CSPI04G07720 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G07720
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr4: 5579976 .. 5581676 (+)
RNA-Seq Expression	CSPI04G07720
Synteny	CSPI04G07720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGTAAGAAATGGAGGAGATGGATATGGGGCTGTTTGTCGACGACTAATTTTTCCATCATTGTCCAGGTAGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGGTTTATCCCTTAATAGATCCAAAATGTCCCTAATCAATATTAACCTTAATAGTGGTGACTTGACTCCTTATAGTAACTCTATGGGGTGCTCGGTTGATAGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGTTCTTAATAGTCTTCCTTGTTAGTTTTTCTCCCTTGCTCAAGCTCCGGCCGGTGTTATCAATAGATTGGAAAAGATGATCAGGAATCTTGTTTAGACAGGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGGTTTAGCTAGGAAGAAGCCTCCTTATGGAGACGTTTAATTGTGGTCATTTACAGCTTAGAGGAGAATGGGTGGTCTACTAAAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAACCAAGATCCCTTCCATTGTTGTTCATTTGATTCGTCATATTTGGAAGACTAAAATTCCAAAAAAATGTGAAATTTATCTTATGGTCGCTCGCTTACAGAAGCCTTAACACTCCTGAGAAGCT

mRNA sequence

ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAACCAAGATCCCTTCCATTGTTGTTCATTTGATTCGTCATATTTGGAAGACTAAAATTCCAAAAAAATGTGAAATTTATCTTATGGTCGCTCGCTTACAGAAGCCTTAACACTCCTGAGAAGCT

Coding sequence (CDS)

ATGGCCCGTGTCAGTGATTTCAGACCCATAAGCTTAGTTACCTCCTTGTATAAAGTTATCTCCAAGGTACTTGCAACAAGACTTAAAAAAGTCCTTCCTTCGATAATTAATGATTCTCAGATGGCTTTTGTGGAGGGAAGGCAAATTCTTGATGCTATTTTGATTGCTTCTGAGGTTGTTGACCAATGGTCTTCAAAAGGCAGAAAAGGCGTTCTTTTGAAGCTTGATCTGGAGAAAGCTTATGACAAGGTGGATGGGTCTTTTCTTGATATGGCCATGAAACTTAAAAGGCTTTGGCCTAGAGGAAAGATTCTTGCTAAAAGGGGCATTCGTCAAGGAGATCCTCTTGCCCCTTTTCTTTTTACAATGGTGGGAGATGCTCTAAGCTGCCTTATTCACTACTGTAATGAGAAAAGGAGTTTAAAAGGCTTCCATTTTGAGAAATTGTCAGATGATTTAACCCACCTTCAGTATGTAGATGACACTTCTTTTTTCTTCCTGGGAGGATGGAAACTTGGAGACTTGGTGGAAGGTGATCAATATCTTTCTTCTAGGAGCCGTCTTCCCTTTAAGTACTTGGGCTTTTCTATTGGAGGGGGTCGTAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAAATCGACAGGTGGAGGAATGTGTCCCTCTCTAAAGGGGATAGGCTAACTCTGGTGCAATCAGAGGGTCTACTAATTCAATTGCCCACCTCGTCAAATGGGATTGTAATTCCCCTAATCTGTTATGGTGGTCTTGGGATTGGCTTGTTTAGGCAAAAGAACACTGCTCTTCTCACTAAATGGCTTTGGAGATCCGAACAGGGGAAAATCTTACAGATTATGGGCCGTATTTTGAAGCACAAGGAGACCTTTAAATTTTCAGCTTTCGTGCTGAGAAAAGGAACCAAAATCAGATTTTGGAAGGACAATTGGTGTGGCGTGGAGCCACTTGCAGAAAAATTCCCTAACTTGTTCTCCTTGTCATTGAATAAGGATGCTTATGTGGCTGAATGTTGGTGTATTGTTACTCATTCGTGGAACTTGAGCCTTAGAAGAAATATGCTCAATAACGAGATTGTCAATGTGGCCTCAATTTTAGAAATTCTTCATTCTTGGGCCCCTCAGATGGGGATGATTGCCTTAAATGAACTCCTAATATTGATGGCAGCTTTACTACGAAGTCTACTTTTCTCAAATTAA

Protein sequence

MARVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQWSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLKRLWPRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVDDTSFFFLGGWKLGDLVEGDQYLSSRSRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQSEGLLIQLPTSSNGIVIPLICYGGLGIGLFRQKNTALLTKWLWRSEQGKILQIMGRILKHKETFKFSAFVLRKGTKIRFWKDNWCGVEPLAEKFPNLFSLSLNKDAYVAECWCIVTHSWNLSLRRNMLNNEIVNVASILEILHSWAPQMGMIALNELLILMAALLRSLLFSN*

Homology

[Close]

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-12
Identity = 49/181 (27.07%), Postives = 88/181 (48.62%), Query Frame = 0


Query: 4   VSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW 63
           + ++RP+SL+++ YK+++K ++ RLK VL  +I+  Q   V GR I D + +  +++   
Sbjct: 522 IKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFA 581

Query: 64  SSKGRKGVLLKLDLEKAYDKVDGSFLDMAMK-----------LKRLWPRGKILAK----- 123
              G     L LD EKA+D+VD  +L   ++           LK ++   + L K     
Sbjct: 582 RRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSL 641

Query: 124 -------RGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYVD 162
                  RG+RQG PL+  L+++  +   CL+     ++ L G   ++    +    Y D
Sbjct: 642 TAPLAFGRGVRQGCPLSGQLYSLAIEPFLCLL-----RKRLTGLVLKEPDMRVVLSAYAD 697

[Close]

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-12
Identity = 81/342 (23.68%), Postives = 153/342 (44.74%), Query Frame = 0


Query: 6   DFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQWS- 65
           +FRPISL+    K+++K+LA R+++ +  +I+  Q+ F+ G Q    I  +  V+   + 
Sbjct: 529 NFRPISLMNIDAKILNKILANRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINR 588

Query: 66  SKGRKGVLLKLDLEKAYDKVDGSFL----------DMAMKLKRL---WPRGKIL------ 125
           +K +  V++ +D EKA+DK+   F+           M +K+ R     P   I+      
Sbjct: 589 AKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKL 648

Query: 126 ----AKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEK-------LSDDLT 185
                K G RQG PL+P LF +V   L  L     +++ +KG    K        +DD+ 
Sbjct: 649 EAFPLKTGTRQGCPLSPLLFNIV---LEVLARAIRQEKEIKGIQLGKEEVKLSLFADDM- 708

Query: 186 HLQYVDD------------TSFFFLGGWKLGDLVEGDQYLSSRSR---------LPF--- 245
            + Y+++            ++F  + G+K+ ++ +   +L + +R         LPF   
Sbjct: 709 -IVYLENPIVSAQNLLKLISNFSKVSGYKI-NVQKSQAFLYNNNRQTESQIMGELPFTIA 768

Query: 246 ----KYLGFSIGGGRNR--KEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQSEGLLIQL 287
               KYLG  +        KE +  L +  +   ++W+N+  S   R+ +V+   +L ++
Sbjct: 769 SKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKM-AILPKV 828

[Close]

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-10
Identity = 51/190 (26.84%), Postives = 94/190 (49.47%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++ +FRPISL+    K+++K+LA R+++ + +II+  Q+ F+ G Q    I  +  V+  
Sbjct: 533 KIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHY 592

Query: 63  WSS-KGRKGVLLKLDLEKAYDKVDGSFLDMAMK-----------LKRLWPR--------- 122
            +  K +  +++ LD EKA+DK+   F+   ++           +K ++ +         
Sbjct: 593 INKLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNG 652

Query: 123 ---GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEK-------LSD 162
                I  K G RQG PL+P+LF +V   L  L     +++ +KG    K       L+D
Sbjct: 653 EKLEAIPLKSGTRQGCPLSPYLFNIV---LEVLARAIRQQKEIKGIQIGKEEVKISLLAD 712

[Close]

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-10
Identity = 50/185 (27.03%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R  ++RPISL+    K+++K+L  R+++ +  II+  Q+ F+ G Q    I  +  V+  
Sbjct: 525 RKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQH 584

Query: 63  WSS-KGRKGVLLKLDLEKAYDKVDGSFLDMAMKLKRLWPRGKIL---------------- 122
            +  K +  ++L +D EKA+D +   F  M   LK++   G  L                
Sbjct: 585 INKLKNKDHMILSIDAEKAFDNIQHPF--MIRTLKKIGIEGTFLKLIEAIYSKPTANIIL 644

Query: 123 ---------AKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHL 162
                     + G RQG PL+P LF +V + L+  I    E++++KG H    S+++   
Sbjct: 645 NGVKLKSFPLRSGTRQGCPLSPLLFNIVMEVLAIAI---REEKAIKGIHIG--SEEIKLS 702

[Close]

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot
Match: Q03274 (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Popillia japonica OX=7064 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-07
Identity = 43/154 (27.92%), Postives = 78/154 (50.65%), Query Frame = 0


Query: 5   SDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQWS 64
           S++RPI++ ++L +++ ++LA RL+  +   ++ +Q  +      +D  L+ S ++D + 
Sbjct: 74  SNWRPITIASALQRLLHRILAKRLEAAVE--LHPAQKGYAR----IDGTLVNSLLLDTYI 133

Query: 65  SKGRKG----VLLKLDLEKAYDKVDGSFLDMAMK---------------------LKRLW 124
           S  R+      ++ LD+ KA+D V  S +  A++                       R+ 
Sbjct: 134 SSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVG 193

Query: 125 PRG---KILAKRGIRQGDPLAPFLFTMVGDALSC 131
           P     KI  +RG++QGDPL+PFLF  V D L C
Sbjct: 194 PGSQTRKICIRRGVKQGDPLSPFLFNAVLDELLC 221

[Close]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL
Match: A0A438JQQ0 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_64 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-62
Identity = 168/470 (35.74%), Postives = 233/470 (49.57%), Query Frame = 0


Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            R+SDFRPISL+TSLYK+I+KVLA RL+ VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 541  RISDFRPISLITSLYKIIAKVLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 600

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
                G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 601  KRRTGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFSLRWRKWMRGCLSSVSYAVLVNGN 660

Query: 123  --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
              G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 661  AKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFA 720

Query: 183  DDTSFFF------LGGWKLGDLVEGDQYLSSR-SRLPFKYLGFSIGGGRNRKEMWNTLEE 242
            DDT FF       L   K   L    + L  + S  P  YLG  +GG       W+ + E
Sbjct: 721  DDTIFFSSTREEDLMTLKSNHLSRLAEMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 780

Query: 243  RFRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNG-------------- 302
            R   ++D W+   LS G R+TL+QS           L ++P S                 
Sbjct: 781  RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASMAAKIERMQREFLWSGV 840

Query: 303  ------------IVIPLICYGGLGIGLFRQKNTALLTKWLWR-SEQGK------ILQIMG 362
                        +V      GGLG G    +N ALL KWLWR   +G       IL I G
Sbjct: 841  GEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYG 900

Query: 363  R----------------------ILKHKETFKFSAFVLRKGTKIRFWKDNWCGVEPLAEK 379
                                    L  +E  KF+ FV+  G +IRFW D W G +PL  +
Sbjct: 901  SHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 960

[Close]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL
Match: A0A438K828 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_162 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-61
Identity = 167/480 (34.79%), Postives = 243/480 (50.62%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R+SDFRPISL+TSLYK+I+KVLA R+++VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 4   RISDFRPISLITSLYKIIAKVLAGRIREVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 63

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
               G +GV+ K+D EKAYD V   FLD  M++K      R W R               
Sbjct: 64  KRRSGEEGVVFKIDFEKAYDHVSWDFLDHVMEMKGFGIRWRKWMRGCLSSVSFAVLVNGN 123

Query: 123 --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             G +   RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 124 AKGWVKTSRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFA 183

Query: 183 DDTSFF-------------------FLGGWKLGDLVEGDQY-----LSSRSRL------- 242
           DDT FF                    + G K+ +L + + Y      +  SRL       
Sbjct: 184 DDTIFFSSSREEDMMTLKNVLLVFGHISGLKV-NLDKSNIYGINLEQNHLSRLAEMLDCK 243

Query: 243 ----PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
               P  YLG  +GG       W+ + ER   ++D W+   LS G R+TL+QS       
Sbjct: 244 ASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPC 303

Query: 303 -EGLLIQLPTS----------------------SNGIVIPLIC----YGGLGIGLFRQKN 362
               L ++P S                       + +   ++C     GGLG G    +N
Sbjct: 304 YFLSLFKIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRN 363

Query: 363 TALLTKWLWR-SEQGKIL--QIMGRI--------LKHKETFKFSAFVLRKGTKIRFWKDN 379
            ALL KWLWR   +G  L  Q+ G I        L ++E  KF+ FV+  G +IRFW D 
Sbjct: 364 VALLGKWLWRYPREGSALWHQLDGLIVVLGKAIALVYQEFSKFTRFVVGNGDRIRFWDDL 423

[Close]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL
Match: A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.5e-61
Identity = 168/505 (33.27%), Postives = 239/505 (47.33%), Query Frame = 0


Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            +V DFRPISL+TS+YK+I+K LATRL+ VL   I+++Q AFVEGRQILD++L+A+E V+ 
Sbjct: 858  KVKDFRPISLITSVYKIIAKTLATRLRGVLGETISETQSAFVEGRQILDSVLMANEAVED 917

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
            + S+GRKG +LK+D EKAYD+VD  FLDM ++ K      R W                 
Sbjct: 918  YRSRGRKGFVLKIDFEKAYDRVDWGFLDMVLRKKGFGERWRKWIRGCVSSTSFSIFINGR 977

Query: 123  PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             RGK    RG+RQGDPL+PFLFTM+ D L  ++    E  SL GF   K    L+HLQ+ 
Sbjct: 978  VRGKFNGSRGLRQGDPLSPFLFTMIADVLGRMVDKAIETESLTGFQIGKDDIRLSHLQFA 1037

Query: 183  DDTSFFFLGGWKLGDLVE---------GDQYLSSRSRL---------------------- 242
            DDT FF      L  LV+         G +   ++S+L                      
Sbjct: 1038 DDTLFFVKDEVSLQKLVKVVKAFCGISGLKVNLNKSQLLGICMNEEAVAQSAILIGCEVG 1097

Query: 243  --PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQSEGLLIQLPT 302
              P  YLG S+GG   ++  W  + ++   ++D W+   LS+G RLTL+QS  +L  LP 
Sbjct: 1098 RWPMTYLGMSLGGSPRKRSFWEPVLDKCAKRMDGWKCSFLSRGGRLTLIQS--VLSSLPI 1157

Query: 303  --------------------------------SSNGIVIPLIC----YGGLGIGLFRQKN 362
                                              + +    +C     GGL IG    +N
Sbjct: 1158 YYLSLFKAPKVVLKELEKMMREFFWEGGDLAGGDHLVAWDEVCKPRAEGGLAIGKLDMRN 1217

Query: 363  TALLTKWLWR-------------------------SEQGKILQIMGRILK----HKETFK 379
              LL KWLWR                         ++QG  +   G        + E  K
Sbjct: 1218 KGLLMKWLWRFPLEPNSLWHKVIKSRYGKADNFWDTKQGVRISPRGPWKDISDLYDEYGK 1277

[Close]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL
Match: A0A438G038 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_287 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-60
Identity = 170/498 (34.14%), Postives = 241/498 (48.39%), Query Frame = 0


Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            R+SDFRPISL+TSLYK+I+KVLA RL+ VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 508  RISDFRPISLITSLYKIIAKVLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 567

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
                G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 568  KRRTGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFSLRWRKWMRGCLSSVSYAVLVNGN 627

Query: 123  --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
              G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 628  AKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFA 687

Query: 183  DDTSFF-------------------FLGGWKL--------GDLVEGDQYLS--------S 242
            DDT FF                    + G K+        G  +E   +LS         
Sbjct: 688  DDTIFFSSTREEDLMTLKSVLLVFGHISGLKVNLDKSNIYGINIE-QNHLSRLAVMLDCK 747

Query: 243  RSRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
             S  P  YLG  +GG       W+ + ER   ++D W+   LS G R+TL+QS       
Sbjct: 748  ASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPC 807

Query: 303  -EGLLIQLPTS----------------------SNGIVIPLIC----YGGLGIGLFRQKN 362
                L ++P S                       + +   ++C     GGLG G    +N
Sbjct: 808  YFLSLFRIPASVAAKIERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRN 867

Query: 363  TALLTKWLWR-SEQGK------ILQIMGR----------------------ILKHKETFK 379
             ALL KWLWR   +G       IL I G                        L  +E  K
Sbjct: 868  VALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSK 927

[Close]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL
Match: A0A438E7Q5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_672 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-60
Identity = 165/469 (35.18%), Postives = 235/469 (50.11%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++SDFRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 508 KISDFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 567

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
               G +GV+ K+D EKAYD V   FLD  ++ K      R W                 
Sbjct: 568 RRRSGEEGVVFKIDFEKAYDHVRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 627

Query: 123 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
            +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 628 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFA 687

Query: 183 DDTSFFF------LGGWKLGDLVEGDQYLSSRSRLPFKYLGFSIGGGRNRKEMWNTLEER 242
           DDT FF       L   K   L  G       S  P  YLG  +GG       W+ + ER
Sbjct: 688 DDTIFFSNTREEDLQTLKSLLLAFGHISGLKASGWPILYLGLPLGGNPRAGGFWDPVIER 747

Query: 243 FRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNGIVIPL---------- 302
              ++D W+   LS G R+TL+QS           L +LP S    +  L          
Sbjct: 748 ISRRLDGWQKAYLSFGRRITLIQSCLTHMPCYYLSLFKLPASVAAKIERLQRDFLWSGIG 807

Query: 303 ------------IC----YGGLGIGLFRQKNTALLTKWLWR-SEQGK------ILQIMG- 362
                       +C     GGLG G    +N ALL KWLWR   +G       IL I G 
Sbjct: 808 EGKKDHLVRWDVVCKPKEIGGLGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGS 867

Query: 363 --------RILK-------------HKETFKFSAFVLRKGTKIRFWKDNWCGVEPLAEKF 379
                    I++              +E   F+ FV+  G +IRFW+D W G +PL  ++
Sbjct: 868 HSNGWDANTIVRWSHRCPWKAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQY 927

[Close]

BLAST of CSPI04G07720 vs. NCBI nr
Match: RVX11275.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 250.0 bits (637), Expect = 3.6e-62
Identity = 168/470 (35.74%), Postives = 233/470 (49.57%), Query Frame = 0


Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            R+SDFRPISL+TSLYK+I+KVLA RL+ VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 541  RISDFRPISLITSLYKIIAKVLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 600

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
                G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 601  KRRTGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFSLRWRKWMRGCLSSVSYAVLVNGN 660

Query: 123  --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
              G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 661  AKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFA 720

Query: 183  DDTSFFF------LGGWKLGDLVEGDQYLSSR-SRLPFKYLGFSIGGGRNRKEMWNTLEE 242
            DDT FF       L   K   L    + L  + S  P  YLG  +GG       W+ + E
Sbjct: 721  DDTIFFSSTREEDLMTLKSNHLSRLAEMLDCKASGWPILYLGLPLGGNPKASGFWDPVIE 780

Query: 243  RFRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNG-------------- 302
            R   ++D W+   LS G R+TL+QS           L ++P S                 
Sbjct: 781  RISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASMAAKIERMQREFLWSGV 840

Query: 303  ------------IVIPLICYGGLGIGLFRQKNTALLTKWLWR-SEQGK------ILQIMG 362
                        +V      GGLG G    +N ALL KWLWR   +G       IL I G
Sbjct: 841  GEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILSIYG 900

Query: 363  R----------------------ILKHKETFKFSAFVLRKGTKIRFWKDNWCGVEPLAEK 379
                                    L  +E  KF+ FV+  G +IRFW D W G +PL  +
Sbjct: 901  SHSNGWDVNNNVRWSHRCPWKAIALVFQEFSKFTRFVVGDGDRIRFWDDLWWGDQPLGTQ 960

[Close]

BLAST of CSPI04G07720 vs. NCBI nr
Match: RVX17354.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 245.7 bits (626), Expect = 6.7e-61
Identity = 167/480 (34.79%), Postives = 243/480 (50.62%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R+SDFRPISL+TSLYK+I+KVLA R+++VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 4   RISDFRPISLITSLYKIIAKVLAGRIREVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 63

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
               G +GV+ K+D EKAYD V   FLD  M++K      R W R               
Sbjct: 64  KRRSGEEGVVFKIDFEKAYDHVSWDFLDHVMEMKGFGIRWRKWMRGCLSSVSFAVLVNGN 123

Query: 123 --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
             G +   RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 124 AKGWVKTSRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFA 183

Query: 183 DDTSFF-------------------FLGGWKLGDLVEGDQY-----LSSRSRL------- 242
           DDT FF                    + G K+ +L + + Y      +  SRL       
Sbjct: 184 DDTIFFSSSREEDMMTLKNVLLVFGHISGLKV-NLDKSNIYGINLEQNHLSRLAEMLDCK 243

Query: 243 ----PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
               P  YLG  +GG       W+ + ER   ++D W+   LS G R+TL+QS       
Sbjct: 244 ASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPC 303

Query: 303 -EGLLIQLPTS----------------------SNGIVIPLIC----YGGLGIGLFRQKN 362
               L ++P S                       + +   ++C     GGLG G    +N
Sbjct: 304 YFLSLFKIPASVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRN 363

Query: 363 TALLTKWLWR-SEQGKIL--QIMGRI--------LKHKETFKFSAFVLRKGTKIRFWKDN 379
            ALL KWLWR   +G  L  Q+ G I        L ++E  KF+ FV+  G +IRFW D 
Sbjct: 364 VALLGKWLWRYPREGSALWHQLDGLIVVLGKAIALVYQEFSKFTRFVVGNGDRIRFWDDL 423

[Close]

BLAST of CSPI04G07720 vs. NCBI nr
Match: RVW65579.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 243.0 bits (619), Expect = 4.4e-60
Identity = 170/498 (34.14%), Postives = 241/498 (48.39%), Query Frame = 0


Query: 3    RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
            R+SDFRPISL+TSLYK+I+KVLA RL+ VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 508  RISDFRPISLITSLYKIIAKVLAGRLRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDE 567

Query: 63   WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPR--------------- 122
                G +GV+ K+D EKAYD V   FLD  +++K      R W R               
Sbjct: 568  KRRTGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFSLRWRKWMRGCLSSVSYAVLVNGN 627

Query: 123  --GKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
              G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 628  AKGWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFRVGRNRTRVSHLQFA 687

Query: 183  DDTSFF-------------------FLGGWKL--------GDLVEGDQYLS--------S 242
            DDT FF                    + G K+        G  +E   +LS         
Sbjct: 688  DDTIFFSSTREEDLMTLKSVLLVFGHISGLKVNLDKSNIYGINIE-QNHLSRLAVMLDCK 747

Query: 243  RSRLPFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
             S  P  YLG  +GG       W+ + ER   ++D W+   LS G R+TL+QS       
Sbjct: 748  ASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPC 807

Query: 303  -EGLLIQLPTS----------------------SNGIVIPLIC----YGGLGIGLFRQKN 362
                L ++P S                       + +   ++C     GGLG G    +N
Sbjct: 808  YFLSLFRIPASVAAKIERMQREFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRN 867

Query: 363  TALLTKWLWR-SEQGK------ILQIMGR----------------------ILKHKETFK 379
             ALL KWLWR   +G       IL I G                        L  +E  K
Sbjct: 868  VALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNNVRWSHRCPWKAIALVFQEFSK 927

[Close]

BLAST of CSPI04G07720 vs. NCBI nr
Match: RVW43689.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 242.3 bits (617), Expect = 7.4e-60
Identity = 165/469 (35.18%), Postives = 235/469 (50.11%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           ++SDFRPISL+TSLYK+I+KVL+ RL+ VL   I+ +Q AFV+GRQI+DA+LIA+E+VD+
Sbjct: 508 KISDFRPISLITSLYKIIAKVLSGRLRGVLHETIHSTQGAFVQGRQIMDAVLIANEIVDE 567

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLW----------------- 122
               G +GV+ K+D EKAYD V   FLD  ++ K      R W                 
Sbjct: 568 RRRSGEEGVVFKIDFEKAYDHVRWDFLDQVLEKKGFSPKWRKWMNGCLSSVSYAVLVNGS 627

Query: 123 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
            +G + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+ 
Sbjct: 628 AKGWVKASRGLRQGDPLSPFLFTLVADVLSRMLVRAEERNMLEGFRVGRNRTRVSHLQFA 687

Query: 183 DDTSFFF------LGGWKLGDLVEGDQYLSSRSRLPFKYLGFSIGGGRNRKEMWNTLEER 242
           DDT FF       L   K   L  G       S  P  YLG  +GG       W+ + ER
Sbjct: 688 DDTIFFSNTREEDLQTLKSLLLAFGHISGLKASGWPILYLGLPLGGNPRAGGFWDPVIER 747

Query: 243 FRYKIDRWRNVSLSKGDRLTLVQS--------EGLLIQLPTSSNGIVIPL---------- 302
              ++D W+   LS G R+TL+QS           L +LP S    +  L          
Sbjct: 748 ISRRLDGWQKAYLSFGRRITLIQSCLTHMPCYYLSLFKLPASVAAKIERLQRDFLWSGIG 807

Query: 303 ------------IC----YGGLGIGLFRQKNTALLTKWLWR-SEQGK------ILQIMG- 362
                       +C     GGLG G    +N ALL KWLWR   +G       IL I G 
Sbjct: 808 EGKKDHLVRWDVVCKPKEIGGLGFGNISLRNLALLGKWLWRYPREGSALWHQVILSIYGS 867

Query: 363 --------RILK-------------HKETFKFSAFVLRKGTKIRFWKDNWCGVEPLAEKF 379
                    I++              +E   F+ FV+  G +IRFW+D W G +PL  ++
Sbjct: 868 HSNGWDANTIVRWSHRCPWKAISQVFQEFSSFTRFVVGNGERIRFWEDLWWGDQPLGSQY 927

[Close]

BLAST of CSPI04G07720 vs. NCBI nr
Match: RVW56424.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 241.5 bits (615), Expect = 1.3e-59
Identity = 167/495 (33.74%), Postives = 241/495 (48.69%), Query Frame = 0


Query: 3   RVSDFRPISLVTSLYKVISKVLATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQ 62
           R+SDFRPISL+TSLYK+I+KVLA R++ VL   I+ +Q AFV+GRQILDA+LIA+E+VD+
Sbjct: 4   RISDFRPISLITSLYKIIAKVLARRIRGVLHKTIHSTQGAFVQGRQILDAVLIANEIVDE 63

Query: 63  WSSKGRKGVLLKLDLEKAYDKVDGSFLDMAMKLK------RLWPRG-------------- 122
               G +GV+ K+D EKAYD V   FLD  +++K      R W  G              
Sbjct: 64  KRRSGEEGVVFKIDFEKAYDHVSWDFLDHVLEMKGFGSRWRKWMSGCLSSVSFAVLVNGN 123

Query: 123 ---KILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 182
               + A RG+RQGDPL+PFLFT+V D LS ++    E+  L+GF   +    ++HLQ+V
Sbjct: 124 AKRWVKASRGLRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFKVGRNRTRVSHLQFV 183

Query: 183 DDTSFF-------------------FLGGWKL--------GDLVEGDQYLSSRSRL---- 242
           DDT FF                    + G K+        G  +E   +LS  + +    
Sbjct: 184 DDTIFFSSSLEEDMMTLKNVLLVFGHISGLKVNLDKSNIYGINIE-QNHLSRLAEMLDCK 243

Query: 243 ----PFKYLGFSIGGGRNRKEMWNTLEERFRYKIDRWRNVSLSKGDRLTLVQS------- 302
               P  YLG  +GG       W+ + ER   ++D W+   LS G R+TL+QS       
Sbjct: 244 ASGWPILYLGLPLGGNPKTSGFWDPVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPC 303

Query: 303 -EGLLIQLPTS----------------------SNGIVIPLIC----YGGLGIGLFRQKN 362
               L ++PTS                       + +   ++C     GGLG G    +N
Sbjct: 304 YFLSLFKIPTSVAAKIERMQRDFLWSGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISIRN 363

Query: 363 TALLTKWLWR-SEQGK------ILQIMGR----------------------ILKHKETFK 376
            ALL KWLWR   +G       IL I G                        L ++E  K
Sbjct: 364 VALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDVNNIVRWSHRCPWKAIALVYQEFSK 423

[Close]

BLAST of CSPI04G07720 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 100 PRGKILAKRGIRQGDPLAPFLFTMVGDALSCLIHYCNEKRSLKGFHFEKLSDDLTHLQYV 159
           P+G +   RG+RQGDPL+P+LF +  + LS L     E+  L G      S  + HL + 
Sbjct: 18  PQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINHLLFA 77

Query: 160 DDTS 164
           DDTS
Sbjct: 78  DDTS 81

[Close]

BLAST of CSPI04G07720 vs. TAIR 10
Match: AT4G20520.1 (RNA binding;RNA-directed DNA polymerases )

HSP 1 Score: 49.7 bits (117), Expect = 6.6e-06
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 24 LATRLKKVLPSIINDSQMAFVEGRQILDAILIASEVVDQW-SSKGRKG-VLLKLDLEKAY 83
          +  RLK ++ ++I  +Q +F+ GR   D I+   E V      KG KG +LLKLDLEKAY
Sbjct: 1  MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60

Query: 84 DKVDGSFLD 91
          D++   +L+
Sbjct: 61 DRIRWDYLE 69

The following BLAST results are available for this feature:

BLAST of CSPI04G07720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	3.5e-12	27.07	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
O00370	6.0e-12	23.68	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]
P11369	1.5e-10	26.84	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
P08548	3.3e-10	27.03	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
Q03274	4.4e-07	27.92	Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fra...	[more]

BLAST of CSPI04G07720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438JQQ0	1.7e-62	35.74	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438K828	3.3e-61	34.79	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A803QEA6	9.5e-61	33.27	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438G038	2.1e-60	34.14	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438E7Q5	3.6e-60	35.18	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of CSPI04G07720 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX11275.1	3.6e-62	35.74	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVX17354.1	6.7e-61	34.79	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW65579.1	4.4e-60	34.14	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW43689.1	7.4e-60	35.18	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW56424.1	1.3e-59	33.74	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of CSPI04G07720 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	1.1e-08	40.63	RNA-directed DNA polymerase (reverse transcriptase)	[more]
AT4G20520.1	6.6e-06	40.58	RNA binding;RNA-directed DNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 5..166 e-value: 3.3E-24 score: 85.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..226 score: 11.314998
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 3..354
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 3..354
None	No IPR available	CDD	cd01650	RT_nLTR_like	coord: 3..166 e-value: 3.65816E-37 score: 132.8
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 7..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G07720.1	CSPI04G07720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity