CSPI04G08790 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G08790
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposable element Tf2
LocationChr4: 6539911 .. 6540339 (+)
RNA-Seq ExpressionCSPI04G08790
SyntenyCSPI04G08790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

mRNA sequence

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

Coding sequence (CDS)

ATGTATAGATTCTCTCTCTACTTCCAAGTGCTCTGGATTTTCTACTGGAGCCACCAACTATCAACCAGAGCAAAGTTCAAGATCTTAAGAAAGATCTTGCATGTCAAGTGGTGGGATAACGACTTAGTGAATGAAGAGAAAATAGCAAAGTGGTTCAAGACAAACACTCATCTTTCTCAAGAAGAAGAAGATCAATTCCTTCTTGGGAAAAATTCAATCATGACCTTCATCGCTGGAGCAAAATCTGAAGCAGATCTTCAAACGGTCATGGAAACAGTCATCCACACCATTTATGATGACGACAAAAAAAATGATGTTGAAGATACCAGAATTTCTTCAAACTCATTTGCTAATGATATTGATTTTGATAATGATCCTTATTACAATTTCGATATTAGCGATCCCTATTTCGATTCCATGTTAGAATGA

Protein sequence

MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDISDPYFDSMLE*
Homology
BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.1e-72
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
           EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
           DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 0

Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+K++D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.5e-45
Identity = 102/141 (72.34%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 140
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.7e-36
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0

Query: 17  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDSMLE 143
           DPY +S  E
Sbjct: 185 DPYLNSQPE 193

BLAST of CSPI04G08790 vs. ExPASy TrEMBL
Match: A0A5D3DHL2 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001860 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 0

Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD      +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370

Query: 62  SQEEEDQFLLGKNSIMTFIAGAKSEADL 87
           S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398

BLAST of CSPI04G08790 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 1.5e-71
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0

Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDNDLVNEEKIAKWFKTNTHLSQ 60
           MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKIL VKWWDNDLVNEEKIAKWFKTNTHLSQ
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDNDLVNEEKIAKWFKTNTHLSQ 60

Query: 61  EEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDI 120
           EEEDQFLL KNSIMTFIAGAKSEADLQTVMETVIHTIYDDDK+NDVEDTRISSNSFANDI
Sbjct: 61  EEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDI 120

Query: 121 DFDNDPYYNFDISDPYFDSMLE 143
           DFDNDPYYNFDISDPYFDS+LE
Sbjct: 121 DFDNDPYYNFDISDPYFDSLLE 142

BLAST of CSPI04G08790 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 0

Query: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTH 60
           MYRFSLYFQV WIF W HQLS+RAKFKI  KIL VKWWD      ++E++I KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  LSQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFA 120
           L +EEEDQFLL KNSIMT IAGAKSEADLQ +M+TV+H I+DD+K++D EDTRISS+S  
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

Query: 121 NDIDFDNDPYYNFDISDPYFDS 140
           N+ID DND YYNFDI DPY DS
Sbjct: 177 NNIDSDNDLYYNFDIFDPYLDS 198

BLAST of CSPI04G08790 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-45
Identity = 102/141 (72.34%), Postives = 112/141 (79.43%), Query Frame = 0

Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF W HQLS+RAKFKIL KIL VKWWD      +NEE+IAKWFKTN  L
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  SQEEEDQFLLGKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFAN 121
           S+EEEDQFLL KNSIMT IAGAKSEADLQ VMETV++   DD+K++D ED    S+S  N
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

Query: 122 DIDFDNDPYYNFDISDPYFDS 140
           DIDF NDPYYNFDISD Y DS
Sbjct: 178 DIDFVNDPYYNFDISDLYLDS 198

BLAST of CSPI04G08790 vs. NCBI nr
Match: KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.4e-36
Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0

Query: 17  SHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHLSQEEEDQFLLGKNSI 76
           SHQLS+RAKFKIL KIL V+WWD      +NEE+IAKWFK N HLS+EEEDQFLL KNS+
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  MTFIAGAKSEADLQTVMETVIHTIYDDDKKNDVEDTRISSNSFANDIDFDNDPYYNFDIS 136
           MT I GAKSEADLQ VM+TV++   DD K++  ED    SNS  NDIDF+N+PYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

Query: 137 DPYFDSMLE 143
           DPY +S  E
Sbjct: 185 DPYLNSQPE 193

BLAST of CSPI04G08790 vs. NCBI nr
Match: TYK23161.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 0

Query: 2   YRFSLYFQVLWIFYWSHQLSTRAKFKILRKILHVKWWDN---DLVNEEKIAKWFKTNTHL 61
           YRFSLYFQV WIF WSHQLS+RAKFKIL KIL V WWD      +N+E+IAKW KTN HL
Sbjct: 311 YRFSLYFQVPWIFCWSHQLSSRAKFKILGKILRVIWWDKYDYSRLNKEQIAKWVKTNAHL 370

Query: 62  SQEEEDQFLLGKNSIMTFIAGAKSEADL 87
           S+EEEDQFLL KNSIMT IAGAKSE DL
Sbjct: 371 SREEEDQFLLTKNSIMTSIAGAKSEEDL 398

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXT57.1e-7297.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1[more]
A0A5A7UEA01.8e-4670.42Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7U8X42.5e-4572.34Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3CI631.7e-3665.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DHL21.2e-2676.14Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
Match NameE-valueIdentityDescription
KGN53659.11.5e-7197.18hypothetical protein Csa_014527 [Cucumis sativus][more]
KAA0051819.13.6e-4670.42Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... [more]
KAA0050626.15.3e-4572.34Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... [more]
KAA0026133.13.4e-3665.89hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593... [more]
TYK23161.12.5e-2676.14Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08790.1CSPI04G08790.1mRNA