CSPI04G09900 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G09900
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
LocationChr4: 7863694 .. 7866570 (+)
RNA-Seq ExpressionCSPI04G09900
SyntenyCSPI04G09900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTCACATCACCCACGGTTGGGTTAGGGTTATTGAATCTAATATACAAGAGTGATAAACTGGAGCCAAACAACCCCTTACAAATTGGGTTTAAATTGGGCCACTCCTACGGCCTCAACTATAATGAAGCTGGGTCCAGTTACTTAGGTCACCCACTTAAACTCGGCCTCAACGACGTAGCTTTACTTTCCCCTCCACACTTACGTTTCTTAGTTTTAATTTTCTAAACCCTAACGCTAAATCTACTTTCTCTCCTAAGTCTCCGCCGTCGCCATCGCCGCCGGTCCACTTCTCTTTCTCTCTCTTTTGTTAAACAACCCCCATCTTCATCTCAATCCTCTATCTTGACTCTTCCACACAGCGGTTTTTTGTTCGAACCACACCGACACCTTCTTCAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTAGCCCCCTTTCTTATATCCTCTTCTATTTTCTTCCCTTTTCTTTCTTTTATCGCTTTTAAGTTGATTTCATTTAGGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGAGTTTTTCCTCCTTCTGATTATAGTTTCTGAGAATCTAAATTTCCTTCAATACATTAAGCAAGTTTCTTGCGTGTTTGTGTATAATTACTTTTCTTGTGTGCCTCATTTCATTTTATTGTCCAACTGTGTTGTTTTCTATTTAATAACAACTATACTATGAAATCTTTTACTCCTGGTTTAAACGATTGGCTTTTTGTGTTTCCTATGGATCTTGTGATCACTGTTCACAATGTTAGTGATGAGAAAAAACTTATAGGTATTGTATTACTGCCCATTTTGATCACTGCTGAAACCTCGTTCTAACAATACAAAAAGCTAACTTATGACTTTCAGAAATTGCATTACGTTTTATATCAGCAGTGAAAATGCAAAACAAAAAGACCAAAATGGTTGCTAAGCCAAAGACTGCGTTATTTGAACATTGTGTGCCATTAAACAACTCTTCTGTCTATTTTAGTTGGTTTAAAGTATCCATCTTAGAGTCAAATTCTCCTGCCACAGTTACCTTTGAATAATTAAATGGTCTACATTTTTGGTGTTTGCTAATTTTTTGGGAAAAGCATAGACAAATTGCTGATCACGTTTCTCTTATTGCCCAACAAATTTTTTGGGTATCATGTTTCTCTTAAATCTTCTACTAGGATTTCTAGAATGAAAGGTCTTTTTCTTAGTTCCTGTGTGAAGATGAGGGCCCATTTGGATTACCTTTTCAACTGTTTGTAAATATTTTTTTTTGCACTCATAAAAACTTATTTAAACACTTAGTAAGTCAGTCTAAACACACCCTTAAACCCCATTTTCAATCTTACATTTACGCATACCAATTAAAGAAAATATCAAGGGTTTTGTTAGGATACCACCTAACAAGAAAATACTCAAGAACACTATAGAATTTTGCGGAAAACATATTGAGAATGTGCTATAATATCATAAGAACAAGTAACAGGCTAACCTCTAGCCTTTTGAGAGGGCTTCTCCATAATTTCCAACTAAAGAAATCTTAAACCCGGAGTCTTTTGGCACTTCGTTTTGAGTTGTCTAAGGTTCTGAACTAATAGTTGGACAAGAAACTATTAATATTTATTATGGGTGATGTATATCTTTTGATAAAAGGCTTCTTGCTTTTCGTTTCTTTGTTTTTTATTTAGATTATTCGAGTCTGAACGAATAATGACATGTTAATCTGAATAAATGGAGATGAATATTAATCAGTCAGTTATATGTAACCATTTCTATTATCATTTTGGGCTATACTTGTAAATACTATTTTTAGCACTTAGAAAGTCAATCTAAACGTGCCTTTGTCTGTCATGCTCTCACCTTTTCTCTCCTACTTCTCTCCTGAAAACAATATGACAGGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGGTCAAAGAAACAGTTTGCAGAAAAGAATTCATTTCTACATCGCACTGTTTCATGTTTTCTACTGTTGATAGCCTAAATATTAACAATGCTTTTAACTCTCAAAATAGCAAGTCCAATTGCCTAGGCAGTTGTGAACACTTTTTTTGCTGCCCATCCTTCTTATCTCAAGACTGTTTTTCCCTTTCTGTTTTCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGAGATACTGTCCAAGTTTTGTATCCTTTTCATTATTTCATCGTGTATGAATCTTTTCTCTGGCACTCTTACTGAAATGGCCAAGTAATGTAGCGTCAGTTTTGCCATTTCTTTTCTAATCAATATATATAATTTTGCATTATATTTTGTAACAAGCTTGATATCTTAGCTTCATTGATGCCTCGTTGTTGGGGTTGTATGGTTAAATTGCTATTCTAGATTATGTGTTCGTTTCTTTTTTCTTCTGGAATCTACCATTTTTTAATAAGTGCTTAGTCAATCCATAACGCTC

mRNA sequence

ATTTTTTCACATCACCCACGGTTGGGTTAGGGTTATTGAATCTAATATACAAGAGTGATAAACTGGAGCCAAACAACCCCTTACAAATTGGGTTTAAATTGGGCCACTCCTACGGCCTCAACTATAATGAAGCTGGGTCCAGTTACTTAGGTCACCCACTTAAACTCGGCCTCAACGACGTAGCTTTACTTTCCCCTCCACACTTACGTTTCTTAGTTTTAATTTTCTAAACCCTAACGCTAAATCTACTTTCTCTCCTAAGTCTCCGCCGTCGCCATCGCCGCCGGTCCACTTCTCTTTCTCTCTCTTTTGTTAAACAACCCCCATCTTCATCTCAATCCTCTATCTTGACTCTTCCACACAGCGGTTTTTTGTTCGAACCACACCGACACCTTCTTCAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGAGATACTGTCCAAGTTTTGTATCCTTTTCATTATTTCATCGTGTATGAATCTTTTCTCTGGCACTCTTACTGAAATGGCCAAGTAATGTAGCGTCAGTTTTGCCATTTCTTTTCTAATCAATATATATAATTTTGCATTATATTTTGTAACAAGCTTGATATCTTAGCTTCATTGATGCCTCGTTGTTGGGGTTGTATGGTTAAATTGCTATTCTAGATTATGTGTTCGTTTCTTTTTTCTTCTGGAATCTACCATTTTTTAATAAGTGCTTAGTCAATCCATAACGCTC

Coding sequence (CDS)

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTTAACTTCTTGGAGTGGAAGAGAGAAGGAGGTCATAGAGAAGCCCAAGTAATGCATCGCTATCACATTACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGTGGTGTTCAGAAGCTGGTCACAATGCTGAAGAAGATGAACGAGAAAGACCCTTTTCGATTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTACAATATGGGCGTGATACCAACCCGGCAGAGCTTGAATTTATGCGATCGCCTGTCAGTTTCATCCTTTTGCAGACGGAGGCTATCGACAGTGTTGGTACGTTTGAAGTTTGCCGAGCATTTGAGGGAAGCTGTTACATACATTGAACAAGGGCATATTAGAGTTGGTCCAGAGACAGTTACTGACCCAGCATTTCTAGTTACAAGGAATATGGAGGACTTCATAACATGGGTTGATTCATCAAAGATAAAGCGAAAGATTTTACAATACAATGATCAGTTGGATGATTACGATGCTATTAACTGTTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTMLKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDAINC*
Homology
[Close]
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-56
Identity = 103/180 (57.22%), Postives = 143/180 (79.44%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY MG++PTR SL LCD +S SSFCRRRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.5e-55
Identity = 102/180 (56.67%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KLY +G++PTR S  LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 102/180 (56.67%), Postives = 142/180 (78.89%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KLY +G++PTR SL LCD ++ SSFCRRRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR +L+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.4e-53
Identity = 97/180 (53.89%), Postives = 139/180 (77.22%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L   L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKFA 120
             +   DPFR +  + LL+KLY MGV+ T+  + +L ++++VS+ CRRRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYD 180
           E +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +Q+DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.2e-48
Identity = 90/183 (49.18%), Postives = 136/183 (74.32%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSL-NLCDRLSVSSFCRRRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL++MG++P++  + ++ ++ +VS+ CRRRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDY 180
           ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW D+SKIKR I +YND+LDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

Query: 181 DAI 182
           D +
Sbjct: 181 DLL 183

[Close]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.8e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.1e-98
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.7e-98
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 INC 184
           +NC
Sbjct: 181 MNC 183

[Close]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match: A0A6J1J025 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN=LOC111480011 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.0e-95
Identity = 175/183 (95.63%), Postives = 180/183 (98.36%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVCML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 INC 184
           +NC
Sbjct: 181 MNC 183

[Close]
BLAST of CSPI04G09900 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 3.4e-97
Identity = 179/183 (97.81%), Postives = 182/183 (99.45%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYNDQLDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

Query: 181 INC 184
           INC
Sbjct: 181 INC 183

[Close]
BLAST of CSPI04G09900 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.0 bits (920), Expect = 2.4e-95
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

Query: 181 INC 184
           +NC
Sbjct: 181 MNC 183

[Close]
BLAST of CSPI04G09900 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 295.8 bits (756), Expect = 2.4e-80
Identity = 140/181 (77.35%), Postives = 163/181 (90.06%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS LCR VQKL  ++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKLYNMGVIPTR+SL L +RLSVSSFCRRRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180
           H +EAVTYIEQGH+RVGPET+TDPAFLVTRNMEDFITWVDSSKIKRK+L+YND LDDYD 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

Query: 181 I 182
           +
Sbjct: 181 L 181

[Close]
BLAST of CSPI04G09900 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 34/130 (26.15%), Postives = 66/130 (50.77%), Query Frame = 0 

Query: 20  WKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK+P R+   E LL 
Sbjct: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLR 80

Query: 80  KLYNMGVI-PTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++  T+  L+    L+V +F  RRL T++ +   A+ +  A   I Q HIRVG 
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 140 ETVTDPAFLV 149
           + V  P+F+V
Sbjct: 141 QLVNIPSFMV 150

[Close]
BLAST of CSPI04G09900 vs. TAIR 10
Match: AT5G15200.1 (Ribosomal protein S4 )

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 35/144 (24.31%), Postives = 71/144 (49.31%), Query Frame = 0 

Query: 20  WKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTMLKKMNEKDPFRLELTEKLLE 79
           +++E    E +++  Y +  + +  +       ++     L  ++EK P R+   E LL 
Sbjct: 21  YEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLR 80

Query: 80  KLYNMGVIPTRQS-LNLCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGP 139
           ++   G++   Q+ L+    L+V +F  RRL T++ +   A+ +  +   I Q HIRVG 
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 140 ETVTDPAFLVTRNMEDFITWVDSS 163
           + V  P+F+V  + +  I +  +S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164

The following BLAST results are available for this feature:
BLAST of CSPI04G09900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q921Y21.8e-5657.22U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q3T0M31.5e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q9NV312.0e-5556.67U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
P328995.4e-5353.89U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
O138355.2e-4849.18U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of CSPI04G09900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZG38.8e-99100.00S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
A0A5D3BRX01.1e-9899.45U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A5D3DJI45.7e-9898.91U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A6J1GW221.2e-9595.63U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1J0252.0e-9595.63U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of CSPI04G09900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153543.11.8e-98100.00U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
KAA0041194.12.4e-9899.45U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
TYK23826.11.2e-9798.91U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_038880355.13.4e-9797.81U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
XP_022955364.12.4e-9595.63U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
BLAST of CSPI04G09900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.12.4e-8077.35Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
AT5G39850.11.0e-0626.15Ribosomal protein S4 [more]
AT5G15200.11.3e-0624.31Ribosomal protein S4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 1.1E-25
score: 101.4
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 6.6E-8
score: 33.3
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..172
e-value: 7.9E-8
score: 42.0
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 2.2E-11
score: 43.3
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..175
e-value: 1.80734E-8
score: 47.2442
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 107..181
e-value: 5.9E-8
score: 34.9
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..180
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 11.960386
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..173
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09900.1CSPI04G09900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding