CSPI04G04570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G04570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DUF740 domain-containing protein
Location	Chr4: 2978375 .. 2978976 (-)
RNA-Seq Expression	CSPI04G04570
Synteny	CSPI04G04570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGGACGACACTCTGTCTCTTGTTTTTATATCCCAATTCACATTTAAACAGAGACAAAAAGTAACAAAAAACCAAAAGAAGAAAAAAAAGAAAAACAGAGAGGAAAACACAATCAATCAATTTGTTTGAAGAAGCATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGATTTATCATTGTATGAGATTTTATTTAGTAAATGAATTAGAATTTTTCTTTTTTGTTCTTTAATCATT

mRNA sequence

CACGGACGACACTCTGTCTCTTGTTTTTATATCCCAATTCACATTTAAACAGAGACAAAAAGTAACAAAAAACCAAAAGAAGAAAAAAAAGAAAAACAGAGAGGAAAACACAATCAATCAATTTGTTTGAAGAAGCATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGATTTATCATTGTATGAGATTTTATTTAGTAAATGAATTAGAATTTTTCTTTTTTGTTCTTTAATCATT

Coding sequence (CDS)

ATGGGGAAATCGGAATCGGCCAAAGAATGTAAGAGACACCCAAATCACAATCTCTTACCCGGAATTTGCCCTTCTTGTCTTCGAGAAAAGCTTCAACAATTTCATCAATCTCCCAACTATTCCGATTCTCAATCAACTTTCTCTTCCCCTTCTTCTTCTTCCTCCGATTTTTTCTTCTCCGCCGATTCCTCTCGCCGCCACCGCCGCCACCACCGTCGTAACGCCTCCGAGTTCGTCACTGGGTCGATGGCGGTTGACTTGTTAGCGGACAAGCTGAAGAAGACCGGTTCCATTAGGATCTCTACCGATGGCGGCACCGGCGCTGGCGTTAAAGGAAAGAAGAAACTTGGGTTTTGGTCAAGGTTGTTGCTCCGCCCAAAAGCTCTGTATTTTAGTTGA

Protein sequence

MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWSRLLLRPKALYFS*

Homology

[Close]

BLAST of CSPI04G04570 vs. ExPASy TrEMBL
Match: A0A0A0KZB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120
           ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS
Sbjct: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120

Query: 121 RLLLRPKALYFS 133
           RLLLRPKALYFS
Sbjct: 121 RLLLRPKALYFS 132

[Close]

BLAST of CSPI04G04570 vs. ExPASy TrEMBL
Match: A0A5A7TS78 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004740 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.9e-64
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DGGTGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGGTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]

BLAST of CSPI04G04570 vs. ExPASy TrEMBL
Match: A0A5D3CZT1 (DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00010 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DG TGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]

BLAST of CSPI04G04570 vs. ExPASy TrEMBL
Match: A0A1S3BWL8 (uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.9e-63
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DG TGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]

BLAST of CSPI04G04570 vs. ExPASy TrEMBL
Match: A0A6J1JAI6 (uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 94/133 (70.68%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSP--NYSDSQSTFSSPSSSSSDFF 60
           MGKSESAKECKRH NHN LPGICPSCLRE+LQQ  QS   NYSDS+ST SS    SS+ F
Sbjct: 56  MGKSESAKECKRHQNHNQLPGICPSCLRERLQQLQQSSSINYSDSRSTSSSSFLKSSESF 115

Query: 61  FSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGF 120
           FS ++S   RR H RNASE VTGSMA DL  DK+KK+ SIRIS DGG G G  GKKK+GF
Sbjct: 116 FSGNTS--WRRRHTRNASELVTGSMAADLFGDKVKKSSSIRISADGGGGGGGGGKKKVGF 175

Query: 121 WSRLLLRPKALYF 132
           WSR L+RPKALYF
Sbjct: 176 WSRFLVRPKALYF 186

[Close]

BLAST of CSPI04G04570 vs. NCBI nr
Match: XP_031745668.1 (uncharacterized protein LOC116406103 [Cucumis sativus] >XP_031745670.1 uncharacterized protein LOC116406105 [Cucumis sativus] >KAE8637171.1 hypothetical protein CSA_018802 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 5.9e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120
           ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS
Sbjct: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFWS 120

Query: 121 RLLLRPKALYFS 133
           RLLLRPKALYFS
Sbjct: 121 RLLLRPKALYFS 132

[Close]

BLAST of CSPI04G04570 vs. NCBI nr
Match: KAA0044717.1 (DUF740 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 8.0e-64
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DGGTGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGGTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]

BLAST of CSPI04G04570 vs. NCBI nr
Match: XP_008453802.1 (PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo] >TYK16870.1 DUF740 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.0e-63
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPN+NLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNYNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRR-HHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGFW 120
           ADSSRRHRR HHRRNASEFVTGSMAVDLLADKLKK+GSIRIS DG TGAGVKGKKKLGFW
Sbjct: 61  ADSSRRHRRHHHRRNASEFVTGSMAVDLLADKLKKSGSIRISADGSTGAGVKGKKKLGFW 120

Query: 121 SRLLLRPKALYFS 133
           SRLLLRPKALYFS
Sbjct: 121 SRLLLRPKALYFS 133

[Close]

BLAST of CSPI04G04570 vs. NCBI nr
Match: XP_011653117.2 (uncharacterized protein LOC105435176 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQSTFSSPSSSSSDFFFS 60

Query: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKKLGF 119
           ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKK LGF
Sbjct: 61  ADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGKKNLGF 118

[Close]

BLAST of CSPI04G04570 vs. NCBI nr
Match: XP_038900289.1 (uncharacterized protein LOC120087549 [Benincasa hispida])

HSP 1 Score: 195.7 bits (496), Expect = 2.6e-46
Identity = 106/126 (84.13%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPNYSDSQST-FSSPSSSSSDFFF 60
           MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSP  SDS ST FSS SS SSDFFF
Sbjct: 1   MGKSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPVCSDSHSTFFSSSSSPSSDFFF 60

Query: 61  SADSS-RRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGA-GVKGKKKLG 120
           SADSS RR R+HHRRNASEFVTGSM  DL  DK+KK+GSIRIS DGG GA G  GKKKLG
Sbjct: 61  SADSSHRRRRQHHRRNASEFVTGSMTADLFGDKMKKSGSIRISADGGAGAKGGGGKKKLG 120

Query: 121 FWSRLL 124
           FWSRLL
Sbjct: 121 FWSRLL 126

[Close]

BLAST of CSPI04G04570 vs. TAIR 10
Match: AT1G35210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22470.1); Has 83 Blast hits to 83 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.9e-04
Identity = 39/134 (29.10%), Postives = 58/134 (43.28%), Query Frame = 0


Query: 3   KSESAKECKRHPNHNLLPGICPSCLREKLQQFHQSPN---------YSDSQSTFSSPSSS 62
           K+++A  CK+HP H   PG+C  CL E+L  F ++ +          S S ST SS SS 
Sbjct: 24  KTKNAVFCKKHPKHRQSPGVCSLCLNERLSLFIKAASSRRPRSRQILSTSSSTTSSLSSD 83

Query: 63  SSDFFFSADSSRRHRRHHRRNASEFVTGSMAVDLLADKLKKTGSIRISTDGGTGAGVKGK 122
            S    S  S    RR +   +     GS   + +   + K+ S+    D       K K
Sbjct: 84  GSSSVSSCPSPIVDRRRYLLMSG----GSGRGEKVISWMTKSRSVAYKVDDEKRRKKKTK 143

Query: 123 KKLGFWSRLLLRPK 128
              GF+  L++  K
Sbjct: 144 TNSGFFFGLVMGTK 153

The following BLAST results are available for this feature:

BLAST of CSPI04G04570 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G04570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZB2	2.9e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026920 PE=4 SV=1	[more]
A0A5A7TS78	3.9e-64	96.99	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CZT1	1.9e-63	96.24	DUF740 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BWL8	1.9e-63	96.24	uncharacterized protein LOC103494420 OS=Cucumis melo OX=3656 GN=LOC103494420 PE=...	[more]
A0A6J1JAI6	3.9e-40	70.68	uncharacterized protein LOC111483218 OS=Cucurbita maxima OX=3661 GN=LOC111483218...	[more]

BLAST of CSPI04G04570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745668.1	5.9e-67	100.00	uncharacterized protein LOC116406103 [Cucumis sativus] >XP_031745670.1 uncharact...	[more]
KAA0044717.1	8.0e-64	96.99	DUF740 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008453802.1	4.0e-63	96.24	PREDICTED: uncharacterized protein LOC103494420 [Cucumis melo] >TYK16870.1 DUF74...	[more]
XP_011653117.2	1.9e-57	99.15	uncharacterized protein LOC105435176 [Cucumis sativus]	[more]
XP_038900289.1	2.6e-46	84.13	uncharacterized protein LOC120087549 [Benincasa hispida]	[more]

BLAST of CSPI04G04570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35210.1	9.9e-04	29.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008004	Protein OCTOPUS-like	PFAM	PF05340	DUF740	coord: 6..78 e-value: 6.6E-7 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR34046	OS06G0218800 PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34046:SF18	RAPIDLY ELICITED PROTEIN, PUTATIVE-RELATED	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04570.1	CSPI04G04570.1	mRNA