CSPI04G07020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G07020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	UBA domain-containing protein
Location	Chr4: 4938123 .. 4938514 (-)
RNA-Seq Expression	CSPI04G07020
Synteny	CSPI04G07020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAGTGAGAGATGAGGAATAAAGGTTTGATAGTAGAAATATTCATTTCCTCTTTTTTCATTTTTCTGTTCCAATAGAGAGAGAGAGAGAGAGATCACCGGTTTCATCATCGCCAGCTTCCAACAACAACAACAAGAAGAGGAAGAAGAACGATTTGATTTCGATTTCAATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCTTGAGAGAGTTACCCAATCTTTTCTGTAGAATAAATTAG

mRNA sequence

GGGCAGTGAGAGATGAGGAATAAAGGTTTGATAGTAGAAATATTCATTTCCTCTTTTTTCATTTTTCTGTTCCAATAGAGAGAGAGAGAGAGAGATCACCGGTTTCATCATCGCCAGCTTCCAACAACAACAACAAGAAGAGGAAGAAGAACGATTTGATTTCGATTTCAATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCTTGAGAGAGTTACCCAATCTTTTCTGTAGAATAAATTAG

Coding sequence (CDS)

ATGGGGGAAGAAATGGAGCAACTTGTAAACATGGGTTTTCCCGACGAACTGGCCGCTCAAGCCTTAGCAGCCACCGGCGGAAAGTCCACTCTCAAAGCCACTGAATGGATTCTCAATCATAAATCCTCTTCTCCTTCCCCCAAGCCTAATCTCCCCATTTCTTCTAATCCTAATCTCCAGCCCTTGAGAGAGTTACCCAATCTTTTCTGTAGAATAAATTAG

Protein sequence

MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQPLRELPNLFCRIN*

Homology

[Close]

BLAST of CSPI04G07020 vs. ExPASy TrEMBL
Match: A0A0A0KV66 (UBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G056690 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ
Sbjct: 25 MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 84

Query: 61 P 62
          P
Sbjct: 85 P 85

[Close]

BLAST of CSPI04G07020 vs. ExPASy TrEMBL
Match: A0A5A7TPE1 (ATPase WRNIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003140 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNL ISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLTISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. ExPASy TrEMBL
Match: A0A1S3BTB9 (ATPase WRNIP1 OS=Cucumis melo OX=3656 GN=LOC103493041 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNL ISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLTISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. ExPASy TrEMBL
Match: A0A6J1IY27 (ATPase WRNIP1 OS=Cucurbita maxima OX=3661 GN=LOC111479500 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 58/68 (85.29%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSS-------SPSPKPNLPI 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWIL HKSS       SPSPKPNLPI
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILTHKSSSCSSPSPSPSPKPNLPI 60

Query: 61 SSNPNLQP 62
           SNPN+QP
Sbjct: 61 -SNPNVQP 67

[Close]

BLAST of CSPI04G07020 vs. ExPASy TrEMBL
Match: A0A6J1FWJ6 (ATPase WRNIP1 OS=Cucurbita moschata OX=3662 GN=LOC111448010 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 58/68 (85.29%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSS-------SPSPKPNLPI 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWIL HKSS       SPSPKPNLPI
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILTHKSSSCSSPSPSPSPKPNLPI 60

Query: 61 SSNPNLQP 62
           SNPN+QP
Sbjct: 61 -SNPNVQP 67

[Close]

BLAST of CSPI04G07020 vs. NCBI nr
Match: XP_031740693.1 (LOW QUALITY PROTEIN: ATPase WRNIP1 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 9.1e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. NCBI nr
Match: KAE8649228.1 (hypothetical protein Csa_015346 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 9.1e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. NCBI nr
Match: KAA0045004.1 (ATPase WRNIP1 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNL ISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLTISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. NCBI nr
Match: XP_008451883.1 (PREDICTED: ATPase WRNIP1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLPISSNPNLQ 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNL ISSNPNLQ
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPSPKPNLTISSNPNLQ 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI04G07020 vs. NCBI nr
Match: XP_038877049.1 (ATPase WRNIP1 [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-23
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSS----SPSPKPNLPISSN 60
          MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSS    SPSPKPNLPISSN
Sbjct: 1  MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSSSTSPSPKPNLPISSN 60

Query: 61 PNLQP 62
          PNLQP
Sbjct: 61 PNLQP 65

[Close]

BLAST of CSPI04G07020 vs. TAIR 10
Match: AT1G24290.1 (AAA-type ATPase family protein )

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-09
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 5  MEQLVNMGFPDELAAQALAATGGKSTLKATEWILNHKSSSPS 47
          MEQLV+MGF  +LAA+AL ATGG S  KAT+WIL+H+SS  S
Sbjct: 1  MEQLVSMGFSSDLAAEALTATGGDSIQKATDWILSHRSSPQS 42

The following BLAST results are available for this feature:

BLAST of CSPI04G07020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G07020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV66	4.4e-25	100.00	UBA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G056690 PE=4 SV...	[more]
A0A5A7TPE1	3.7e-24	98.36	ATPase WRNIP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003140 ...	[more]
A0A1S3BTB9	3.7e-24	98.36	ATPase WRNIP1 OS=Cucumis melo OX=3656 GN=LOC103493041 PE=3 SV=1	[more]
A0A6J1IY27	4.3e-20	85.29	ATPase WRNIP1 OS=Cucurbita maxima OX=3661 GN=LOC111479500 PE=3 SV=1	[more]
A0A6J1FWJ6	4.3e-20	85.29	ATPase WRNIP1 OS=Cucurbita moschata OX=3662 GN=LOC111448010 PE=3 SV=1	[more]

BLAST of CSPI04G07020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740693.1	9.1e-25	100.00	LOW QUALITY PROTEIN: ATPase WRNIP1 [Cucumis sativus]	[more]
KAE8649228.1	9.1e-25	100.00	hypothetical protein Csa_015346 [Cucumis sativus]	[more]
KAA0045004.1	7.7e-24	98.36	ATPase WRNIP1 [Cucumis melo var. makuwa]	[more]
XP_008451883.1	7.7e-24	98.36	PREDICTED: ATPase WRNIP1 [Cucumis melo]	[more]
XP_038877049.1	5.0e-23	93.85	ATPase WRNIP1 [Benincasa hispida]	[more]

BLAST of CSPI04G07020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24290.1	4.4e-09	66.67	AAA-type ATPase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 2..56 e-value: 1.8E-11 score: 45.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..73
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 5..37 e-value: 2.6E-6 score: 27.2
IPR015940	Ubiquitin-associated domain	PROSITE	PS50030	UBA	coord: 1..40 score: 11.510718
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 4..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G07020.1	CSPI04G07020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006282	regulation of DNA repair
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0017116	single-stranded DNA helicase activity