CSPI04G08370 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G08370
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 6135702 .. 6135866 (+)
RNA-Seq ExpressionCSPI04G08370
SyntenyCSPI04G08370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

mRNA sequence

ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

Coding sequence (CDS)

ATGAAGAATCCAAACAATAATCCTACCAACCAACAACAGGACCCAGATCAGAACCCTGCTTACCTTACCCATGATTTAGACCATCCCATCGGGTCATATGCATCACCAAGCTTGTACGATTTCAACCCAGGCATAACATCTCCTGTGTTTAGGAAAGATTCATGA

Protein sequence

MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS*
Homology
BLAST of CSPI04G08370 vs. ExPASy TrEMBL
Match: A0A0A0KVN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091895 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS
Sbjct: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 54

BLAST of CSPI04G08370 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.4e-06
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0

Query: 3  NPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVF 51
          N  NNP   Q   +QNPAYL HDLD PI SYASP+LYDFNPGI    F
Sbjct: 2  NNQNNPA-YQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAF 48

BLAST of CSPI04G08370 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 1  MKNPNNN--PTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          M N NN   P NQ      NP YL  D D PI SYASP+LYDFNPGI  P F +++
Sbjct: 1  MNNQNNQGIPANQAAQ-GANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENT 55

BLAST of CSPI04G08370 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 29/57 (50.88%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 3  NPNNNPTNQ-----QQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          NP  N  N+     Q   +QNP YL H +D PI SYAS +LYDFNP IT P F ++S
Sbjct: 8  NPIENQNNKGVATNQNAQEQNPTYLAHYMDKPIRSYASQNLYDFNPCITYPTFGENS 64

BLAST of CSPI04G08370 vs. NCBI nr
Match: KGN53623.1 (hypothetical protein Csa_014835 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 4.8e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS
Sbjct: 1  MKNPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 54

BLAST of CSPI04G08370 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 9.2e-06
Identity = 31/48 (64.58%), Postives = 33/48 (68.75%), Query Frame = 0

Query: 3  NPNNNPTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVF 51
          N  NNP   Q   +QNPAYL HDLD PI SYASP+LYDFNPGI    F
Sbjct: 2  NNQNNPA-YQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAF 48

BLAST of CSPI04G08370 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-04
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 1  MKNPNNN--PTNQQQDPDQNPAYLTHDLDHPIGSYASPSLYDFNPGITSPVFRKDS 55
          M N NN   P NQ      NP YL  D D PI SYASP+LYDFNPGI  P F +++
Sbjct: 1  MNNQNNQGIPANQAAQ-GANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENT 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVN82.3e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091895 PE=4 SV=1[more]
A0A5A7UDN84.4e-0664.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2U71.4e-0453.57Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7U2F05.4e-0450.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KGN53623.14.8e-23100.00hypothetical protein Csa_014835 [Cucumis sativus][more]
KAA0051815.19.2e-0664.58hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
KAA0062403.13.0e-0453.57putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G08370.1CSPI04G08370.1mRNA