CSPI04G08600 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G08600
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CCHC-type domain-containing protein
Location	Chr4: 6372059 .. 6372676 (-)
RNA-Seq Expression	CSPI04G08600
Synteny	CSPI04G08600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTTGATGATCAATTTCAAGTTGCGGTTATTATTAATAAATTACCTCATCTATGGAAGGATTTAAAAAATACTCTAAGGCACAAAACCAAGGAGTTCTCGTTGGAAAGCCTCATCACATGATTAAGGATTGAGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGTACAAATTGTTTGCTACAATTGTAATAAGCCCGAAAACTTAGCTAAAAATTGTAGAAATAGGAAGTGTTCTGCTGCGCAGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

mRNA sequence

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

Coding sequence (CDS)

ATGTCGCTTGATGATCAATTTCAAGTTGCGGAAGAGGCAAGAAGACATGACCAAAAAGAAGAGGTGAACGCAATTCCTAGAAAGAAGTCAAACACAGTGTTGAAACCAGATTTGAAGCCTAAAGGAAATCAAATGAAATGCGAATTCAACAAGCAAAACAACTTGCAAAGACCCCAATCCAGAAGTACGGCGAACCTGGTAGAAGATGAATATGTAGCTATGATTTTTGAAGTTAATGTCATTAGAGGGACCGAAGGTTGGTGGCTAGACACAGGTGCATCTCGCCATGTCTGTCATAACCTTAGTTTATTTAGAAATTATAACGAGATAAAGGATAAGAATATCTTTTTAGGAGATAATCACACAATTAAGGTAGCAGGCGTTAGAGAAGTAGAACTGAAATTCACAACTGGCAAAACACTTGTGTAG

Protein sequence

MSLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRSTANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV*

Homology

[Close]

BLAST of CSPI04G08600 vs. ExPASy TrEMBL
Match: A0A5D3DRT2 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00180 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           SL  + ++ EEAR+H++KEEVNAIPRKK   VLKPDLKPKGN+MK E NKQNN   PQSR
Sbjct: 152 SLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESNKQNN---PQSR 211

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           STANL+EDE VAMI EVNVIRG EGWWLDTGAS HVCH+LS+FR YNE+KDK I LGD+H
Sbjct: 212 STANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDKKILLGDHH 271

Query: 122 TIKVAGVREVELKFTTGKTLV 143
           T KVAG+ +VELKFT+GK LV
Sbjct: 272 TTKVAGIGKVELKFTSGKMLV 289

[Close]

BLAST of CSPI04G08600 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.5e-49
Identity = 100/141 (70.92%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           +L  + ++ EEA++HD+KEEVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS 
Sbjct: 186 NLTTRLRIEEEAKKHDKKEEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNN---PQST 245

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           S ANL+E+E VAMI EVNVI G+EGWWLDTGASRHVCH+LS+FR YNE+KDKNI LGD+H
Sbjct: 246 SMANLIENELVAMISEVNVIGGSEGWWLDTGASRHVCHDLSIFRKYNEVKDKNILLGDHH 305

Query: 122 TIKVAGVREVELKFTTGKTLV 143
             KV G+ EVELKFT+GKTLV
Sbjct: 306 ITKVVGIEEVELKFTSGKTLV 323

[Close]

BLAST of CSPI04G08600 vs. ExPASy TrEMBL
Match: A0A5A7UN04 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00700 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.5e-48
Identity = 105/159 (66.04%), Postives = 117/159 (73.58%), Query Frame = 0


Query: 11  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST------- 70
           EEAR+HDQKEEVN IPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRST       
Sbjct: 114 EEARKHDQKEEVNVIPRKKPTAVLKPDLKPKGNKMKRESNKQNN---PQSRSTVQIVCYN 173

Query: 71  --------------------ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSL 130
                               ANL+EDE +AMIFEVNVI G++GWWLDTGASRHVCH+LSL
Sbjct: 174 CNKPGHLARNCRNRSRPAAQANLIEDELIAMIFEVNVIGGSKGWWLDTGASRHVCHDLSL 233

Query: 131 FRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           FR YNE+KDKNI LGD+HT K+AG+ EVELKFT+GKTLV
Sbjct: 234 FRKYNEVKDKNILLGDHHTSKMAGIGEVELKFTSGKTLV 269

[Close]

BLAST of CSPI04G08600 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.9e-46
Identity = 96/141 (68.09%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           +L  + ++ EEA++ D+K+EVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS 
Sbjct: 186 NLITRLKIEEEAKKRDKKKEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNN---PQST 245

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           S ANL+E+E VAMI EVNVI G+EGWWLDT ASRHVCH+LS+FR YNE+KDKNI LGD+H
Sbjct: 246 SMANLIENELVAMISEVNVIGGSEGWWLDTNASRHVCHDLSIFRKYNEVKDKNILLGDHH 305

Query: 122 TIKVAGVREVELKFTTGKTLV 143
             KV G+ EVEL+FT+GKTLV
Sbjct: 306 ITKVVGIEEVELRFTSGKTLV 323

[Close]

BLAST of CSPI04G08600 vs. ExPASy TrEMBL
Match: A0A5A7T4T3 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00670 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.7e-46
Identity = 105/168 (62.50%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           SL  + ++ E+AR+HD+KEEVNAI RKK   VLK DLKPKGN+MK E NKQNN   PQ R
Sbjct: 36  SLITRLRIEEKARKHDKKEEVNAILRKKPTAVLKLDLKPKGNKMKRESNKQNN---PQFR 95

Query: 62  ST---------------------------ANLVEDEYVAMIFEVNVIRGTEGWWLDTGAS 121
           ST                           ANLVEDE +AMI EVNVI G+EGWWLD GAS
Sbjct: 96  STVQIVCYNCNKPGHLARNSRNRSRPVMQANLVEDELIAMISEVNVIEGSEGWWLDIGAS 155

Query: 122 RHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           RHVCH+LSLFR YNE+KDKNI LGD+HT KVAG+REVELKFT+GKTLV
Sbjct: 156 RHVCHDLSLFRKYNEVKDKNILLGDHHTTKVAGIREVELKFTSGKTLV 200

[Close]

BLAST of CSPI04G08600 vs. NCBI nr
Match: KAA0059670.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 3.2e-50
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           SL  + ++ EEAR+H++KEEVNAIPRKK   VLKPDLKPKGN+MK E NKQNN   PQSR
Sbjct: 152 SLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESNKQNN---PQSR 211

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           STANL+EDE VAMI EVNVIRG EGWWLDTGAS HVCH+LS+FR YNE+KDK I LGD+H
Sbjct: 212 STANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDKKILLGDHH 271

Query: 122 TIKVAGVREVELKFTTGKTLV 143
           T KVAG+ +VELKFT+GK LV
Sbjct: 272 TTKVAGIGKVELKFTSGKMLV 289

[Close]

BLAST of CSPI04G08600 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-48
Identity = 100/141 (70.92%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           +L  + ++ EEA++HD+KEEVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS 
Sbjct: 186 NLTTRLRIEEEAKKHDKKEEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNN---PQST 245

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           S ANL+E+E VAMI EVNVI G+EGWWLDTGASRHVCH+LS+FR YNE+KDKNI LGD+H
Sbjct: 246 SMANLIENELVAMISEVNVIGGSEGWWLDTGASRHVCHDLSIFRKYNEVKDKNILLGDHH 305

Query: 122 TIKVAGVREVELKFTTGKTLV 143
             KV G+ EVELKFT+GKTLV
Sbjct: 306 ITKVVGIEEVELKFTSGKTLV 323

[Close]

BLAST of CSPI04G08600 vs. NCBI nr
Match: KAA0054951.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK22740.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 105/159 (66.04%), Postives = 117/159 (73.58%), Query Frame = 0


Query: 11  EEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSRST------- 70
           EEAR+HDQKEEVN IPRKK   VLKPDLKPKGN+MK E NKQNN   PQSRST       
Sbjct: 114 EEARKHDQKEEVNVIPRKKPTAVLKPDLKPKGNKMKRESNKQNN---PQSRSTVQIVCYN 173

Query: 71  --------------------ANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSL 130
                               ANL+EDE +AMIFEVNVI G++GWWLDTGASRHVCH+LSL
Sbjct: 174 CNKPGHLARNCRNRSRPAAQANLIEDELIAMIFEVNVIGGSKGWWLDTGASRHVCHDLSL 233

Query: 131 FRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           FR YNE+KDKNI LGD+HT K+AG+ EVELKFT+GKTLV
Sbjct: 234 FRKYNEVKDKNILLGDHHTSKMAGIGEVELKFTSGKTLV 269

[Close]

BLAST of CSPI04G08600 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 8.1e-46
Identity = 96/141 (68.09%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           +L  + ++ EEA++ D+K+EVNAIPRKK   VLK DLKPKGN+MK  FNKQNN   PQS 
Sbjct: 186 NLITRLKIEEEAKKRDKKKEVNAIPRKKFTAVLKSDLKPKGNKMKQGFNKQNN---PQST 245

Query: 62  STANLVEDEYVAMIFEVNVIRGTEGWWLDTGASRHVCHNLSLFRNYNEIKDKNIFLGDNH 121
           S ANL+E+E VAMI EVNVI G+EGWWLDT ASRHVCH+LS+FR YNE+KDKNI LGD+H
Sbjct: 246 SMANLIENELVAMISEVNVIGGSEGWWLDTNASRHVCHDLSIFRKYNEVKDKNILLGDHH 305

Query: 122 TIKVAGVREVELKFTTGKTLV 143
             KV G+ EVEL+FT+GKTLV
Sbjct: 306 ITKVVGIEEVELRFTSGKTLV 323

[Close]

BLAST of CSPI04G08600 vs. NCBI nr
Match: KAA0036465.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK00022.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.8e-45
Identity = 105/168 (62.50%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 2   SLDDQFQVAEEARRHDQKEEVNAIPRKKSNTVLKPDLKPKGNQMKCEFNKQNNLQRPQSR 61
           SL  + ++ E+AR+HD+KEEVNAI RKK   VLK DLKPKGN+MK E NKQNN   PQ R
Sbjct: 36  SLITRLRIEEKARKHDKKEEVNAILRKKPTAVLKLDLKPKGNKMKRESNKQNN---PQFR 95

Query: 62  ST---------------------------ANLVEDEYVAMIFEVNVIRGTEGWWLDTGAS 121
           ST                           ANLVEDE +AMI EVNVI G+EGWWLD GAS
Sbjct: 96  STVQIVCYNCNKPGHLARNSRNRSRPVMQANLVEDELIAMISEVNVIEGSEGWWLDIGAS 155

Query: 122 RHVCHNLSLFRNYNEIKDKNIFLGDNHTIKVAGVREVELKFTTGKTLV 143
           RHVCH+LSLFR YNE+KDKNI LGD+HT KVAG+REVELKFT+GKTLV
Sbjct: 156 RHVCHDLSLFRKYNEVKDKNILLGDHHTTKVAGIREVELKFTSGKTLV 200

The following BLAST results are available for this feature:

BLAST of CSPI04G08600 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G08600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DRT2	1.5e-50	73.76	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111...	[more]
A0A5A7UA92	8.5e-49	70.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UN04	5.5e-48	66.04	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold116...	[more]
A0A5D3BDS3	3.9e-46	68.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T4T3	8.7e-46	62.50	Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360...	[more]

BLAST of CSPI04G08600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059670.1	3.2e-50	73.76	putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein...	[more]
KAA0050409.1	1.7e-48	70.92	hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa]	[more]
KAA0054951.1	1.1e-47	66.04	putative Polyprotein [Cucumis melo var. makuwa] >TYK22740.1 putative Polyprotein...	[more]
TYJ98000.1	8.1e-46	68.09	hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa]	[more]
KAA0036465.1	1.8e-45	62.50	putative Polyprotein [Cucumis melo var. makuwa] >TYK00022.1 putative Polyprotein...	[more]

BLAST of CSPI04G08600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 11..141
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 11..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08600.1	CSPI04G08600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding