CSPI04G08080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G08080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like
Location	Chr4: 5833584 .. 5835371 (+)
RNA-Seq Expression	CSPI04G08080
Synteny	CSPI04G08080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCGTGAGGAACTTCTCTACCCGTTCCACTTCTTCGTCTATCAAAGATCCCAATCCTAACTGGTCTAATCGACCACTCATGGAGACCATATTGCTTGATGGCTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAACAACTCACGAGGGATGAGATTATCGACAGCTATATAAAAACGCTTGCCATTGTTGTCTGAAGGTTAATTCTCATTTTCGTATATTGTATTGAATCTCTCTCTCTCTCTTTCCTCCCAACGTTGGGCTACCCTGAATCTGATGATTGCATTTATTCGTGTCTCTTCTGTGTCTTTTTTTCTTCGTTGTGTTGTTCTTGGCTATGTCTTTGTTTTGTATTGATGATATGAAGCTGTACCTTTTCCTCTTCAGAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTTCGAAGGTTATTCCTGACCCCATTAAGTATGCAAATAATCATTTTATCTCTTTTGGTGTCTAATTTTACAGTCCTCACTCTTTAGTTTTGAAAAGAGGTCAGTGGTTCTGAAGAAGGCTTTATTTCAATTTAAAGCTACTAGAAGTTAAAATTTTCATAATATCATATGTCTTGTTCATTATACATTTTTCTCAGAAAAGAAGTTTGAAATATGTCATTCAAAGATAGTAAGTAGCTTTTCTCTTTACAAAAATGTAGACTATTGAGGGGATAGAATGTTAGCTAACTTGAAAAGTTGAAGCTCTTGTATTGTATGATGGTTGAGGATCCTGACTCATTCAGGTCACATTCCTAAGATGATAGAAAGTTAAAAAACTTATCTAAGATTGCAATGCACTCTTGAGCAGACTGTCAATGCACTCTTAATTTGAAAGCCAGTATCTTTTTGTTGTAGTGTCTCCCTTGTTTTGGTTCACTTAAGGCTACAACTATGTTACCTTATTTTGGAGTTGTACAGAACTGTTATCTGACTTTCCGTGTATTTTTTCCCTTTGGCAGGGGAGCCTTTTATAAACGGACAAGCTGCTCCGTATGACCCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAGGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTATACCCCTCCCAACAACTTTAGTCCTACCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGTTATCCGAACAATTTTAACAGACCACTGCCGCCGCCACCACCGTACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCTCCACCACCGAACAACTTTAACGGACCACCACCACCATCAAACCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAA

mRNA sequence

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTTCGAAGGGGAGCCTTTTATAAACGGACAAGCTGCTCCGTATGACCCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAGGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTATACCCCTCCCAACAACTTTAGTCCTACCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGTTATCCGAACAATTTTAACAGACCACTGCCGCCGCCACCACCGTACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCTCCACCACCGAACAACTTTAACGGACCACCACCACCATCAAACCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAA

Coding sequence (CDS)

ATGGCGACTCAGCTCTTCTCTTTGTTTTCACGTTCCTTTCTCACTCCACCGCAGTCCCCCATCTCCGTCTCTTCTCACTCCTCTTCCTCCCTTCTCCGCCGCCTCCCTCCCCTCGCTGCTATACTCACCGCTGATTTCCCGTCACTCTGCTGCACCGAGCAGCTGCCTAAGGTTCGTTGGGTCTTACCTGATTCATACTTGGACGTTAAGAATAAAGATTTCGAAGGGGAGCCTTTTATAAACGGACAAGCTGCTCCGTATGACCCGAAGTACCACGAAGAATGGATTAGAAACAATGCTAAAGCAAATAGTAGGCGTGATGTTAATGGTAGGCGCAATTTCGATAGGTCAAGAAACTTTGAGAGGAGGGAAAACATGCAGAATGGAGAATTTCCAAATAATGTTTCAGCGAGTCAACCTACTGGACCGAAATTGAGTCCACCAGCTCCAAGTAGTATACCCCTCCCAACAACTTTAGTCCTACCATGCCTCCTCACAACCATGCTGGAATACCCCAAGGCAACTATCCGGGAGGTTATCCGAACAATTTTAACAGACCACTGCCGCCGCCACCACCGTACAACTTCAACAGCCCACCACCACCTCCTCACAACTTTAACAGACCACCACCTCCACCACCGAACAACTTTAACGGACCACCACCACCATCAAACCCTGGGGGAGCACCGCCAAAGCAACTATTGGGGTGCACCACAGCCAAACTTCAGCAGGCCGCCTGCACAGAACAACTGTGGAGGGATGCAACCTAACGCTGGTGGATGGTCTAATAATGTGCATAACAATCAACAAGAATGGTCGCCAACTGGTCAGGGAAGTCTCAAACTTACGTAA

Protein sequence

MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFERRENMQNGEFPNNVSASQPTGPKLSPPAPSSIPLPTTLVLPCLLTTMLEYPKATIREVIRTILTDHCRRHHRTTSTAHHHLLTTLTDHHLHHRTTLTDHHHHQTLGEHRQSNYWGAPQPNFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT*

Homology

[Close]

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot
Match: Q9LKA5 (Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF8 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 64/104 (61.54%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGR- 112
           ++L  VRWVLPDSYLDV+NKD+ GEPFI+G+A PYDPKYHEEWIRNNA+AN R   N R 
Sbjct: 162 KELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRP 221

Query: 113 RNFDRSRNFE-RRENMQNGEFPNNVSASQPTGPK----LSPPAP 151
           RN DRSRNFE RRENM  G  P       P  P      +PP P
Sbjct: 222 RNNDRSRNFERRRENMAGGPPPQRPPMGGPPPPPHIGGSAPPPP 265

[Close]

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot
Match: Q9CAH0 (Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF7 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDV 109
           LP V+WVLPDS++   +  + GEPF++G+  PYD KYH +W+R+    +++  V
Sbjct: 121 LPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWLRDQTDEDAKSGV 174

[Close]

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot
Match: Q9LPZ1 (Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MORF9 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-07
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRR 107
           LP V WVLPDSY+DVKNKD+ G+ +ING+  P     ++   RNN K  S+R
Sbjct: 155 LPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCTYPTYQPKQRNNTKYQSKR 206

[Close]

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot
Match: Q38732 (DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-06
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDFEGEPFINGQAAP-----YDPK 91
           LP V WVLPDSY+DVKNKD+ G+ ++NG+  P     Y PK
Sbjct: 154 LPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPK 194

[Close]

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot
Match: O82169 (Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MORF6 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRR 112
           E LP V +VLPDSY+D + KD+  E F+NG+  P  P    E  R   +  ++R  +  +
Sbjct: 162 EGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVPRPP----ERQRRMVELTNQRGSDKPK 221

Query: 113 NFDRSRNFERRENMQ 128
             DR RN  RRENM+
Sbjct: 222 YHDRIRNVRRRENMR 232

[Close]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL
Match: A0A0A0KVH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083640 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.3e-146
Identity = 267/283 (94.35%), Postives = 271/283 (95.76%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60

Query: 61  VLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNF 120
           VLPDSYLDVKNKD+ G PFINGQAAPYD KYHEEWIRNNAKANSRRDVNGRRNFDRSRNF
Sbjct: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRDVNGRRNFDRSRNF 120

Query: 121 ERRENMQNGEFPNNVSASQPTGPKLSPPAPSSIPLPTTLVLPCLLTTMLEYPKATIREVI 180
           E+RENMQNGEFPNNVSASQPTGPKLSPPAPSS PLPTTLVL CLLTTMLEYPKATIRE I
Sbjct: 121 EKRENMQNGEFPNNVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180

Query: 181 RTILTDHCRRHHRTTSTAHHHLLTTLTDHHLHHRTTLTDHHHHQTLGEHRQSNYWGAPQP 240
           RTILTDHC RHH TTSTAHHHLLTTLT H  H +TTLTDHHHHQTLGEHRQSNYWGAPQP
Sbjct: 181 RTILTDHCLRHHHTTSTAHHHLLTTLTGH--HRKTTLTDHHHHQTLGEHRQSNYWGAPQP 240

Query: 241 NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 284
           NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT
Sbjct: 241 NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 281

[Close]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL
Match: A0A5D3CWJ8 (Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00080 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-44
Identity = 177/476 (37.18%), Postives = 195/476 (40.97%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 180
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

Query: 181 NKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFE-RRENMQNG 240
           NKD+ GEPFINGQA PYDPKYHEEWIRNNAK   R DVNGRRNFDRSRNFE RRENMQN 
Sbjct: 181 NKDYGGEPFINGQAVPYDPKYHEEWIRNNAKIR-RPDVNGRRNFDRSRNFERRRENMQNR 240

Query: 241 EFPNNVSASQPTGPKLSPPAPSSIPLPTTL---VLPCLLTTMLE--YPKATIREVIRTIL 272
           EFPNNVSASQPTGPKLSPPAPSS+P P      + P     M +  YP        R++ 
Sbjct: 241 EFPNNVSASQPTGPKLSPPAPSSMP-PNNFSPGMPPHNHAGMPQGNYPGGYPNNFNRSLP 300

[Close]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL
Match: A0A1S3BSY7 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492930 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.5e-44
Identity = 177/476 (37.18%), Postives = 195/476 (40.97%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 180
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

Query: 181 NKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFE-RRENMQNG 240
           NKD+ GEPFINGQA PYDPKYHEEWIRNNAK   R DVNGRRNFDRSRNFE RRENMQN 
Sbjct: 181 NKDYGGEPFINGQAVPYDPKYHEEWIRNNAKIR-RPDVNGRRNFDRSRNFERRRENMQNR 240

Query: 241 EFPNNVSASQPTGPKLSPPAPSSIPLPTTL---VLPCLLTTMLE--YPKATIREVIRTIL 272
           EFPNNVSASQPTGPKLSPPAPSS+P P      + P     M +  YP        R++ 
Sbjct: 241 EFPNNVSASQPTGPKLSPPAPSSMP-PNNFSPGMPPHNHAGMPQGNYPGGYPNNFNRSLP 300

[Close]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL
Match: A0A5A7UVC0 (Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00520 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 178/476 (37.39%), Postives = 202/476 (42.44%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 180
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

Query: 181 NKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFE-RRENMQNG 240
           NKD+ GEPFINGQA PYDPKYHEEWIRNNAK   R DVNGRRNFDRSRNFE RRENMQN 
Sbjct: 181 NKDYGGEPFINGQAVPYDPKYHEEWIRNNAKIR-RPDVNGRRNFDRSRNFERRRENMQNR 240

Query: 241 EFPNNVSASQPTGPKLSPPAPSSIPLPTTL---VLPCLLTTMLE--YPKATIREVIRTI- 272
           EFPNNVSASQPTGPKLSPPAPSS+P P      + P     M +  YP        R++ 
Sbjct: 241 EFPNNVSASQPTGPKLSPPAPSSMP-PNNFSPGMPPHNHAGMPQGNYPGGYPNNFNRSLP 300

[Close]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL
Match: A0A5A7UT11 (Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00540 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 121/269 (44.98%), Postives = 131/269 (48.70%), Query Frame = 0


Query: 1   MATQLF-----------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF--- 60
           MATQLF           S FSRSFLT   + +S SSHSSSSLLRRL PLAAIL ADF   
Sbjct: 1   MATQLFSRSLPKTLIWTSTFSRSFLTATGAALSASSHSSSSLLRRLRPLAAILAADFRCH 60

Query: 61  ---PSL------------------------------------------------------ 120
              PS+                                                      
Sbjct: 61  SAAPSVRDFSTRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEI 120

Query: 121 ----------------------------------CCT--------EQLPKVRWVLPDSYL 155
                                             C          ++LPKVRWVLPDSYL
Sbjct: 121 IDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYL 180

[Close]

BLAST of CSPI04G08080 vs. NCBI nr
Match: KGN53590.1 (hypothetical protein Csa_015258 [Cucumis sativus])

HSP 1 Score: 528.1 bits (1359), Expect = 4.7e-146
Identity = 267/283 (94.35%), Postives = 271/283 (95.76%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEQLPKVRW 60

Query: 61  VLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNF 120
           VLPDSYLDVKNKD+ G PFINGQAAPYD KYHEEWIRNNAKANSRRDVNGRRNFDRSRNF
Sbjct: 61  VLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRDVNGRRNFDRSRNF 120

Query: 121 ERRENMQNGEFPNNVSASQPTGPKLSPPAPSSIPLPTTLVLPCLLTTMLEYPKATIREVI 180
           E+RENMQNGEFPNNVSASQPTGPKLSPPAPSS PLPTTLVL CLLTTMLEYPKATIRE I
Sbjct: 121 EKRENMQNGEFPNNVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTTMLEYPKATIREDI 180

Query: 181 RTILTDHCRRHHRTTSTAHHHLLTTLTDHHLHHRTTLTDHHHHQTLGEHRQSNYWGAPQP 240
           RTILTDHC RHH TTSTAHHHLLTTLT H  H +TTLTDHHHHQTLGEHRQSNYWGAPQP
Sbjct: 181 RTILTDHCLRHHHTTSTAHHHLLTTLTGH--HRKTTLTDHHHHQTLGEHRQSNYWGAPQP 240

Query: 241 NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 284
           NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT
Sbjct: 241 NFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 281

[Close]

BLAST of CSPI04G08080 vs. NCBI nr
Match: XP_011654309.2 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 517.7 bits (1332), Expect = 6.4e-143
Identity = 266/296 (89.86%), Postives = 271/296 (91.55%), Query Frame = 0


Query: 1   MATQLFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTE------- 60
           MATQLFSLFSRSFLTPP+SPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTE       
Sbjct: 1   MATQLFSLFSRSFLTPPESPISVSSHSSSSLLRRLPPLAAILTADFPSLCCTEREELLYP 60

Query: 61  ------QLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRD 120
                 +LPKVRWVLPDSYLDVKNKD+ G PFINGQAAPYD KYHEEWIRNNAKANSRRD
Sbjct: 61  CTFSSSELPKVRWVLPDSYLDVKNKDYGGGPFINGQAAPYDSKYHEEWIRNNAKANSRRD 120

Query: 121 VNGRRNFDRSRNFERRENMQNGEFPNNVSASQPTGPKLSPPAPSSIPLPTTLVLPCLLTT 180
           VNGRRNFDRSRNFE+RENMQNGEFPNNVSASQPTGPKLSPPAPSS PLPTTLVL CLLTT
Sbjct: 121 VNGRRNFDRSRNFEKRENMQNGEFPNNVSASQPTGPKLSPPAPSSTPLPTTLVLACLLTT 180

Query: 181 MLEYPKATIREVIRTILTDHCRRHHRTTSTAHHHLLTTLTDHHLHHRTTLTDHHHHQTLG 240
           MLEYPKATIRE IRTILTDHC RHH TTSTAHHHLLTTLT H  H +TTLTDHHHHQTLG
Sbjct: 181 MLEYPKATIREDIRTILTDHCLRHHHTTSTAHHHLLTTLTGH--HRKTTLTDHHHHQTLG 240

Query: 241 EHRQSNYWGAPQPNFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 284
           EHRQSNYWGAPQPNFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT
Sbjct: 241 EHRQSNYWGAPQPNFSRPPAQNNCGGMQPNAGGWSNNVHNNQQEWSPTGQGSLKLT 294

[Close]

BLAST of CSPI04G08080 vs. NCBI nr
Match: XP_008451723.1 (PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Cucumis melo] >TYK16243.1 multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 5.2e-44
Identity = 177/476 (37.18%), Postives = 195/476 (40.97%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 180
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

Query: 181 NKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFE-RRENMQNG 240
           NKD+ GEPFINGQA PYDPKYHEEWIRNNAK   R DVNGRRNFDRSRNFE RRENMQN 
Sbjct: 181 NKDYGGEPFINGQAVPYDPKYHEEWIRNNAKIR-RPDVNGRRNFDRSRNFERRRENMQNR 240

Query: 241 EFPNNVSASQPTGPKLSPPAPSSIPLPTTL---VLPCLLTTMLE--YPKATIREVIRTIL 272
           EFPNNVSASQPTGPKLSPPAPSS+P P      + P     M +  YP        R++ 
Sbjct: 241 EFPNNVSASQPTGPKLSPPAPSSMP-PNNFSPGMPPHNHAGMPQGNYPGGYPNNFNRSLP 300

[Close]

BLAST of CSPI04G08080 vs. NCBI nr
Match: KAA0059030.1 (multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-43
Identity = 178/476 (37.39%), Postives = 202/476 (42.44%), Query Frame = 0


Query: 1   MATQLF--------SLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADF------ 60
           MATQ F        SLFSRSFLT   + ISVSSHSSSSLLRRL PLAAIL ADF      
Sbjct: 1   MATQRFSCSLPKTLSLFSRSFLTATGATISVSSHSSSSLLRRLRPLAAILAADFLCHSAA 60

Query: 61  PSL--------------------------------------------------------- 120
           PS+                                                         
Sbjct: 61  PSVRVFSTRSTSSSIKDPNPNSSSRPPKETILLDGCDFEHWLVVMEKPDDQLTRDEIIDT 120

Query: 121 -------------------------------CCT--------EQLPKVRWVLPDSYLDVK 180
                                          C          ++LPKVRWVLPDSYLDVK
Sbjct: 121 YIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVK 180

Query: 181 NKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGRRNFDRSRNFE-RRENMQNG 240
           NKD+ GEPFINGQA PYDPKYHEEWIRNNAK   R DVNGRRNFDRSRNFE RRENMQN 
Sbjct: 181 NKDYGGEPFINGQAVPYDPKYHEEWIRNNAKIR-RPDVNGRRNFDRSRNFERRRENMQNR 240

Query: 241 EFPNNVSASQPTGPKLSPPAPSSIPLPTTL---VLPCLLTTMLE--YPKATIREVIRTI- 272
           EFPNNVSASQPTGPKLSPPAPSS+P P      + P     M +  YP        R++ 
Sbjct: 241 EFPNNVSASQPTGPKLSPPAPSSMP-PNNFSPGMPPHNHAGMPQGNYPGGYPNNFNRSLP 300

[Close]

BLAST of CSPI04G08080 vs. NCBI nr
Match: XP_038889853.1 (multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 3.3e-38
Identity = 152/409 (37.16%), Postives = 178/409 (43.52%), Query Frame = 0


Query: 5   LFSLFSRSFLTPPQSPISVSSHSSSSLLRRLPPLAAILTADFPSLCCT------------ 64
           L S+FSRSFLT   + IS SSHSS SLLRRL PLAAI+ ADF  L               
Sbjct: 228 LASMFSRSFLTATGAAISASSHSSFSLLRRLRPLAAIVAADFRCLSAAPSVRELATRAAS 287

Query: 65  ------------------------------------------------------------ 124
                                                                       
Sbjct: 288 SSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEENLTRDEIIDSYIKTLAMVVGSE 347

Query: 125 ------------------------------EQLPKVRWVLPDSYLDVKNKDFEGEPFING 184
                                         ++LPKVRWVLPDSYLDVKNKD+ GEPFING
Sbjct: 348 EEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFING 407

Query: 185 QAAPYDPKYHEEWIRNNAKANSRRDVNGR-RNFDRSRNFE-RRENMQNGEFPNNVSASQP 244
           QA PYDPKYHEEWIRNNA+AN R   N R RNFDRSRNFE RR+NMQN EFP N S +QP
Sbjct: 408 QAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRDNMQNREFP-NASTNQP 467

Query: 245 TGPKLSPPAPSSIP---------------LPTTLV---LPCLLTTMLEYPKATIREVIRT 272
           TGP +SPPAPSS+P               +P        P L       P          
Sbjct: 468 TGPNMSPPAPSSMPPKDFSPSMPPHNHAGMPQGNYPGGPPPLNNFNKPPPPHNFNGPPPP 527

[Close]

BLAST of CSPI04G08080 vs. TAIR 10
Match: AT3G15000.1 (cobalt ion binding )

HSP 1 Score: 115.2 bits (287), Expect = 8.9e-26
Identity = 64/104 (61.54%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDVNGR- 112
           ++L  VRWVLPDSYLDV+NKD+ GEPFI+G+A PYDPKYHEEWIRNNA+AN R   N R 
Sbjct: 162 KELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRP 221

Query: 113 RNFDRSRNFE-RRENMQNGEFPNNVSASQPTGPK----LSPPAP 151
           RN DRSRNFE RRENM  G  P       P  P      +PP P
Sbjct: 222 RNNDRSRNFERRRENMAGGPPPQRPPMGGPPPPPHIGGSAPPPP 265

[Close]

BLAST of CSPI04G08080 vs. TAIR 10
Match: AT1G53260.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 8.0e-19
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKA-NSRRDVNGR 112
           ++LPKV+WVLPDSYLD KNKD+ GEPFI+G+A PYDPKYHEEWIRNNA A N  R     
Sbjct: 27  KELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNANATNENRRPRRP 86

Query: 113 RNFDRSRNFERRENMQNGEFPNN--VSASQPTGPKL--SPPAPSSIPLP 157
           RN D  RN    ++      P N  +  + P  P +  +P  P  I  P
Sbjct: 87  RNSDGGRNDRGNQDTGYRRPPPNQGMGGAPPPPPHIGNNPNMPPHIQPP 135

[Close]

BLAST of CSPI04G08080 vs. TAIR 10
Match: AT1G53260.2 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 246 Blast hits to 241 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 16; Plants - 212; Viruses - 1; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 5.4e-15
Identity = 70/178 (39.33%), Postives = 85/178 (47.75%), Query Frame = 0


Query: 53  EQLPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKA-NSRRDVNGR 112
           ++LPKV+WVLPDSYLD KNKD+ GEPFI+G+A PYDPKYHEEWIRNNA A N  R     
Sbjct: 27  KELPKVKWVLPDSYLDGKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNANATNENRRPRRP 86

Query: 113 RNFDRSRNFERRENMQNGEFPNN--VSASQPTGPKL--SPPAPSSIPLPTTLVLPCLLTT 172
           RN D  RN    ++      P N  +  + P  P +  +P  P  I  P         TT
Sbjct: 87  RNSDGGRNDRGNQDTGYRRPPPNQGMGGAPPPPPHIGNNPNMPPHIQPPNMNQNYRGTTT 146

Query: 173 MLEYPKATIREVIRTILTDHCRRHHRTTSTAH----HHLLTTLTDHHLHHRTTLTDHH 222
               P     E+  T    H      T++  H        T  T H    R T T  H
Sbjct: 147 AKHEP-----ELSGTSTAKHEPELSGTSTVEHGPELQGTFTAATKHESELRGTTTTEH 199

[Close]

BLAST of CSPI04G08080 vs. TAIR 10
Match: AT1G72530.1 (plastid developmental protein DAG, putative )

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-09
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 55  LPKVRWVLPDSYLDVKNKDFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDV 109
           LP V+WVLPDS++   +  + GEPF++G+  PYD KYH +W+R+    +++  V
Sbjct: 121 LPDVKWVLPDSFIVDGDNRYGGEPFVDGEVVPYDEKYHADWLRDQTDEDAKSGV 174

[Close]

BLAST of CSPI04G08080 vs. TAIR 10
Match: AT1G72530.2 (plastid developmental protein DAG, putative )

HSP 1 Score: 58.9 bits (141), Expect = 7.5e-09
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 55  LPKVRWVLPDSYL-DVKNK---DFEGEPFINGQAAPYDPKYHEEWIRNNAKANSRRDV 109
           LP V+WVLPDS++ D  N+    F GEPF++G+  PYD KYH +W+R+    +++  V
Sbjct: 121 LPDVKWVLPDSFIVDGDNRYGVFFAGEPFVDGEVVPYDEKYHADWLRDQTDEDAKSGV 178

The following BLAST results are available for this feature:

BLAST of CSPI04G08080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKA5	1.2e-24	61.54	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial OS=Arabido...	[more]
Q9CAH0	2.1e-08	42.59	Multiple organellar RNA editing factor 7, mitochondrial OS=Arabidopsis thaliana ...	[more]
Q9LPZ1	1.8e-07	51.92	Multiple organellar RNA editing factor 9, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q38732	5.8e-06	56.10	DAG protein, chloroplastic OS=Antirrhinum majus OX=4151 GN=DAG PE=2 SV=1	[more]
O82169	3.8e-05	41.33	Multiple organellar RNA editing factor 6, mitochondrial OS=Arabidopsis thaliana ...	[more]

BLAST of CSPI04G08080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVH0	2.3e-146	94.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083640 PE=4 SV=1	[more]
A0A5D3CWJ8	2.5e-44	37.18	Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSY7	2.5e-44	37.18	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like OS=Cu...	[more]
A0A5A7UVC0	1.2e-43	37.39	Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UT11	3.3e-36	44.98	Multiple organellar RNA editing factor 8 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CSPI04G08080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53590.1	4.7e-146	94.35	hypothetical protein Csa_015258 [Cucumis sativus]	[more]
XP_011654309.2	6.4e-143	89.86	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial [Cucumis s...	[more]
XP_008451723.1	5.2e-44	37.18	PREDICTED: multiple organellar RNA editing factor 8, chloroplastic/mitochondrial...	[more]
KAA0059030.1	2.6e-43	37.39	multiple organellar RNA editing factor 8 [Cucumis melo var. makuwa]	[more]
XP_038889853.1	3.3e-38	37.16	multiple organellar RNA editing factor 8, chloroplastic/mitochondrial-like [Beni...	[more]

BLAST of CSPI04G08080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15000.1	8.9e-26	61.54	cobalt ion binding	[more]
AT1G53260.1	8.0e-19	50.46	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cob...	[more]
AT1G53260.2	5.4e-15	39.33	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cob...	[more]
AT1G72530.1	1.5e-09	42.59	plastid developmental protein DAG, putative	[more]
AT1G72530.2	7.5e-09	44.83	plastid developmental protein DAG, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..283
None	No IPR available	PANTHER	PTHR31346:SF24	COBALT ION BINDING PROTEIN-RELATED	coord: 54..262
IPR039206	MORF/ORRM1/DAG-like	PANTHER	PTHR31346	MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED	coord: 54..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G08080.1	CSPI04G08080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016554	cytidine to uridine editing
biological_process	GO:0080156	mitochondrial mRNA modification
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005739	mitochondrion