Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA
mRNA sequence
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA
Coding sequence (CDS)
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA
Protein sequence
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE*
Homology
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match:
A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)
HSP 1 Score: 279.6 bits (714), Expect = 7.1e-72
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match:
A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)
HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+K++D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match:
A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 2.5e-45
Identity = 102/141 (72.34%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 140
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match:
A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDSMLE 143
DPY +S E
Sbjct: 185 DPYLNSQPE 193
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match:
A0A5D3DHL2 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001860 PE=4 SV=1)
HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370
Query: 62 SQEEEDQFLLGKNSIMTFIAGAKSEADL 87
S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398
BLAST of CSPI04G08790 vs. NCBI nr
Match:
KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])
HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
Query: 61 EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61 EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120
Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142
BLAST of CSPI04G08790 vs. NCBI nr
Match:
KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 0
Query: 1 MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTH 60
MYRFSLYFQV WIF W HQLS+RAKFKI KIL VKWWD ++E++I KWFKTN
Sbjct: 57 MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116
Query: 61 LSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFA 120
L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+K++D EDTRISS+S
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176
Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198
BLAST of CSPI04G08790 vs. NCBI nr
Match:
KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 191.4 bits (485), Expect = 5.3e-45
Identity = 102/141 (72.34%), Postives = 112/141 (79.43%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD +NEE+IAKWFKTN L
Sbjct: 58 YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117
Query: 62 SQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFAN 121
S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++ DD+K++D ED S+S N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177
Query: 122 DIDFDNDPYYNFDISDPYFDS 140
DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198
BLAST of CSPI04G08790 vs. NCBI nr
Match:
KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 162.2 bits (409), Expect = 3.4e-36
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0
Query: 17 SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSI 76
SHQLS+RAKFKIL KIL V+WWD +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65 SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124
Query: 77 MTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
MT I GAKSEADLQ VM+TV++ DD K++ ED SNS NDIDF+N+PYYNFDI
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184
Query: 137 DPYFDSMLE 143
DPY +S E
Sbjct: 185 DPYLNSQPE 193
BLAST of CSPI04G08790 vs. NCBI nr
Match:
TYK23161.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 0
Query: 2 YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370
Query: 62 SQEEEDQFLLGKNSIMTFIAGAKSEADL 87
S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KXT5 | 7.1e-72 | 97.18 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1 | [more] |
A0A5A7UEA0 | 1.8e-46 | 70.42 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5A7U8X4 | 2.5e-45 | 72.34 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5D3CI63 | 1.7e-36 | 65.89 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DHL2 | 1.2e-26 | 76.14 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
Match Name | E-value | Identity | Description | |
KGN53659.1 | 1.5e-71 | 97.18 | hypothetical protein Csa_014527 [Cucumis sativus] | [more] |
KAA0051819.1 | 3.6e-46 | 70.42 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... | [more] |
KAA0050626.1 | 5.3e-45 | 72.34 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... | [more] |
KAA0026133.1 | 3.4e-36 | 65.89 | hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593... | [more] |
TYK23161.1 | 2.5e-26 | 76.14 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |