CSPI04G07500 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G07500
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 5333637 .. 5333849 (+)
RNA-Seq Expression	CSPI04G07500
Synteny	CSPI04G07500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTTCTGAGTGTTTGCATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCATTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGATTTATTTAG

mRNA sequence

ATGAATCTTCTGAGTGTTTGCATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCATTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGATTTATTTAG

Coding sequence (CDS)

ATGAATCTTCTGAGTGTTTGCATGATAAGTTTGTTGACACAACTTGGTAAGTATACCTCCAGTTCTCGTATGTCTTCTGGTTTTGAAGCTGGTCACTGTGCTGATTATCCTGGTAGTTCTCAGTTTGTTTCGCCTCATTTGAATTCTAGTTCATCTCAGTCTTCTCTTAAGGATGGTTCTAGAGTTCCTGTTACAGAAATGAGATTTATTTAG

Protein sequence

MNLLSVCMISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPHLNSSSSQSSLKDGSRVPVTEMRFI*

Homology

[Close]

BLAST of CSPI04G07500 vs. ExPASy TrEMBL
Match: A0A0A0KVC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064620 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 8  MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPHLNSSSSQSSLKDGSRVPVTEM 67
          MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSP LNSSSSQSSLKDGSRVPVTEM
Sbjct: 1  MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60

[Close]

BLAST of CSPI04G07500 vs. NCBI nr
Match: KGN53530.1 (hypothetical protein Csa_014465 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 8  MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPHLNSSSSQSSLKDGSRVPVTEM 67
          MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSP LNSSSSQSSLKDGSRVPVTEM
Sbjct: 1  MISLLTQLGKYTSSSRMSSGFEAGHCADYPGSSQFVSPRLNSSSSQSSLKDGSRVPVTEM 60

The following BLAST results are available for this feature:

BLAST of CSPI04G07500 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G07500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVC9	1.2e-22	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G064620 PE=4 SV=1	[more]

BLAST of CSPI04G07500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53530.1	2.4e-22	98.33	hypothetical protein Csa_014465 [Cucumis sativus]	[more]

BLAST of CSPI04G07500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G07500.1	CSPI04G07500.1	mRNA