CSPI04G05880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G05880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transcription initiation factor IIE subunit beta
Location	Chr4: 3981611 .. 3984577 (-)
RNA-Seq Expression	CSPI04G05880
Synteny	CSPI04G05880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGAAAATGTAGGGGTCAAAGTATAAACATTCTAAAACTGAGGTACCAAAATGGAAGTTGAGTTCTTTCCAAGAACCTAACCCCATTTCTGATTTTAACCTTCCTCAAACGCACTCGTTCCTCAGCTTTCTCCCTCGCGCTTTTCCAATTCATTCTTCTCGATCTCCATACCTCCACAAACCCAACTCCATACAACAATCACCTCCATTACGTACTCTACAGATCATTCGACATCGACCACCCATCTCACCGTCGTCTTATTCACGGCGGTTGATTTCGGTCTATCTAACCGATGCAATTTCTGGTATTTTACTACATACCCTTTTCTTTTCTGGGTATTTTCAATTGTGTGTTGGGCTTGATGGGACGCCTGGCAATTTTATTTTATTAGTTGAATCTATTTTGATGATCTTTGTCGTTATTTTGATTGTTAGGGTTGAGAATTATTGAAACTCTAAGGGGATTTAATGGCGTTGCAAGAACAATTAGATAGGTTTAAGAAACAGCAAGAACGATGTCAGAGTACCTTGTCTGGCATTGCTGCATCCAAGTCTGTATCCAAGTCTACACCCAAGTTTACGCCTGCACCTGCTGCTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGACACTGAGAGACTTCAACATATTAATAGCATAAGGAAGTCTCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGGTTCATATCCATCACTCCATCTTTCTTATATTTCCCCGTTTGTTTTTCTCCTTCTATCTAATCTGCTGTACTTGGTTTCTTGTGTTTGACCGGATTCTTCAATGTAAGGCTTTGTATTGGATAGGATTTAATGGACCGTGTATTGATTTGAGCCGTGTAGACCTTATGCTGCTGAAATTTTGCATTTTATTCTGTCCAAGTTCCATAAGTTGAATGTGTGTTTTTTAATGGATACCGTTTTAACTGGGGGATTTTGCTGGAATGAGGACTTCTTCAGGTAGTGAGGCTTGTGATTGGCATTAGATGGCAAGAGGAGCCAGGACCCTCTTGAGTGGCTTTTGGGTGGTTGTTTTGCCTACTTGTGTTGGTGCAAGATTGTATTTTTACATCCGAATTACATATGTTAATCTAATCCCTTTCCTGTAATCTTCTCTGGATTTTCAATTGGCTGTAAAAAAGCTAAAAAGAAGGCCTACTGAAATGCATTTTCTACTTACTGTTAGTGAATTGGAACCTTAGGGATATGTTACAAGCTTACCGCTTGCTTATTGTTCATGTTAACAGACAAGGCAAGCGTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGGTAATTTATATTCTCAAACACCTTCATTATTTACATCCTTGTACTTATTTGGTTTAAAATTTTGAACCTTAAGGTTGACATTTTTCCACTCCTTTTTTTCCCTTCCGTTTTTGGTGTTTTCAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGGTACGAAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGTATGTATATATATATATATATATATATTTAATGTTGTTTTCCCATTTTGAATGCAAAAACGTGAAAAATAACAAATGACTCTTGAATGATGCTATCATTAATATAACTTATTCAGCAAAATAACCTTTGTAAAGTTTAATGTATTGGCTTTTTGGACATCAAATGTCTATATGGCTTGCTCACTATTTATGTCGATGTTCAGGGTTCTTGTTCATGCTATGCCTCAATAAGTCTATTCTATTTTCTTCCTGGTTAGACTTTGGTTTCTGTTATAGACTAGAAGGTTTTGTTCATCCAACAATTCCTATCCCAAAATAGCAGCTGAAATTTGAATTGAAGGATTTAACTCATGATTTATAGTCTTGTCAAAACAAATACAAATTGTTTTTCTAATTCAGAGGAGGAAACAAAAAGAAAATTCAACAACAGGAGCCAATCTGAGACTAATGAGACGTAATGTCTCAATCTAAAACTTTAAGGTCTGACAAGTATTTACAATTCTTTGAAAAGAATATACTCAAGGAAGTATTGAACTTGGGGTTGTTGCATCCAAATTGTAGTTGATCACCGGCCCTCAAAATTATTACAACTTCTTTGCTTATATAGTGAATGGAAAATACACGGCTTTACTCTTTGTTTATGAATGGAAAACAGAGTCCGTTAACTTTAGTTTTTAGCTTACATTTTATTTTCCTCTCTTGTTTGTTTAGGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTCGATTCACAAGAAGATATTGCCTACCCAAATGACCCACGAATTCAAATCAAGGTAGACGATGATCTGAAGCAGCTCTTTCGGGAGATCGAATTACCTCGTGACATGCTTGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCAACCAACACGGCGAAGAGGCGAGCCAACGCACAACATGTAGCATCCTCAAAACCCAAGCCGAAGAAAAAGAAGCAAGAAATCAGCAAGAGGACTAAGCTCACTAACGCACATCTTCCCGAGCTCTTCAAAAACTAGAGAACCGTATAGACTGGCCTGCAACAATATAGTTTGTATGGATAATTCATGGACTCTGTAGATAGGATTCAATCATGCCTTCTGTTTGGTGTATTGCTATTTGTTTTCCATGATCTCATCATAGATTGAAATGCTCCTGTGATTTACTCTTCTTTGTTTACATCAATTAATTGAACAATTTGAAATGTAAGATATAAGTTCAACTAAACTAGATATATGGTATTAGAAGTTTTAGCATATATACCAACTTTTGAATTCTATTGTTT

mRNA sequence

ATTTGAAAATGTAGGGGTCAAAGTATAAACATTCTAAAACTGAGGTACCAAAATGGAAGTTGAGTTCTTTCCAAGAACCTAACCCCATTTCTGATTTTAACCTTCCTCAAACGCACTCGTTCCTCAGCTTTCTCCCTCGCGCTTTTCCAATTCATTCTTCTCGATCTCCATACCTCCACAAACCCAACTCCATACAACAATCACCTCCATTACGTACTCTACAGATCATTCGACATCGACCACCCATCTCACCGTCGTCTTATTCACGGCGGTTGATTTCGGTCTATCTAACCGATGCAATTTCTGGGTTGAGAATTATTGAAACTCTAAGGGGATTTAATGGCGTTGCAAGAACAATTAGATAGGTTTAAGAAACAGCAAGAACGATGTCAGAGTACCTTGTCTGGCATTGCTGCATCCAAGTCTGTATCCAAGTCTACACCCAAGTTTACGCCTGCACCTGCTGCTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGACACTGAGAGACTTCAACATATTAATAGCATAAGGAAGTCTCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCGTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGGTACGAAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTCGATTCACAAGAAGATATTGCCTACCCAAATGACCCACGAATTCAAATCAAGGTAGACGATGATCTGAAGCAGCTCTTTCGGGAGATCGAATTACCTCGTGACATGCTTGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCAACCAACACGGCGAAGAGGCGAGCCAACGCACAACATGTAGCATCCTCAAAACCCAAGCCGAAGAAAAAGAAGCAAGAAATCAGCAAGAGGACTAAGCTCACTAACGCACATCTTCCCGAGCTCTTCAAAAACTAGAGAACCGTATAGACTGGCCTGCAACAATATAGTTTGTATGGATAATTCATGGACTCTGTAGATAGGATTCAATCATGCCTTCTGTTTGGTGTATTGCTATTTGTTTTCCATGATCTCATCATAGATTGAAATGCTCCTGTGATTTACTCTTCTTTGTTTACATCAATTAATTGAACAATTTGAAATGTAAGATATAAGTTCAACTAAACTAGATATATGGTATTAGAAGTTTTAGCATATATACCAACTTTTGAATTCTATTGTTT

Coding sequence (CDS)

ATGGCGTTGCAAGAACAATTAGATAGGTTTAAGAAACAGCAAGAACGATGTCAGAGTACCTTGTCTGGCATTGCTGCATCCAAGTCTGTATCCAAGTCTACACCCAAGTTTACGCCTGCACCTGCTGCTTCCATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGACACTGAGAGACTTCAACATATTAATAGCATAAGGAAGTCTCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCGTTTACACCTGAGCAAATCAATGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTATGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGGTACGAAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGCCAGGTTTGGCTTCTCTCAAACTTCGATTCACAAGAAGATATTGCCTACCCAAATGACCCACGAATTCAAATCAAGGTAGACGATGATCTGAAGCAGCTCTTTCGGGAGATCGAATTACCTCGTGACATGCTTGATGTCGAAAAGGATCTGCAGAAGAATGGAATGAAGCCTGCAACCAACACGGCGAAGAGGCGAGCCAACGCACAACATGTAGCATCCTCAAAACCCAAGCCGAAGAAAAAGAAGCAAGAAATCAGCAAGAGGACTAAGCTCACTAACGCACATCTTCCCGAGCTCTTCAAAAACTAG

Protein sequence

MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN*

Homology

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BLAST of CSPI04G05880 vs. ExPASy Swiss-Prot
Match: Q54KJ8 (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 71/271 (26.20%), Postives = 138/271 (50.92%), Query Frame = 0


Query: 10  FKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIR 69
           FK+ Q +   TL+ I    S + S  K+ P  +       A   + S  T        ++
Sbjct: 6   FKETQMKAIETLNSIKKPSSSTNSAFKYIPKISGGGGSSSANR-QSSIYTANTLRDKQVK 65

Query: 70  KSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGR-R 129
           + P    +  +++ L  LE   A T E ++   ++ I+    + + LRNN K+   G  R
Sbjct: 66  EKPSNRIVYDIVNYLKTLEGIPADTKEIMHSTNHM-IDDKPEILELLRNNEKIIDHGNDR 125

Query: 130 FSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQ 189
           FS+K K +++ +  +L L+  +P GI V +L ++Y +   D++ LK + Q++ +   +S 
Sbjct: 126 FSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESA 185

Query: 190 EDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHV 249
            DI +PND R+++ +  +L  +++ I+LP +  D+EK+++  G+    +  +   +A+  
Sbjct: 186 CDIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAGL----SVVESVESARQT 245

Query: 250 ASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
            S+K K ++KK    + TK+TN H+     N
Sbjct: 246 KSTKLKKERKK----RITKVTNTHIENFNPN 265

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BLAST of CSPI04G05880 vs. ExPASy Swiss-Prot
Match: P79011 (Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfa2 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-12
Identity = 63/205 (30.73%), Postives = 110/205 (53.66%), Query Frame = 0


Query: 75  AQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKVHYDGRR--FSYKSK 134
           +Q+   ++ L E  +  T E+I  A Y+       + + L+ N +++YD R   F++K  
Sbjct: 81  SQLHYAVEYLKERNEPKTAEEI--ASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPL 140

Query: 135 HDLKDKNQLL-YL-VRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL-SNFDSQEDI 194
           H+++    LL YL  +K   G+++ +L+D +P+V  +L+ L+  G+V LL +  D    +
Sbjct: 141 HNIRSGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 200

Query: 195 AYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHV 254
            + ND      VD + +Q++ EI +P   LD+  +L K G+KP +   +T KR  + Q  
Sbjct: 201 VWRNDKSCDCHVDKEFQQVWHEIPIP-PTLDLASELGKYGLKPTSVDPSTVKRAGHNQ-- 260

Query: 255 ASSKPKPKKKKQEISKRTKLTNAHL 272
               PK KK K   ++R K+TN HL
Sbjct: 261 ---TPKQKKPK---TRRGKITNTHL 274

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BLAST of CSPI04G05880 vs. ExPASy TrEMBL
Match: A0A0A0KWU5 (Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=Csa_4G049080 PE=3 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.4e-148
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of CSPI04G05880 vs. ExPASy TrEMBL
Match: A0A1S3BS95 (Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC103493148 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.5e-147
Identity = 275/277 (99.28%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of CSPI04G05880 vs. ExPASy TrEMBL
Match: A0A5A7TNR4 (Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004520 PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 4.5e-147
Identity = 275/277 (99.28%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of CSPI04G05880 vs. ExPASy TrEMBL
Match: A0A6J1J372 (Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111482983 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.5e-139
Identity = 261/277 (94.22%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of CSPI04G05880 vs. ExPASy TrEMBL
Match: A0A6J1ETU7 (Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111437664 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.0e-138
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of CSPI04G05880 vs. NCBI nr
Match: XP_011653191.1 (general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothetical protein Csa_014626 [Cucumis sativus])

HSP 1 Score: 534.6 bits (1376), Expect = 4.9e-148
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of CSPI04G05880 vs. NCBI nr
Match: XP_008452012.1 (PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_008452013.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >KAA0044840.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa] >TYK16624.1 general transcription factor IIE subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 530.4 bits (1365), Expect = 9.3e-147
Identity = 275/277 (99.28%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPLAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 277

[Close]

BLAST of CSPI04G05880 vs. NCBI nr
Match: XP_038906431.1 (general transcription factor IIE subunit 2-like [Benincasa hispida])

HSP 1 Score: 516.9 bits (1330), Expect = 1.1e-142
Identity = 269/277 (97.11%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQEQLDRFKKQQERCQ+TLSGIAA+KS SKSTPKFTPAPAAS  RPPAPAVKFSNDTE
Sbjct: 1   MALQEQLDRFKKQQERCQTTLSGIAAAKSASKSTPKFTPAPAAS--RPPAPAVKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQHVASSKPKLKKKKQEISKRTKLTNAHLPELFKN 275

[Close]

BLAST of CSPI04G05880 vs. NCBI nr
Match: XP_022984812.1 (general transcription factor IIE subunit 2-like [Cucurbita maxima])

HSP 1 Score: 503.8 bits (1296), Expect = 9.3e-139
Identity = 261/277 (94.22%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of CSPI04G05880 vs. NCBI nr
Match: XP_022931511.1 (general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_023552207.1 general transcription factor IIE subunit 2-like [Cucurbita pepo subsp. pepo] >KAG7015180.1 General transcription factor IIE subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502.7 bits (1293), Expect = 2.1e-138
Identity = 260/277 (93.86%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTE
Sbjct: 1   MALQEKLDRFKRQQERCQTTLSGIAASKTTT-TTPRFTPAPAAS--RPPAPAIKFSNDTE 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+CYVDINSNKAV+DSLRNNPKV
Sbjct: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINESCYVDINSNKAVFDSLRNNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLL 180
           HYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLL
Sbjct: 121 HYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPSVMEDLQALKASGQVWLL 180

Query: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240
           SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR
Sbjct: 181 SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRR 240

Query: 241 ANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 278
           ANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Sbjct: 241 ANAQNVASSKPKPKKKKQEISKRTKLTNAHLPELFKN 274

[Close]

BLAST of CSPI04G05880 vs. TAIR 10
Match: AT4G20330.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 360.9 bits (925), Expect = 9.1e-100
Identity = 197/280 (70.36%), Postives = 235/280 (83.93%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAA-SIARPPAPAVKFSNDT 60
           MAL+EQLD+F KQQ +CQSTLS IA+S+  + S+ +  P PAA +  +P A  VKFS+DT
Sbjct: 1   MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDT 60

Query: 61  ERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPK 120
           ERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE C+VD+++NKAV+DSLR NPK
Sbjct: 61  ERLQNINNIRKAPVGAQIKRVIDLLYERRLALTPEQINEWCHVDMHANKAVFDSLRKNPK 120

Query: 121 VHYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWL 180
            HYDGRRFSYK+ HD+ DKNQLL LVRK+ +GIAV+DLKDAYP+VMEDL+AL ASG ++L
Sbjct: 121 AHYDGRRFSYKATHDVNDKNQLLSLVRKYLDGIAVVDLKDAYPNVMEDLKALSASGDIYL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN  SQEDIAYPND + +IKVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+R
Sbjct: 181 LSN--SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLKIGLKPATNTAER 240

Query: 241 RANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 278
           RA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Sbjct: 241 RAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQN 278

[Close]

BLAST of CSPI04G05880 vs. TAIR 10
Match: AT4G21010.1 (Transcription initiation factor TFIIE, beta subunit )

HSP 1 Score: 293.1 bits (749), Expect = 2.3e-79
Identity = 168/280 (60.00%), Postives = 217/280 (77.50%), Query Frame = 0


Query: 1   MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTE 60
           MAL+EQLD+F KQQE+CQSTLS I++S++    +  + PA A +  +P     KFS +T+
Sbjct: 1   MALREQLDKFNKQQEKCQSTLSSISSSRTALSRS--YVPA-ATTSQKPNVFRGKFSENTK 60

Query: 61  RLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVYDSLRNNPKV 120
           +LQHI +IR S VGAQ+K VIDLL +TR A+T EQINEACYVD+++NKAV+DSLR NPKV
Sbjct: 61  QLQHITNIRNSAVGAQMKIVIDLLFKTRLAYTAEQINEACYVDMHNNKAVFDSLRKNPKV 120

Query: 121 HYDGRRFSYKSKHDLKDKNQLLYLVRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WL 180
           HYDGRRFSYK+ H++KDK QLL  V K  + I V DLKDAYP+VMEDL++LK+SG++ WL
Sbjct: 121 HYDGRRFSYKATHNIKDKKQLLSFVNKSDKVIDVSDLKDAYPNVMEDLKSLKSSGEIFWL 180

Query: 181 LSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKR 240
           LSN DS+E   Y N+     K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+R
Sbjct: 181 LSNTDSKEGTVYRNNMEYP-KIDDELKALFRDI-IPSDMLEVEKELLKIGLKPATNIAER 240

Query: 241 RANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN 278
           RA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Sbjct: 241 RAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275

The following BLAST results are available for this feature:

BLAST of CSPI04G05880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54KJ8	1.5e-14	26.20	General transcription factor IIE subunit 2 OS=Dictyostelium discoideum OX=44689 ...	[more]
P79011	2.4e-12	30.73	Transcription initiation factor IIE subunit beta OS=Schizosaccharomyces pombe (s...	[more]

BLAST of CSPI04G05880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWU5	2.4e-148	100.00	Transcription initiation factor IIE subunit beta OS=Cucumis sativus OX=3659 GN=C...	[more]
A0A1S3BS95	4.5e-147	99.28	Transcription initiation factor IIE subunit beta OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TNR4	4.5e-147	99.28	Transcription initiation factor IIE subunit beta OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1J372	4.5e-139	94.22	Transcription initiation factor IIE subunit beta OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ETU7	1.0e-138	93.86	Transcription initiation factor IIE subunit beta OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of CSPI04G05880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653191.1	4.9e-148	100.00	general transcription factor IIE subunit 2 [Cucumis sativus] >KGN53349.1 hypothe...	[more]
XP_008452012.1	9.3e-147	99.28	PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo] >XP_00...	[more]
XP_038906431.1	1.1e-142	97.11	general transcription factor IIE subunit 2-like [Benincasa hispida]	[more]
XP_022984812.1	9.3e-139	94.22	general transcription factor IIE subunit 2-like [Cucurbita maxima]	[more]
XP_022931511.1	2.1e-138	93.86	general transcription factor IIE subunit 2-like [Cucurbita moschata] >XP_0235522...	[more]

BLAST of CSPI04G05880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20330.1	9.1e-100	70.36	Transcription initiation factor TFIIE, beta subunit	[more]
AT4G21010.1	2.3e-79	60.00	Transcription initiation factor TFIIE, beta subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040501	TFA2, Winged helix domain 2	PFAM	PF18121	TFA2_Winged_2	coord: 136..193 e-value: 4.6E-14 score: 51.8
IPR016656	Transcription initiation factor TFIIE, beta subunit	PIRSF	PIRSF016398	TFIIE-beta	coord: 1..277 e-value: 8.8E-25 score: 85.4
IPR016656	Transcription initiation factor TFIIE, beta subunit	PANTHER	PTHR12716	TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT	coord: 1..277
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PFAM	PF02186	TFIIE_beta	coord: 75..134 e-value: 2.4E-9 score: 37.4
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain	PROSITE	PS51351	TFIIE_BETA_C	coord: 61..136 score: 10.965059
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	PANTHER	PTHR12716:SF13	BNAA02G21830D PROTEIN	coord: 1..277

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G05880.1	CSPI04G05880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005673	transcription factor TFIIE complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity