CSPI04G09510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G09510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA replication complex GINS protein PSF2
LocationChr4: 7486996 .. 7487477 (-)
RNA-Seq ExpressionCSPI04G09510
SyntenyCSPI04G09510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGTCAATCAGATCCTCACCTGAACCTATTTTCTGCAGAAGAGGTATCCCCTTCTTGCTCTGTTCAAATGATTAAGTCATCGCTAAATGACATTGATCAGAATTCTTTTGGAAATTCTTGTCCAGGTGGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTATTCCCAATATGAGAATGGATTCTCTGCATTTGATCTGTGTATGTCTTCGGTTCATGTTGGCTTTATTGCAATTATATTTTGTTGTGTGTTTTCGGTCTTTTCTTCTTGCTAAAGTGCTTAGCGTTATTGATTTTCTTGTATTTTCAATAGGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTGGGTAAGTTTTGTTTGTTAAATAGGTTGAAGCTTCTTTTCTGTGTGTCATAA

mRNA sequence

ATGGCTGGTCAATCAGATCCTCACCTGAACCTATTTTCTGCAGAAGAGGTGGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTATTCCCAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTGGGTAAGTTTTGTTTGTTAAATAGGTTGAAGCTTCTTTTCTGTGTGTCATAA

Coding sequence (CDS)

ATGGCTGGTCAATCAGATCCTCACCTGAACCTATTTTCTGCAGAAGAGGTGGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTATTCCCAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTGGGTAAGTTTTGTTTGTTAAATAGGTTGAAGCTTCTTTTCTGTGTGTCATAA

Protein sequence

MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVGKFCLLNRLKLLFCVS*
Homology
BLAST of CSPI04G09510 vs. ExPASy Swiss-Prot
Match: Q9C7A8 (DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GINS2 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-28
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQ+DPH++LFS +EVEF+AEDE+VEI+PNM M+ L+ I GD+G F PQI T+VPLWLA
Sbjct: 1  MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSV 80
          +ALK+RGKC  R P WMSV
Sbjct: 61 VALKRRGKCTFRPPGWMSV 79

BLAST of CSPI04G09510 vs. ExPASy Swiss-Prot
Match: Q9Y248 (DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-17
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 14 AEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
          A EVEF+AE E+V IIPN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC +  
Sbjct: 3  AAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLP 62

Query: 74 PEWMSVGK 82
          PEWM V K
Sbjct: 63 PEWMDVEK 70

BLAST of CSPI04G09510 vs. ExPASy Swiss-Prot
Match: Q7ZT46 (DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-17
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 14 AEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
          A EVEF+AE E V +IPN  +D ++LI GD GPF P +  EVPLWLAI LK+R KC I  
Sbjct: 3  ASEVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVP 62

Query: 74 PEWMSVGK 82
          PEWM V K
Sbjct: 63 PEWMDVEK 70

BLAST of CSPI04G09510 vs. ExPASy Swiss-Prot
Match: Q9D600 (DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-17
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 14 AEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRT 73
          A EVEF+AE E+V IIPN  +D ++LI GD GPF P +  +VPLWLAI LK+R KC +  
Sbjct: 3  AAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLP 62

Query: 74 PEWMSVGK 82
          PEWM V K
Sbjct: 63 PEWMDVEK 70

BLAST of CSPI04G09510 vs. ExPASy Swiss-Prot
Match: Q54BL9 (Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum OX=44689 GN=gins2 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-16
Identity = 33/66 (50.00%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 16 EVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPE 75
          ++EF+AED  + ++PN +M+SL  + G+YGPF P    E+PLWLAI+LKK+ KC I  P+
Sbjct: 10 QIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITPPD 69

Query: 76 WMSVGK 82
          WM+  K
Sbjct: 70 WMTYNK 75

BLAST of CSPI04G09510 vs. ExPASy TrEMBL
Match: A0A0A0KVY8 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 9.7e-49
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1   MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
           MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 71  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 130

Query: 61  IALKKRGKCAIRTPEWMSVGKFCLLNRLKLLFCVS 96
           IALKKRGKCAIRTPEWMSVGKFCLLNRLKLLFCVS
Sbjct: 131 IALKKRGKCAIRTPEWMSVGKFCLLNRLKLLFCVS 165

BLAST of CSPI04G09510 vs. ExPASy TrEMBL
Match: A0A1S4E3Y0 (DNA replication complex GINS protein PSF2 OS=Cucumis melo OX=3656 GN=LOC103501165 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP LNLFSAEEVEFVAEDEM+EI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIRTPEWMSV K
Sbjct: 61 IALKKRGKCAIRTPEWMSVEK 81

BLAST of CSPI04G09510 vs. ExPASy TrEMBL
Match: A0A5D3C8I7 (DNA replication complex GINS protein PSF2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00350 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.9e-38
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP LNLFSAEEVEFVAEDEM+EI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIRTPEWMSV K
Sbjct: 61 IALKKRGKCAIRTPEWMSVEK 81

BLAST of CSPI04G09510 vs. ExPASy TrEMBL
Match: A0A6J1HN13 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.5e-37
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPHL LFSAEE+EFVAEDEMVEI+PNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIR PEWMSV K
Sbjct: 61 IALKKRGKCAIRPPEWMSVEK 81

