CSPI04G08450 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G08450
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGTP diphosphokinase
LocationChr4: 6201855 .. 6203510 (+)
RNA-Seq ExpressionCSPI04G08450
SyntenyCSPI04G08450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGGTATTATTAAAAAAATATATTTAGATTAAAACCCATCATTAAATCTCTTATCCCTCCCCCATGGAAAAAAACCATTATTAAAGTTAGGTTATGCTTTTGAATATTAAGAGCATGGTGTTTTTTGTTTGTGGTATTTCTCATGAGTGGGGATCTTAAATATTAGAAGGTAAGAACTTAAGATATCCTGGATGTGTGATAAGTTGAAGCCACTAAGAATATGATAAGCGTATAAAGTTTTTAAATTTATAGGAGTACAACCTGGACGACCTTTATCTTGGCTTTTCTATTCTTCTTCATGGTTTCTTTTACCCTGTCATAATATTGTTTTGATATTACATCTGTGTCATGCCTCAATTTTCCCCCATAAATTGTGATATTCTTAATGCTCCTTTTGGAATATAGTCATCAATATCAATTTATACAATTGTAATCACAGTGTAGTGAAAGACCCACTGCTCTCTACACCTATCTTAGTGAGGCTGCTTGAGACATGTGCCTCAGCGCATGTGCTGCACTGCTCCTAGAGCCCCAAGCCTTCTATTTATTTATAATTTTTCTAATTATTAAGGAATAAATGCATGAAACTTTTTAAAGCAGAAAATATGGTTGGTAAACTTTTTTTGAAAAGGAAACAAGCTTCAATATTATTAATAAACACAAAGTACAAGAGAGTTATACATTGAGAATGACAGAGAAGCCTAGAAATAGGGAAGAGAGAGAGGATCAGTAGGTGCACCTGGACATCTCAACTAGATTGACACCCCCTTAGCACTAAACTAAGAAAGAATATACTTTAACCTGCACTGACCATTGATGATGTGGTCTCCCTCTTTTCACCCTAAAGCAAGAAGATACCTTTGTTTGAATGTTAAAGGTGTCTTTTCTCATACCTTTGATATTTCTACACACACTGAAGATTTATGTCTAAGAATGATGGTTCTGACTGTCTTGGCATTGTGGCAGGAACCAGAAAGTATCCTCCCCCTAATAGAAACAGTGCCAGTGAATGAACATTTCTGATCAATATGGGTCTTCAATTGCGTCTCTCAGAGTCTTGAACCCCAAACTCTTCTAGAACTAATTTTCTCCGTTTCATGGCCTCTTTCCTTTCTCCAATTTCTTCAAGCTGAGAAACACCTTGGGCTGCTTCAGAAAACCCTTCTCCATCTGTTTTGCCATGATTAGGGATTTGAAGACCGATAGAAGCGACCTTAGAGTCTGATACAAAGGAAAAACTCTAGAGGCAGCAGAGGAATAAATGCATGAATGTTGTTTACATTTTCTCTATTGCGCTCTTCACTGAAAGAGCTTGTGTTTTTCATTTGTTTGTTCTTTAGGCCATGGAGGGCTGGTGCGTTAGTGCACCTCTAGTTTTAAACAACACTATGTAACCATATTATATACTTTCTGCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

mRNA sequence

ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

Coding sequence (CDS)

ATGTCTCGTCATCTTATTAATTTAAAGTTCACACTGCAGGCCGTTGACACAGTTGTGGCTGGAATTCTCCATGACATAGTTGATGATACATGTCAAAAGTTGCACAGCATAGAAGAAGAATTTGGTGATGAAGTAGCCAAGTTGGTGGCTGGTGTCTCTAGGTTAAGTTACATAAACCAGTTGCTGCGCAGACATCGCCGAGTTAACTTGAACCCAGGTTCCTTAGGGCATGAAGAGGTATTG

Protein sequence

MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNPGSLGHEEVL
Homology
BLAST of CSPI04G08450 vs. ExPASy Swiss-Prot
Match: Q49640 (Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN) OX=272631 GN=relA PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-05
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 15  VDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYI 59
           + T+VA +LHD V+DT   L ++ EEFGDEV  LV GV++L  +
Sbjct: 120 ITTLVAALLHDTVEDTGYTLEALSEEFGDEVGHLVDGVTKLDRV 163

BLAST of CSPI04G08450 vs. ExPASy Swiss-Prot
Match: O34098 (Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Spiroplasma citri OX=2133 GN=spoT PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.1e-05
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 17  TVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSY 58
           T++AG+LHD+++DT      ++E FG E+A LV GV+++SY
Sbjct: 69  TLIAGLLHDVLEDTPATFEELQELFGIEIANLVEGVTKVSY 109

BLAST of CSPI04G08450 vs. ExPASy Swiss-Prot
Match: P66015 (Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=relA PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 17  TVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYI 59
           T+VA +LHD V+DT   L ++ EEFG+EV  LV GV++L  +
Sbjct: 125 TLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV 166

BLAST of CSPI04G08450 vs. ExPASy Swiss-Prot
Match: P9WHG8 (Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=relA PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 17  TVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYI 59
           T+VA +LHD V+DT   L ++ EEFG+EV  LV GV++L  +
Sbjct: 73  TLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV 114

BLAST of CSPI04G08450 vs. ExPASy Swiss-Prot
Match: P9WHG9 (Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=relA PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 17  TVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYI 59
           T+VA +LHD V+DT   L ++ EEFG+EV  LV GV++L  +
Sbjct: 73  TLVAALLHDTVEDTGYTLEALTEEFGEEVGHLVDGVTKLDRV 114

BLAST of CSPI04G08450 vs. ExPASy TrEMBL
Match: A0A0A0KVK1 (GTP diphosphokinase OS=Cucumis sativus OX=3659 GN=Csa_4G092450 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60
          MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ
Sbjct: 1  MSRHLINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQ 60

Query: 61 LLRRHRRVNLNPGSLGHEE 80
          LLRRHRRVNLNPGSLGHEE
Sbjct: 61 LLRRHRRVNLNPGSLGHEE 79

BLAST of CSPI04G08450 vs. ExPASy TrEMBL
Match: A0A1S4E3Y5 (GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103501185 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.1e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 186 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 245

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 246 GSLGHEE 252

BLAST of CSPI04G08450 vs. ExPASy TrEMBL
Match: A0A1S3CI10 (GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103501185 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.1e-28
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 13 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
          +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 29 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 88

Query: 73 GSLGHEE 80
          GSLGHEE
Sbjct: 89 GSLGHEE 95

BLAST of CSPI04G08450 vs. ExPASy TrEMBL
Match: A0A6J1CGS2 (GTP diphosphokinase OS=Momordica charantia OX=3673 GN=LOC111011522 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.7e-27
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 5  LINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRR 64
          L++L     AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRR
Sbjct: 5  LLDLILLYGAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRR 64

Query: 65 HRRVNLNPGSLGHEE 80
          HRRVN+N GSLGHEE
Sbjct: 65 HRRVNVNQGSLGHEE 79

BLAST of CSPI04G08450 vs. ExPASy TrEMBL
Match: A0A6J1CIN2 (GTP diphosphokinase OS=Momordica charantia OX=3673 GN=LOC111011522 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.8e-27
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVN+N 
Sbjct: 201 EAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNVNQ 260

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 261 GSLGHEE 267

BLAST of CSPI04G08450 vs. NCBI nr
Match: XP_011653335.1 (uncharacterized protein LOC101208449 [Cucumis sativus] >XP_011653336.1 uncharacterized protein LOC101208449 [Cucumis sativus] >KGN53638.2 hypothetical protein Csa_014497 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 3.3e-28
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 186 RAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 245

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 246 GSLGHEE 252

BLAST of CSPI04G08450 vs. NCBI nr
Match: XP_008462918.1 (PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo] >XP_016902945.1 PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo] >XP_016902946.1 PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 186 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 245

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 246 GSLGHEE 252

BLAST of CSPI04G08450 vs. NCBI nr
Match: XP_008462920.1 (PREDICTED: uncharacterized protein LOC103501185 isoform X3 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 13 QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
          +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP
Sbjct: 29 RAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 88

Query: 73 GSLGHEE 80
          GSLGHEE
Sbjct: 89 GSLGHEE 95

BLAST of CSPI04G08450 vs. NCBI nr
Match: XP_022141015.1 (uncharacterized protein LOC111011522 isoform X4 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 5  LINLKFTLQAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRR 64
          L++L     AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRR
Sbjct: 5  LLDLILLYGAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRR 64

Query: 65 HRRVNLNPGSLGHEE 80
          HRRVN+N GSLGHEE
Sbjct: 65 HRRVNVNQGSLGHEE 79

BLAST of CSPI04G08450 vs. NCBI nr
Match: XP_022141014.1 (uncharacterized protein LOC111011522 isoform X3 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-26
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 13  QAVDTVVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNLNP 72
           +AVDTVVAGILHDIVDDTCQ LHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVN+N 
Sbjct: 67  EAVDTVVAGILHDIVDDTCQNLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRHRRVNVNQ 126

Query: 73  GSLGHEE 80
           GSLGHEE
Sbjct: 127 GSLGHEE 133

BLAST of CSPI04G08450 vs. TAIR 10
Match: AT1G54130.1 (RELA/SPOT homolog 3 )

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-05
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 18  VVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 66
           VVAGILHD +DD+      I   FG  VA LV GVS+LS +++L R +
Sbjct: 258 VVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKLAREN 305

BLAST of CSPI04G08450 vs. TAIR 10
Match: AT3G14050.1 (RELA/SPOT homolog 2 )

HSP 1 Score: 45.4 bits (106), Expect = 2.5e-05
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 18  VVAGILHDIVDDTCQKLHSIEEEFGDEVAKLVAGVSRLSYINQLLRRH 66
           VVAG+LHD +DD+      I   FG  VA LV GVS+LS +++L R +
Sbjct: 254 VVAGLLHDTIDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLAREN 301

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q496403.1e-0550.00Probable GTP pyrophosphokinase OS=Mycobacterium leprae (strain TN) OX=272631 GN=... [more]
O340989.1e-0546.34Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Spiroplasma citri OX... [more]
P660152.0e-0450.00Probable GTP pyrophosphokinase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2... [more]
P9WHG82.0e-0450.00Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Mycobacterium tuberculosis (str... [more]
P9WHG92.0e-0450.00Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Mycobacterium tuberculosis (str... [more]
Match NameE-valueIdentityDescription
A0A0A0KVK16.1e-36100.00GTP diphosphokinase OS=Cucumis sativus OX=3659 GN=Csa_4G092450 PE=3 SV=1[more]
A0A1S4E3Y56.1e-2897.01GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103501185 PE=3 SV=1[more]
A0A1S3CI106.1e-2897.01GTP diphosphokinase OS=Cucumis melo OX=3656 GN=LOC103501185 PE=3 SV=1[more]
A0A6J1CGS26.7e-2786.67GTP diphosphokinase OS=Momordica charantia OX=3673 GN=LOC111011522 PE=3 SV=1[more]
A0A6J1CIN28.8e-2794.03GTP diphosphokinase OS=Momordica charantia OX=3673 GN=LOC111011522 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_011653335.13.3e-2898.51uncharacterized protein LOC101208449 [Cucumis sativus] >XP_011653336.1 uncharact... [more]
XP_008462918.11.3e-2797.01PREDICTED: uncharacterized protein LOC103501185 isoform X1 [Cucumis melo] >XP_01... [more]
XP_008462920.11.3e-2797.01PREDICTED: uncharacterized protein LOC103501185 isoform X3 [Cucumis melo][more]
XP_022141015.11.4e-2686.67uncharacterized protein LOC111011522 isoform X4 [Momordica charantia][more]
XP_022141014.11.8e-2694.03uncharacterized protein LOC111011522 isoform X3 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G54130.11.9e-0550.00RELA/SPOT homolog 3 [more]
AT3G14050.12.5e-0547.92RELA/SPOT homolog 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3210.10Hypothetical protein af1432coord: 2..74
e-value: 3.2E-13
score: 51.8
NoneNo IPR availablePFAMPF13328HD_4coord: 15..63
e-value: 3.5E-12
score: 46.4
NoneNo IPR availablePANTHERPTHR21262:SF31OS02G0699400 PROTEINcoord: 12..70
NoneNo IPR availablePANTHERPTHR21262GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASEcoord: 12..70
NoneNo IPR availableSUPERFAMILY109604HD-domain/PDEase-likecoord: 14..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08450.1CSPI04G08450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015969 guanosine tetraphosphate metabolic process
biological_process GO:0016310 phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0008728 GTP diphosphokinase activity
molecular_function GO:0016301 kinase activity