CSPI04G07610 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G07610
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 5478412 .. 5479952 (-)
RNA-Seq ExpressionCSPI04G07610
SyntenyCSPI04G07610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATTTGAGGGGGAAAGAGATGCGCGTGAAGGGGAGGGAGAAAGAAGGGCGGTCGGGTTAGATGACTCACCTCCACTTTCGGCTTTATACGATCATGATGATGTTGATGATACATGATAGATGTAATAGATTATATATGTATCTATGTATGTACTATGTATGTATGATGGGATGGTGAATCAATATACAGATTATTCTTTTCTTGCTTCCTCACTCCACCGCCCCCCACCCCTTCTTTGCTTCGTTCAATCCTCAATCCTCAATCCTCATCCAATTCTCTCCAATTTTTCCATCAATATTAATATTTTCCCTCTTATTTTGAACATCATATCTTAAATAAATCAAACCTTTTTTTTTCTTTTCTTTTCTTTTTTGTACTTAATTTTATCCAATTCCTCCCATTTTTTGCTTCTCTTTCTTGTTAGAATTTGCAAAAGCGAAAGCTTATTAAGAGGGAAGAATACCCATTTGGTCTTTCTCCTTCTTCTTCTCTTTCTCTTTCTCTCTCTCTCTCGCGCGCTCTCAGAGAAGAACCTTCTGATCGTGTTCCTCTTCTTGGTAGCAAACCAAATCTTTCTGTCTCATTCTCTCTATCTCTACTCCGCATTTTGTCTTCTTTACTCTCCTTCTCCAATTCCCAGGTGGGTTCCATTCCAATTCCCTCTTCTTCATCTTCTTCTTCTTTCTTGTCTTTTATTCTTCTTTTTCTCTGCCTCAACAACCACTCAATACCTCTTCATTTCTTCTTTTCTTACTTCCGTCTCCTTTCTTTTCGAATTCTGTTCTTGTTTCTGCACTTGGGTCTATCTTCTTTTGTTGCTATTCTGCAACTACTTGTTTCTTTTTTTATAATTTGTATGGAAGTCTGTGTGTACTGAACTGCCTCGGTTTCTTTTTCTTGCATATCTTTCTCTTTTGATCGGAATTGGTTCTGCCTCTAAAAATTGTGGTGGGTTTTAACTCACAATGCTTCTGCCCGAAGGATTTAGGGTTCGTCCCACATTTTTTTATTTCGATCTTCGACCTTCGTGGCATTGCTTATTATTGAATTCCTTTCTCTCAATGGTTTTGTGCAGTATGTTCCTTTTGTTTCTTTCTTTCTGGTGATTGTTGTTGGATATTACTTGTAGGGAAGAAAAATTAGGGTTCTGAACATTGTGAATTTGCTTGGATTTTTGTTCTTTTTCTTTATTATGTGCTGAAGCTTATTTTCTTTCTCTTTCTTAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGTACAGAGCTCTGACCATAATTCTCCAACCTTATAACCTTAGGGATAAATTTGGATAATTGGATTACAAGTTTTTCATTCTTCTTCTTCAATAATAATAATAAGTAAGAATCTGGCTCTCAGATTTTGTTTTTGTTTTGCTTTCACGTTATGCAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

mRNA sequence

ATGGGTGATTTGAGGGGGAAAGAGATGCGCGTGAAGGGGAGGGAGAAAGAAGGGCGGTCGGCAAACCAAATCTTTCTGTCTCATTCTCTCTATCTCTACTCCGCATTTTGTCTTCTTTACTCTCCTTCTCCAATTCCCAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

Coding sequence (CDS)

ATGGGTGATTTGAGGGGGAAAGAGATGCGCGTGAAGGGGAGGGAGAAAGAAGGGCGGTCGGCAAACCAAATCTTTCTGTCTCATTCTCTCTATCTCTACTCCGCATTTTGTCTTCTTTACTCTCCTTCTCCAATTCCCAGGGCTGGATTTTTTTCGGTTGAGCTTTCAAGCCTGGAAAATGTCTATGGTTCTTCAACTGATTGTACTATGCTAAAACAGGATTGTGAAGATTTCAATTTGCCACGGATATCACGTATTGACACAAAAAAGTATCTGATGGCCAGTGTAATGTAG

Protein sequence

MGDLRGKEMRVKGREKEGRSANQIFLSHSLYLYSAFCLLYSPSPIPRAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM*
Homology
[Close]
BLAST of CSPI04G07610 vs. ExPASy TrEMBL
Match: A0A0A0KVH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075240 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1   MGDLRGKEMRVKGREKEGRSANQIFLSHSLYLYSAFCLLYSPSPIPRAGFFSVELSSLEN 60
           MGDLRGKEMRVKGREKEGRSANQIFLSHSLYLYSAFCLLYSPSPIPRAGFFSVELSSLEN
Sbjct: 61  MGDLRGKEMRVKGREKEGRSANQIFLSHSLYLYSAFCLLYSPSPIPRAGFFSVELSSLEN 120

Query: 61  VYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 98
           VYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM
Sbjct: 121 VYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 157

[Close]
BLAST of CSPI04G07610 vs. NCBI nr
Match: KAE8649242.1 (hypothetical protein Csa_014844 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.5e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 47 RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 98
          RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM
Sbjct: 16 RAGFFSVELSSLENVYGSSTDCTMLKQDCEDFNLPRISRIDTKKYLMASVM 66

The following BLAST results are available for this feature:
BLAST of CSPI04G07610 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G07610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVH82.4e-47100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075240 PE=4 SV=1[more]
BLAST of CSPI04G07610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649242.11.5e-19100.00hypothetical protein Csa_014844 [Cucumis sativus][more]
BLAST of CSPI04G07610 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G07610.1CSPI04G07610.1mRNA