538.02hypothetical protein Csa_009509 [Cucumis sativus][more]
BLAST of CSPI04G10030 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G10030.1CSPI04G10030.1mRNA