CSPI04G09500 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G09500
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 7485353 .. 7485764 (+)
RNA-Seq Expression	CSPI04G09500
Synteny	CSPI04G09500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGTCACTAAAAGGGAAGGAATCTCATCCCTTAGACAAAATGATGGAGATGAGGTGTAATTCAATCGTAAGCACCACTAAGGAAGTCAAGAAGTCTCTCTCATTGAGGAAAAAGAAAGAAGCCCAAAAAGGTAAGCGGGTCCAACCGAACCAATCCAAATTCGTTCAGCAGCTAATCACTACACCCTGTTTCTTCTGATCAATTAGCACCTCCTTTAGTTGCAGTCTCAGAGCCCATTAATAATCCCGCAGGCAAGTGTTCAAGTAGTTCCTCTTCTTCTCATTCAACTTCATCATCAACCATCTCTTATTCGATCAGAGCTAGGTCTAAATCTGGGGTTAAGCAAAGGTCAAAAGCACACATAGCTTCACTTCCTTTCGAGCCATTTCCAAAACATTTGGTCTGA

mRNA sequence

ATGATGAAGTCACTAAAAGGGAAGGAATCTCATCCCTTAGACAAAATGATGGAGATGAGGTGTAATTCAATCGTAAGCACCACTAAGGAAGTCAAGAAGTCTCTCTCATTGAGGAAAAAGAAAGAAGCCCAAAAAGTCTCAGAGCCCATTAATAATCCCGCAGGCAAGTGTTCAAGTAGTTCCTCTTCTTCTCATTCAACTTCATCATCAACCATCTCTTATTCGATCAGAGCTAGGTCTAAATCTGGGGTTAAGCAAAGGTCAAAAGCACACATAGCTTCACTTCCTTTCGAGCCATTTCCAAAACATTTGGTCTGA

Coding sequence (CDS)

ATGATGAAGTCACTAAAAGGGAAGGAATCTCATCCCTTAGACAAAATGATGGAGATGAGGTGTAATTCAATCGTAAGCACCACTAAGGAAGTCAAGAAGTCTCTCTCATTGAGGAAAAAGAAAGAAGCCCAAAAAGTCTCAGAGCCCATTAATAATCCCGCAGGCAAGTGTTCAAGTAGTTCCTCTTCTTCTCATTCAACTTCATCATCAACCATCTCTTATTCGATCAGAGCTAGGTCTAAATCTGGGGTTAAGCAAAGGTCAAAAGCACACATAGCTTCACTTCCTTTCGAGCCATTTCCAAAACATTTGGTCTGA

Protein sequence

MMKSLKGKESHPLDKMMEMRCNSIVSTTKEVKKSLSLRKKKEAQKVSEPINNPAGKCSSSSSSSHSTSSSTISYSIRARSKSGVKQRSKAHIASLPFEPFPKHLV*

Homology

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BLAST of CSPI04G09500 vs. ExPASy TrEMBL
Match: A0A0A0KZC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114180 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MMKSLKGKESHPLDKMMEMRCNSIVSTTKEVKKSLSLRKKKEAQKVSEPINNPAGKCSSS 60
           MMKSLKGKESHPLDKMMEMRCNSIVSTTKEVKKSLSLRKKKEAQKVSEPINNPAGKCSSS
Sbjct: 1   MMKSLKGKESHPLDKMMEMRCNSIVSTTKEVKKSLSLRKKKEAQKVSEPINNPAGKCSSS 60

Query: 61  SSSSHSTSSSTISYSIRARSKSGVKQRSKAHIASLPFEPFPKHLV 106
           SSSSHSTSSSTISYSIRARSKSGVKQRSKAHIASLPFEPFPKHLV
Sbjct: 61  SSSSHSTSSSTISYSIRARSKSGVKQRSKAHIASLPFEPFPKHLV 105

The following BLAST results are available for this feature:

BLAST of CSPI04G09500 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G09500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZC7	1.9e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114180 PE=4 SV=1	[more]

BLAST of CSPI04G09500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI04G09500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G09500.1	CSPI04G09500.1	mRNA