CSPI04G07690 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G07690
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionglycine-rich protein 5-like
LocationChr4: 5562686 .. 5563175 (+)
RNA-Seq ExpressionCSPI04G07690
SyntenyCSPI04G07690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGGTATTCACCATTTGATATAAAAGGCAAAGAACAAGTTCTGAAGAGAGTACTTAATTGTAATTTAGTTTGAGTGTTATTAAGATCGTGATAATTTTGGAAGGAGAGACATGAAAACTTATGCCATCGTTCTTATAGCCGGGGGGTCTGTGATAGGGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTCGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATGCCCAAACGCACTCCACAAAGGAACCTTGACATTGAACGTGGCCAATTACCTAAGAACAATAATAACGGTGGGATGACTATTCTCGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCACTTTAAGCAGCAGTGGTGGTGGAGGTGGAGGTGATTCTGGTAGTGGTGGTGATGGCGATGGCGGTGGAGGTGGCGGCTGCGGAGGTGGCTGTGGCGGCTGCGGAGGTGGATGTGGAGGTGGCTGTGGATGA

mRNA sequence

ATTTGGTATTCACCATTTGATATAAAAGGCAAAGAACAAGTTCTGAAGAGAGTACTTAATTGTAATTTAGTTTGAGTGTTATTAAGATCGTGATAATTTTGGAAGGAGAGACATGAAAACTTATGCCATCGTTCTTATAGCCGGGGGGTCTGTGATAGGGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTCGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATGCCCAAACGCACTCCACAAAGGAACCTTGACATTGAACGTGGCCAATTACCTAAGAACAATAATAACGGTGGGATGACTATTCTCGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCACTTTAAGCAGCAGTGGTGGTGGAGGTGGAGGTGATTCTGGTAGTGGTGGTGATGGCGATGGCGGTGGAGGTGGCGGCTGCGGAGGTGGCTGTGGCGGCTGCGGAGGTGGATGTGGAGGTGGCTGTGGATGA

Coding sequence (CDS)

ATGAAAACTTATGCCATCGTTCTTATAGCCGGGGGGTCTGTGATAGGGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTCGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATGCCCAAACGCACTCCACAAAGGAACCTTGACATTGAACGTGGCCAATTACCTAAGAACAATAATAACGGTGGGATGACTATTCTCGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCACTTTAAGCAGCAGTGGTGGTGGAGGTGGAGGTGATTCTGGTAGTGGTGGTGATGGCGATGGCGGTGGAGGTGGCGGCTGCGGAGGTGGCTGTGGCGGCTGCGGAGGTGGATGTGGAGGTGGCTGTGGATGA

Protein sequence

MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGCGGGCG*
Homology
BLAST of CSPI04G07690 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.1e-51
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60
           MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120
           NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120

Query: 121 GGGCG 126
           GGGCG
Sbjct: 121 GGGCG 125

BLAST of CSPI04G07690 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 82/131 (62.60%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG-GGGGCGGGC-G 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGG    G DG GG GGGGCGGGC G
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 126
           GCGGGCGGGCG
Sbjct: 121 GCGGGCGGGCG 127

BLAST of CSPI04G07690 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-17
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSS-SGGGGGGDSGSGGDGDGG-GGGGCGGGC- 120
                NGGMTIL GAAAGLATAAVVT+L++  GGGGGG    GGDG GG GGGGCGGGC 
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 126
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

BLAST of CSPI04G07690 vs. ExPASy TrEMBL
Match: A0A1S3YHZ0 (zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTP-----QRNLDIERGQ 60
           MK YAI LI  GSV   V+IL C+CK GR +K +  T N+    P     Q N D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKN---NNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGD-GGGGGGCG 120
           + PK+     +GGM ILG  AA +ATAAV+T+ + SGGGGGG SGSGG G  G GGGGCG
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVITS-AYSGGGGGGTSGSGGGGGCGSGGGGCG 120

Query: 121 GGCGGCGGGCGGGCG 126
           GG GGCGGG  GGCG
Sbjct: 121 GG-GGCGGGGCGGCG 133

BLAST of CSPI04G07690 vs. ExPASy TrEMBL
Match: A0A1U7W9C4 (zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 73/132 (55.30%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTP-----QRNLDIERGQ 60
           MK YAI LI  GSV   V+IL C+CK GR +K +  T N+    P     Q N D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKN---NNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGD-GGGGGGCG 120
           + PK+     +GGM ILG  AA +ATAAV+T+ + SGGGGGG SGSGG G  G GGGGCG
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVITS-AYSGGGGGGTSGSGGGGGCGSGGGGCG 120

Query: 121 GGCGGCGGGCGG 123
           GG GGC GGCGG
Sbjct: 121 GG-GGC-GGCGG 129

BLAST of CSPI04G07690 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60
           MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120
           NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGCGGCGGGC 120

Query: 121 GGGCG 126
           GGGCG
Sbjct: 121 GGGCG 125

BLAST of CSPI04G07690 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.0 bits (258), Expect = 9.7e-19
Identity = 83/131 (63.36%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG-GGGGCGGGC-G 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGG    GGDG GG GGGGCGGGC G
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 126
           GCGGGCGGGCG
Sbjct: 121 GCGGGCGGGCG 127

BLAST of CSPI04G07690 vs. NCBI nr
Match: XP_022985127.1 (glycine-rich protein 5-like [Cucurbita maxima])

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-18
Identity = 82/131 (62.60%), Postives = 95/131 (72.52%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGG-GGGGCGGGC-G 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGG    G DG GG GGGGCGGGC G
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 126
           GCGGGCGGGCG
Sbjct: 121 GCGGGCGGGCG 127

BLAST of CSPI04G07690 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-17
Identity = 79/130 (60.77%), Postives = 93/130 (71.54%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSSSGGGGGGDSGSGGDGDGGGGGGCGGGC-GG 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGG  G    G  GGGGGCGGGC GG
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGG 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 126

BLAST of CSPI04G07690 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 4.1e-17
Identity = 82/132 (62.12%), Postives = 96/132 (72.73%), Query Frame = 0

Query: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKK----TITYNMPKRTPQRNLDIERGQL 60
           M+TYAIVLI  G VI + +ILWCVC +G  +KKK    T T +  + TP+ + D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTTLSS-SGGGGGGDSGSGGDGDGG-GGGGCGGGC- 120
                NGGMTIL GAAAGLATAAVVT+L++  GGGGGG    GGDG GG GGGGCGGGC 
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 126
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVE16.1e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1[more]
A0A6J1J4091.4e-1862.60glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=... [more]
A0A6J1EY842.0e-1762.12glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S... [more]
A0A1S3YHZ01.2e-0955.56zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4... [more]
A0A1U7W9C42.6e-0955.30zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 P... [more]
Match NameE-valueIdentityDescription
KGN53550.11.3e-50100.00hypothetical protein Csa_015259 [Cucumis sativus][more]
XP_023552868.19.7e-1963.36glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo][more]
XP_022985127.12.8e-1862.60glycine-rich protein 5-like [Cucurbita maxima][more]
KAG6577050.13.1e-1760.77hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022931328.14.1e-1762.12glycine-rich protein 5-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G07690.1CSPI04G07690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane