CSPI04G06670 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G06670
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 4687214 .. 4687426 (+)
RNA-Seq Expression	CSPI04G06670
Synteny	CSPI04G06670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTTTCGGATTCCAAGTAGACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

mRNA sequence

ATGGGGATTTTCGGATTCCAAGTAGACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

Coding sequence (CDS)

ATGGGGATTTTCGGATTCCAAGTAGACAAATGGTTGAAGGGGAAAATCGGCGGTGGTGGTTATAGAAATCCTGATTTGAATCGGACAGAACTCAAAGGAAACATGACAGAGAAGAGCAGTAGTCGACCGGATTGTTCAAACCCTAGAAGGAAGGAAGAAAAGCCTGAAATGAAAATAATGTGCAAAGGGAGATTGATGCGAGGGAAGGAATGA

Protein sequence

MGIFGFQVDKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGRLMRGKE*

Homology

[Close]

BLAST of CSPI04G06670 vs. ExPASy TrEMBL
Match: A0A0A0KX61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 5  GFQVDKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR 64
          G +  KWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR
Sbjct: 29 GLKDYKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR 88

Query: 65 LMRGKE 71
          LMRGKE
Sbjct: 89 LMRGKE 94

[Close]

BLAST of CSPI04G06670 vs. NCBI nr
Match: KGN53439.1 (hypothetical protein Csa_014595 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 5  GFQVDKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR 64
          G +  KWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR
Sbjct: 29 GLKDYKWLKGKIGGGGYRNPDLNRTELKGNMTEKSSSRPDCSNPRRKEEKPEMKIMCKGR 88

Query: 65 LMRGKE 71
          LMRGKE
Sbjct: 89 LMRGKE 94

The following BLAST results are available for this feature:

BLAST of CSPI04G06670 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G06670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX61	1.3e-26	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055340 PE=4 SV=1	[more]

BLAST of CSPI04G06670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53439.1	2.7e-26	93.94	hypothetical protein Csa_014595 [Cucumis sativus]	[more]

BLAST of CSPI04G06670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06670.1	CSPI04G06670.1	mRNA