CSPI04G09600 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G09600
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 7573916 .. 7574182 (+)
RNA-Seq Expression	CSPI04G09600
Synteny	CSPI04G09600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGGCATCAACTGTTCGTTTGCGAGCAAGAAAAAGTTAGGGTTGAATAGTTCGCGTGTGGAAGTGAGGAAAATGGTGACGGGGAATGGAAGAGGTGGGCGACTGTGTGGGAGTGAGAAGGATGAAGAACATGGTGAAGTGGAAGGGAAGGGGTGGGCAACTGTGTGGGATGAAGAAAAGAGAGCAATAAAACATGAAGAAGGGGGAGGGAAAGGGCAGCAACGTGGAGAAAGAAGAAGAAGAAGATTTGGGGAAACATCATGA

mRNA sequence

ATGAGGGGCATCAACTGTTCGTTTGCGAGCAAGAAAAAGTTAGGGTTGAATAGTTCGCGTGTGGAAGTGAGGAAAATGGTGACGGGGAATGGAAGAGGTGGGCGACTGTGTGGGAGTGAGAAGGATGAAGAACATGGTGAAGTGGAAGGGAAGGGGTGGGCAACTGTGTGGGATGAAGAAAAGAGAGCAATAAAACATGAAGAAGGGGGAGGGAAAGGGCAGCAACGTGGAGAAAGAAGAAGAAGAAGATTTGGGGAAACATCATGA

Coding sequence (CDS)

ATGAGGGGCATCAACTGTTCGTTTGCGAGCAAGAAAAAGTTAGGGTTGAATAGTTCGCGTGTGGAAGTGAGGAAAATGGTGACGGGGAATGGAAGAGGTGGGCGACTGTGTGGGAGTGAGAAGGATGAAGAACATGGTGAAGTGGAAGGGAAGGGGTGGGCAACTGTGTGGGATGAAGAAAAGAGAGCAATAAAACATGAAGAAGGGGGAGGGAAAGGGCAGCAACGTGGAGAAAGAAGAAGAAGAAGATTTGGGGAAACATCATGA

Protein sequence

MRGINCSFASKKKLGLNSSRVEVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVWDEEKRAIKHEEGGGKGQQRGERRRRRFGETS*

Homology

[Close]

BLAST of CSPI04G09600 vs. ExPASy TrEMBL
Match: A0A0A0L0S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G119260 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.4e-39
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MRGINCSFASKKKLGLNSSRVEVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVWDEE 60
          MRGI+CSFASKKKLGLNSSR EVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVW+EE
Sbjct: 1  MRGIDCSFASKKKLGLNSSRGEVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVWEEE 60

Query: 61 KRAIKHEEGGGKGQQRGERRRRRFGETS 89
          KRAIKHEEGGGKGQQRGERRRRRFGETS
Sbjct: 61 KRAIKHEEGGGKGQQRGERRRRRFGETS 88

[Close]

BLAST of CSPI04G09600 vs. NCBI nr
Match: KGN53746.1 (hypothetical protein Csa_014958 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.7e-38
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MRGINCSFASKKKLGLNSSRVEVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVWDEE 60
          MRGI+CSFASKKKLGLNSSR EVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVW+EE
Sbjct: 1  MRGIDCSFASKKKLGLNSSRGEVRKMVTGNGRGGRLCGSEKDEEHGEVEGKGWATVWEEE 60

Query: 61 KRAIKHEEGGGKGQQRGERRRRRFGETS 89
          KRAIKHEEGGGKGQQRGERRRRRFGETS
Sbjct: 61 KRAIKHEEGGGKGQQRGERRRRRFGETS 88

The following BLAST results are available for this feature:

BLAST of CSPI04G09600 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G09600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S8	8.4e-39	96.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G119260 PE=4 SV=1	[more]

BLAST of CSPI04G09600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53746.1	1.7e-38	96.59	hypothetical protein Csa_014958 [Cucumis sativus]	[more]

BLAST of CSPI04G09600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G09600.1	CSPI04G09600.1	mRNA