BLAST of CSPI04G09510 vs. ExPASy TrEMBL
Match: A0A6J1HPD8 (DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC111466105 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.5e-37
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPHL LFSAEE+EFVAEDEMVEI+PNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIR PEWMSV K
Sbjct: 61 IALKKRGKCAIRPPEWMSVEK 81

BLAST of CSPI04G09510 vs. NCBI nr
Match: XP_004137154.1 (DNA replication complex GINS protein PSF2 [Cucumis sativus] >KAE8649312.1 hypothetical protein Csa_014994 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 4.9e-39
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIRTPEWMSV K
Sbjct: 61 IALKKRGKCAIRTPEWMSVEK 81

BLAST of CSPI04G09510 vs. NCBI nr
Match: XP_038905117.1 (DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038905118.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038905119.1 DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 3.2e-38
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPHLNLFSAEEVEFVAEDEMVEI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIR PEWMSV K
Sbjct: 61 IALKKRGKCAIRPPEWMSVEK 81

BLAST of CSPI04G09510 vs. NCBI nr
Match: XP_008462891.1 (PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo] >XP_016902941.1 PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP LNLFSAEEVEFVAEDEM+EI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIRTPEWMSV K
Sbjct: 61 IALKKRGKCAIRTPEWMSVEK 81

BLAST of CSPI04G09510 vs. NCBI nr
Match: TYK07564.1 (DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDP LNLFSAEEVEFVAEDEM+EI+PNMRMDSLHLICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPQLNLFSAEEVEFVAEDEMLEIVPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIRTPEWMSV K
Sbjct: 61 IALKKRGKCAIRTPEWMSVEK 81

BLAST of CSPI04G09510 vs. NCBI nr
Match: XP_022925113.1 (DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQSDPHL LFSAEE+EFVAEDEMVEI+PNMRMDSL+LICGDYGPFYPQIATEVPLWLA
Sbjct: 1  MAGQSDPHLTLFSAEEIEFVAEDEMVEIVPNMRMDSLNLICGDYGPFYPQIATEVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSVGK 82
          IALKKRGKCAIR PEWMSV K
Sbjct: 61 IALKKRGKCAIRPPEWMSVEK 81

BLAST of CSPI04G09510 vs. TAIR 10
Match: AT3G12530.1 (PSF2 )

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-29
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLA 60
          MAGQ+DPH++LFS +EVEF+AEDE+VEI+PNM M+ L+ I GD+G F PQI T+VPLWLA
Sbjct: 1  MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61 IALKKRGKCAIRTPEWMSV 80
          +ALK+RGKC  R P WMSV
Sbjct: 61 VALKRRGKCTFRPPGWMSV 79

BLAST of CSPI04G09510 vs. TAIR 10
Match: AT3G12530.2 (PSF2 )

HSP 1 Score: 94.7 bits (234), Expect = 4.2e-20
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 20 VAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSV 79
          +AEDE+VEI+PNM M+ L+ I GD+G F PQI T+VPLWLA+ALK+RGKC  R P WMSV
Sbjct: 1  MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9C7A83.1e-2868.35DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana OX=3702 GN=GIN... [more]
Q9Y2482.5e-1760.29DNA replication complex GINS protein PSF2 OS=Homo sapiens OX=9606 GN=GINS2 PE=1 ... [more]
Q7ZT462.5e-1760.29DNA replication complex GINS protein PSF2 OS=Xenopus laevis OX=8355 GN=gins2 PE=... [more]
Q9D6005.5e-1758.82DNA replication complex GINS protein PSF2 OS=Mus musculus OX=10090 GN=Gins2 PE=1... [more]
Q54BL91.6e-1650.00Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium discoideum O... [more]
Match NameE-valueIdentityDescription
A0A0A0KVY89.7e-49100.00Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G114190 PE=4 S... [more]
A0A1S4E3Y05.9e-3895.06DNA replication complex GINS protein PSF2 OS=Cucumis melo OX=3656 GN=LOC10350116... [more]
A0A5D3C8I75.9e-3895.06DNA replication complex GINS protein PSF2 isoform X1 OS=Cucumis melo var. makuwa... [more]
A0A6J1HN136.5e-3792.59DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1HPD86.5e-3792.59DNA replication complex GINS protein PSF2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
Match NameE-valueIdentityDescription
XP_004137154.14.9e-3998.77DNA replication complex GINS protein PSF2 [Cucumis sativus] >KAE8649312.1 hypoth... [more]
XP_038905117.13.2e-3896.30DNA replication complex GINS protein PSF2 isoform X1 [Benincasa hispida] >XP_038... [more]
XP_008462891.11.2e-3795.06PREDICTED: DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo] >... [more]
TYK07564.11.2e-3795.06DNA replication complex GINS protein PSF2 isoform X1 [Cucumis melo var. makuwa][more]
XP_022925113.11.3e-3692.59DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT3G12530.12.2e-2968.35PSF2 [more]
AT3G12530.24.2e-2066.67PSF2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 53..80
e-value: 1.6E-5
score: 25.3
NoneNo IPR availableGENE3D3.40.5.50coord: 12..77
e-value: 1.1E-31
score: 110.6
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 12..71
IPR007257DNA replication complex GINS protein Psf2PANTHERPTHR12772DNA REPLICATION COMPLEX GINS PROTEIN PSF2coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09510.1CSPI04G09510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0044238 primary metabolic process
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus