CSPI04G06650 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G06650
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 4670852 .. 4672175 (-)
RNA-Seq Expression	CSPI04G06650
Synteny	CSPI04G06650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGTATACTGTAGATTAGATATTCGAGTTCATTTATTAATTTTTCTATCATTTTGTTTTTTTGTTTGAAAACAAGTGTACATCACTTCATAAGAATTAGGGTTTTGTAAAAAAATTGTTGTCCTAACTTTAATTTATATCTTTTTCAATTGAGATCATCTCACAAATTACTTTAGGGTTTTTAGATCTCTCTATCCGGGTCAGTGTTCAAAATGGAAACTAGGGTTCCATAATTTTGCAATTTATTTTTTCTCCCTTTTTTTGTAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGGTGAGAAAAACCCTAATCTGGATTCTTTTTCAAACATTCCAAGTGGAGATCAAACTATCAACATTTAAATTTGAACTTGATTCTATTATATATACTCAACAATTAAACTTCAAAATTTGAAACGTAATTGTCGTTTGAGGTGCATGTTCAACTTGTTTATGTTTTGGAAAATTCTTAAGCTTCTATTAACAACTTAGCTAGTTTTCGAGTTCAAATGTTCGCCCATATTTGTACTTAATTTAAAAAGTTCTTTACAAGATAACTAAGCTTAGGGTTTGAACGATCTAGAGAAGCACTTGGGTTTGGGTTTAGAAAATTGTGGATAAATTAAAAACTCTTTTCTTAAAAGAAAATTGAGAAGCAAATAAAATTTATTTTGATTTTAATTTATCAACGTTCGTGGATTTGCCTAACAAATTAACCCTAGATGAGCAACCATGAGTTCGGCTTTAAAACCTAACCTTTTCACTCCAAACACATTCTTAAAGCTATTGATTTGCATTTGAAATAAACCGTTGACGTTTTTCTTTGAAAAAGATGCATTGGATCAGCAGGTGTACCCGAACATCTCCACTAGGTGGACACCCCTTAGAATCTTCATCATTCCCACTCTCATTAATATAGAAAGAACTAGTACAACAAGAGACAATACAAATATAAAAATATTAATATCGATCCACATCAAGATAACTCGAATTTAGCAATAAATCAAGAAACATATCATGCATCCATTTATATCAATGCATGAATGAACAAATTAAACCAGGTATAAAATCATTTATAATTGACCATACTCTTGAAATTACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

mRNA sequence

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Coding sequence (CDS)

ATGGCTGCCTTTATCAAGACCTTCATTTTCATCTTCCTCATCACCTTCATGTTCCCTAATTCAGGGGACGCTCATGACCTGAGCTTGAAGAAGGGTTTGAAGCTTTCAAACCCTTGTGGACAGTTGATAGTTGAAAAGAACAACAAAGTGACAAGAAAGCTTTTGGGAGCAGAAGCATTTGCAGACTATGCAAGCCCAGATCATAACACAAGACATGAGCCAAGGTTTGGAAACCCCGGAGGTAGAGCTTAA

Protein sequence

MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAFADYASPDHNTRHEPRFGNPGGRA*

Homology

[Close]

BLAST of CSPI04G06650 vs. ExPASy TrEMBL
Match: A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI FMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. ExPASy TrEMBL
Match: A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI F FP+SGDA DLSLKKGLKLSNPCGQ+IVEKNN+VTRKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFTFPDSGDAGDLSLKKGLKLSNPCGQMIVEKNNRVTRKLLGAEVL 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
           DYASPDHN+RHEPRFG+PGGRA
Sbjct: 61 LDYASPDHNSRHEPRFGSPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. ExPASy TrEMBL
Match: A0A5A7TNM7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003170 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 27 LSLKKGL--KLSNPCGQLIVEKNNKVTRKLLGAE--AFADYASPDHNTRHEPRFGNPGGR 83
          +SLK+GL  + +NPCGQ+ + +  KV RK+LG E     DY  P  N  HEPR G PGGR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: KGN53437.1 (hypothetical protein Csa_015314 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 9.6e-39
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI FMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          ADYASPDHNTRHEPRFGNPGGRA
Sbjct: 61 ADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: TYK16509.1 (hypothetical protein E5676_scaffold21G003180 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAFIKTFIFIFLI F FP+SGDA DLSLKKGLKLSNPCGQ+IVEKNN+VTRKLLGAE  
Sbjct: 1  MAAFIKTFIFIFLIIFTFPDSGDAGDLSLKKGLKLSNPCGQMIVEKNNRVTRKLLGAEVL 60

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
           DYASPDHN+RHEPRFG+PGGRA
Sbjct: 61 LDYASPDHNSRHEPRFGSPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: KAG6577123.1 (hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 8.2e-22
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAF  TF FIFL+ F +PNSG A  L+LK+GLKL NPCGQ+ VEK NKV RKLLGAE F
Sbjct: 4  MAAF-NTFFFIFLL-FTYPNSGVADGLNLKEGLKLPNPCGQVRVEK-NKVARKLLGAEEF 63

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
          +DYASP+HN RHEPR G+PGGRA
Sbjct: 64 SDYASPEHNRRHEPRIGSPGGRA 83

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: KAG6600409.1 (hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 8.2e-22
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  MAAFIKTFIFIFLITFMFPNSGDAHDLSLKKGLKLSNPCGQLIVEKNNKVTRKLLGAEAF 60
          MAAF KTFIFIFL+ F+ PNSGDA  L LK+GLKL NPCGQ+I+EK  K  RKLLGAE  
Sbjct: 4  MAAF-KTFIFIFLV-FICPNSGDADGLRLKEGLKLPNPCGQVIIEK--KGVRKLLGAEEL 63

Query: 61 ADYASPDHNTRHEPRFGNPGGRA 84
           DYASP HN RHEPR GNPGGRA
Sbjct: 64 LDYASPSHNPRHEPRVGNPGGRA 82

[Close]

BLAST of CSPI04G06650 vs. NCBI nr
Match: KAA0044962.1 (hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK16508.1 hypothetical protein E5676_scaffold21G003170 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 7.0e-05
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 27 LSLKKGL--KLSNPCGQLIVEKNNKVTRKLLGAE--AFADYASPDHNTRHEPRFGNPGGR 83
          +SLK+GL  + +NPCGQ+ + +  KV RK+LG E     DY  P  N  HEPR G PGGR
Sbjct: 1  MSLKEGLNEEHNNPCGQMRIGRKGKVMRKILGNEEGILMDYNEPSANPSHEPRRGTPGGR 60

The following BLAST results are available for this feature:

BLAST of CSPI04G06650 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G06650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7	4.7e-39	98.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1	[more]
A0A5D3D203	2.9e-33	86.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TNM7	3.4e-05	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI04G06650 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53437.1	9.6e-39	98.80	hypothetical protein Csa_015314 [Cucumis sativus]	[more]
TYK16509.1	6.0e-33	86.75	hypothetical protein E5676_scaffold21G003180 [Cucumis melo var. makuwa]	[more]
KAG6577123.1	8.2e-22	72.29	hypothetical protein SDJN03_24697, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6600409.1	8.2e-22	73.49	hypothetical protein SDJN03_05642, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0044962.1	7.0e-05	50.00	hypothetical protein E6C27_scaffold74G002680 [Cucumis melo var. makuwa] >TYK1650...	[more]

BLAST of CSPI04G06650 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06650.1	CSPI04G06650.1	mRNA