CSPI04G09760 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G09760
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	biogenesis of lysosome-related organelles complex 1 subunit 2
Location	Chr4: 7752272 .. 7754965 (-)
RNA-Seq Expression	CSPI04G09760
Synteny	CSPI04G09760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTACTTGACTGTTGCTCTAACTCGTCGTCCAAGGTTCAGCAGCTGTTCTGTATCCCAACGAGCCGACGGCGATTGATCACAATTCAACCAACAAAGACACAAGTTTCACGGCCTGTGAAACCCTATTTGCAAGACTTACGGTTTACATCTTGTTTCATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGAACTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGTGTGTAATCTTCCAAACCCCTAATTCTCTCTGTTTCATCATTTTGTATAGCTGAATATGTCAATTAGGTCTCTCTGTCTGATTTGATTTTGCCCTTTCGTCGATGTTGTTGATTTATTCTCACAGAGAAGTGGCTCCGGCTTTGTAAGGTTTGGGAAATCAATTGTCCATGTTTTAGGGTTTGACCAATGATTTAGTAGTTGAAACCTTGATTGATATAGGATCAATCTTTGATGTTCTTAAGCCCTCCAAGGAGAAATTAAGGAAGAGAGACTATCAAACGTTTACACCGGTAAAAATCATTGAAAACACCAGATCCATAATTTGTTATCAAAAAATGAAAATGTGTCACTGACGATCAGTGACATAGAGACCAAAACGAGACCGATTGATTGCAAGCTAAAGATATTTAGTTTGTTTTTTGTCATCCTTGAATGGGTGCACCACAAAGAGGGAAGATAAGGAGAGAAAATATTTTCAGACCTATAACCAAATTCCATCCTGAAGACGAAGACCAAAATTATTCAGAATTCCATTGGAATTTTTAGTTCCTTGACCACCTCCGAGAAAAAGTTGTATGTAGCTCCCCATCGATAAGCACGACAACCTTGTCCTCTTATTTTGCCTTTTATTTTTAGGGTTATGGGAGAACTGAGACCACCCATGAATTCAGCGACAAATTCGCTATTTCTGTATTGATTTCCTCATCCCCTTATCCTCGGTTTCCTCTGTCACCTTATCAGTTCCCTCACTTAAGTCCTCTACAATGATATTTAATTCTTGTCTTTTGCAGCGGTGACCTGGCCTGAATTTCTCGTCTCACCGGAAAAATAGTCCCTTTTCCTTCTTAATTTTGATTTCGTTGTCGGTCATTCAGCGGTACGATTAAGCCATCAGATTTTTCACACCAGAATCGTGAGGAGAAGTAATTGTTGTGGATGACAAAGAAGAATTACGGCTAGGGTTAATCGTTATGGGTCTTGACGTTGCGACCCGTTTTGTTCCTTTTGACCTGATTTGATTGCTCGATCTGTTCGGCCCACTACTCAGATATTTTATTTGTCAGGCTAGGGTTTCCGCTGGCCCCATGGATCATTAACATTTTAGCTTCTAGATCCACTGTGTTTAATTTACGGATCTCACTTTGAATCTCTTCCTTCAGCTCACACACAAATTTACTTTCTAGGACGACATCACTCATATCCTTAAGGCCGACCGATAATTGCTCAAATCGTCGTTGATATTCCCTCACAATGGTTTCTTGCTGCAATTTCATCAATCTCGCATGCTTATCCCCCTAATCAGTCGACTTGAATCTTGCCAACAAAAGCTGTCGGAATTCCGCCCAACTACTAATCTTCGTTTGATACTCCTTCCACTGGTTGTAATAAGGGAACTTCCCATTAATAAATGGCTTGGAAGTCATGGGTTCAATTCGTGGTGGTCACTTAATTTGGATTATCCTGTATAATTAGTTGAGATGCGCATAAGTTGACTTGGATACTCACGGATATAATACTCACGGATATAAGAAAAATACTAGGTAATTTGGATGAAGTGAACAGTTGATAGTTTTCTTTGTTGTACTGTTGTTTGGATGGTCAATGGATTATTTTCTTGATTTTTTAACCTTACAGGCCTATTTACGGTCTGTTAAAGAGTTTTACGTCAATAACTTCAGTCTATCCTTGTATATAATAAGGTAGCTGCTTGTATTTTGACATTTTTGTGATCTTCAATAAAATCTCCTCACTTTTTTACATCATTGATTGTGTTTGGCGAAACCAATATAAGCCATTGGCCTTCTATCTATCTGGCTTTGAGTAGGCATTTCACTCTTTCACTATTTTCTGTTCTACTTCTTTGTAATTCCAAAGGACCTTTTAATTCTCGTGTAGTAACTAGTGTTATCAAAACCTGAAAATGTATGTTAATATTTCATATCTTATTATGTTAACAATGATAAAACTTGAGGTTTGCTTTACTGATCAATGAATCAAAGAGATTTGGGAATCAGCTTTCAAAGCCATATGTTTGGAATGTTTTTCTGAAAATTGAAGGTGGGTTTGTTTTGTTTTGTTTTCTCATATAGGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAATGAAGAGATGGATTTTTTTCATCTACAAATCTCAGATCGCTTCTTTTATGATATCTTATTCATTGGAAGTTGGCGGCG

mRNA sequence

ATCTACTTGACTGTTGCTCTAACTCGTCGTCCAAGGTTCAGCAGCTGTTCTGTATCCCAACGAGCCGACGGCGATTGATCACAATTCAACCAACAAAGACACAAGTTTCACGGCCTGTGAAACCCTATTTGCAAGACTTACGGTTTACATCTTGTTTCATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGAACTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAATGAAGAGATGGATTTTTTTCATCTACAAATCTCAGATCGCTTCTTTTATGATATCTTATTCATTGGAAGTTGGCGGCG

Coding sequence (CDS)

ATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGAACTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAA

Protein sequence

MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNTP*

Homology

[Close]

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot
Match: F4K657 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-32
Identity = 68/104 (65.38%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 10  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVE 69
           +RD+LAESL   FTSVS M+KS+L G++N L+LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 70  QLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKV 114
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

[Close]

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot
Match: Q54Y67 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-11
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 8   LPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVF 67
           LP  ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF
Sbjct: 72  LPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVF 131

Query: 68  VEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSV 117
           +  LK K   F  Y ++I +++  VT+ E  + +LD++   LE KV ++
Sbjct: 132 MGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180

[Close]

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot
Match: Q6QNY1 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX=9606 GN=BLOC1S2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.5e-06
Identity = 30/109 (27.52%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   ++ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot
Match: Q4R7C8 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis OX=9541 GN=BLOC1S2 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.5e-06
Identity = 30/109 (27.52%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   ++ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot
Match: Q32WR5 (Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus OX=10116 GN=Bloc1s2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 30/109 (27.52%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   ++ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL
Match: A0A0A0KW18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL
Match: A0A1S3C0T0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495715 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL
Match: A0A6J1KEZ0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111492648 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 110/121 (90.91%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL
Match: A0A6J1GBP4 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452507 PE=3 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.3e-50
Identity = 110/121 (90.91%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL
Match: W9R9H2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018142 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.0e-38
Identity = 85/117 (72.65%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MA+K ++ P+RDELAESLN+ FTSV  M+KS+L G++NQLELLE+MNLRV EEYKG+GDV
Sbjct: 1   MAEKTDQQPSRDELAESLNDLFTSVFAMVKSELQGTNNQLELLEKMNLRVGEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVC 118
           ASG+RVFVEQLKSKSG FDEY  +IE I+ QVTEFEAVISMLD++VS LESK+ S C
Sbjct: 61  ASGLRVFVEQLKSKSGSFDEYAQKIETIDQQVTEFEAVISMLDRYVSALESKLQSAC 117

[Close]

BLAST of CSPI04G09760 vs. NCBI nr
Match: XP_004137147.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] >KGN53763.1 hypothetical protein Csa_014951 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 3.0e-57
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of CSPI04G09760 vs. NCBI nr
Match: XP_008455567.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 5.6e-56
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of CSPI04G09760 vs. NCBI nr
Match: XP_038880795.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.8e-55
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEE+ PNRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEEQPPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of CSPI04G09760 vs. NCBI nr
Match: XP_022949044.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata] >XP_022997803.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 2.7e-50
Identity = 110/121 (90.91%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CSPI04G09760 vs. NCBI nr
Match: KAG6607085.1 (Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEE-RLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE +LPN DELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN+RVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNIRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CSPI04G09760 vs. TAIR 10
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. )

HSP 1 Score: 139.4 bits (350), Expect = 1.9e-33
Identity = 68/104 (65.38%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 10  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVE 69
           +RD+LAESL   FTSVS M+KS+L G++N L+LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 70  QLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKV 114
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

The following BLAST results are available for this feature:

BLAST of CSPI04G09760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K657	2.7e-32	65.38	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis tha...	[more]
Q54Y67	4.4e-11	33.94	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium d...	[more]
Q6QNY1	9.5e-06	27.52	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX...	[more]
Q4R7C8	9.5e-06	27.52	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicul...	[more]
Q32WR5	1.6e-05	27.52	Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegic...	[more]

BLAST of CSPI04G09760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW18	1.4e-57	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1	[more]
A0A1S3C0T0	2.7e-56	97.52	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX...	[more]
A0A6J1KEZ0	1.3e-50	90.91	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxim...	[more]
A0A6J1GBP4	1.3e-50	90.91	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita mosch...	[more]
W9R9H2	2.0e-38	72.65	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018142 PE=3 SV=1	[more]

BLAST of CSPI04G09760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137147.1	3.0e-57	99.17	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] ...	[more]
XP_008455567.1	5.6e-56	97.52	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumi...	[more]
XP_038880795.1	4.8e-55	96.69	biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida...	[more]
XP_022949044.1	2.7e-50	90.91	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschat...	[more]
KAG6607085.1	4.6e-50	90.08	Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbit...	[more]

BLAST of CSPI04G09760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49550.1	1.9e-33	65.38	Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction wi...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..98
None	No IPR available	PANTHER	PTHR47882	BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2	coord: 6..120
IPR019269	Biogenesis of lysosome-related organelles complex-1, subunit 2	PFAM	PF10046	BLOC1_2	coord: 20..113 e-value: 4.5E-26 score: 91.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G09760.1	CSPI04G09760.1	mRNA