CSPI04G04370 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G04370
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	late embryogenesis abundant protein At5g17165-like
Location	Chr4: 2842734 .. 2843200 (-)
RNA-Seq Expression	CSPI04G04370
Synteny	CSPI04G04370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTATATTTTCCTTATTTACAATTTTCCGATAGTGTTCTTAAATCTGAATTGTTCTCTTGCAATCGACCACTCTTTCTTCAATTTATATACTAAGTAAATCTTTGTGTTGATTCTTCACTGTTTATGTTTTTCAATTGATCTTTCTATGCTTAATGACTTTACACTTTTAATGTTGAAATAGGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCCGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

mRNA sequence

ATGATGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCCGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

Coding sequence (CDS)

ATGATGAGAGCAGCTCACACCTCAGTGTATGACAAGAACCCAGAGGAGCAAGTTCGACCATCCATAGTCCCAGATGATGTGATTCAACCTCAAGCAGCAGCTGACAACTACTGGGCTCCTCATCCACAAACCGGAGTTTTTGGACCGGCCTCAGACAATCCTGCTGCAGTGGCGGCGGCAGCCAACCGTGCAGCCGATGGTGGCAACTACTCCGCTGTGGAGGAGGAAAAAGCTTGGTTCCGACCAACAAGTCTGGAGGATTCGGAGAAGCCCCACGGGTTATAG

Protein sequence

MMRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL*

Homology

[Close]

BLAST of CSPI04G04370 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-19
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           R  HTS YDKN EE+++PS VPD++I+P   +D YW+PHPQTGVFGP+S      +  A 
Sbjct: 32  RNDHTSAYDKNVEEELQPSQVPDEMIKPD--SDKYWSPHPQTGVFGPSSS-----STNAK 91

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPH 93
               GG   +V EEKAWFRPTSLED +K H
Sbjct: 92  DEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

[Close]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL
Match: A0A0A0KUG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025720 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MMRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAA 60
          MMRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAA
Sbjct: 1  MMRAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAA 60

Query: 61 ANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
          ANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 61 ANRAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 94

[Close]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL
Match: A0A5D3CZU9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.0e-39
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 12  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ-AADKYWAPHPQTGVFGPTSDNPAAV-AAAN 71

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 72  RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 101

[Close]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL
Match: A0A1S3BYE5 (uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.0e-39
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 43  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ-AADKYWAPHPQTGVFGPTSDNPAAV-AAAN 102

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 103 RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 132

[Close]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL
Match: A0A5A7TRD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004520 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.5e-38
Identity = 85/92 (92.39%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQP  AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 12  RAAHTSVYDKNPEEQVRPSIVPDDVIQP-LAADKYWAPHPQTGVFGPTSDNPAAV-AAAN 71

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 72  RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 101

[Close]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL
Match: A0A6J1JAZ8 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 GN=LOC111482838 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTS YDKN +EQVRPSIVPDDVIQPQ +AD YWAPHPQTGVFGPA+ NP  +AA AN
Sbjct: 42  RAAHTSTYDKNHDEQVRPSIVPDDVIQPQ-SADKYWAPHPQTGVFGPATINP--MAAVAN 101

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHG 94
             ADGGNYS VEEEKAWFRPTSLEDSEKPHG
Sbjct: 102 HTADGGNYSIVEEEKAWFRPTSLEDSEKPHG 129

[Close]

BLAST of CSPI04G04370 vs. NCBI nr
Match: XP_004146886.1 (late embryogenesis abundant protein At5g17165 [Cucumis sativus] >KAE8649143.1 hypothetical protein Csa_014444 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN
Sbjct: 42  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 101

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 102 RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 133

[Close]

BLAST of CSPI04G04370 vs. NCBI nr
Match: XP_008453829.1 (PREDICTED: uncharacterized protein LOC103494437 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 43  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ-AADKYWAPHPQTGVFGPTSDNPAAV-AAAN 102

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 103 RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 132

[Close]

BLAST of CSPI04G04370 vs. NCBI nr
Match: TYK16890.1 (uncharacterized protein E5676_scaffold130G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 86/92 (93.48%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 12  RAAHTSVYDKNPEEQVRPSIVPDDVIQPQ-AADKYWAPHPQTGVFGPTSDNPAAV-AAAN 71

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 72  RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 101

[Close]

BLAST of CSPI04G04370 vs. NCBI nr
Match: XP_038901450.1 (late embryogenesis abundant protein At5g17165-like [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 5.4e-38
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTS YDKNP+EQVRPS+VPDDVIQ Q AAD YWAPHPQTGVFGPASDNPA  AAAAN
Sbjct: 42  RAAHTSAYDKNPDEQVRPSVVPDDVIQSQ-AADKYWAPHPQTGVFGPASDNPA--AAAAN 101

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL
Sbjct: 102 RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 130

[Close]

BLAST of CSPI04G04370 vs. NCBI nr
Match: KAA0044696.1 (uncharacterized protein E6C27_scaffold46G004520 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 9.2e-38
Identity = 85/92 (92.39%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           RAAHTSVYDKNPEEQVRPSIVPDDVIQP  AAD YWAPHPQTGVFGP SDNPAAV AAAN
Sbjct: 12  RAAHTSVYDKNPEEQVRPSIVPDDVIQP-LAADKYWAPHPQTGVFGPTSDNPAAV-AAAN 71

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPHGL 95
           RAAD GNYSA EEEKAWFRPTSLEDSEKPHGL
Sbjct: 72  RAADVGNYSAAEEEKAWFRPTSLEDSEKPHGL 101

[Close]

BLAST of CSPI04G04370 vs. TAIR 10
Match: AT5G17165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-20
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           R  HTS YDKN EE+++PS VPD++I+P   +D YW+PHPQTGVFGP+S      +  A 
Sbjct: 32  RNDHTSAYDKNVEEELQPSQVPDEMIKPD--SDKYWSPHPQTGVFGPSSS-----STNAK 91

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPH 93
               GG   +V EEKAWFRPTSLED +K H
Sbjct: 92  DEFRGGQEDSVMEEKAWFRPTSLEDLDKTH 114

[Close]

BLAST of CSPI04G04370 vs. TAIR 10
Match: AT3G03150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 93.6 bits (231), Expect = 9.2e-20
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 3   RAAHTSVYDKNPEEQVRPSIVPDDVIQPQAAADNYWAPHPQTGVFGPASDNPAAVAAAAN 62
           R+ H+S YDKN E+++  S VPD+VI+P   +D YW+PHP+TGVFGP++   +A A  A+
Sbjct: 38  RSGHSSAYDKNVEDELHASAVPDEVIKPD--SDKYWSPHPKTGVFGPSTTEHSATAEGAH 97

Query: 63  RAADGGNYSAVEEEKAWFRPTSLEDSEKPH 93
           +       +AV EE AWFRPTSLEDS+K H
Sbjct: 98  QD------TAVLEETAWFRPTSLEDSDKTH 119

The following BLAST results are available for this feature:

BLAST of CSPI04G04370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KFM8	1.5e-19	55.56	Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CSPI04G04370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG6	2.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025720 PE=4 SV=1	[more]
A0A5D3CZU9	9.0e-39	93.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BYE5	9.0e-39	93.48	uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=...	[more]
A0A5A7TRD4	4.5e-38	92.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1JAZ8	1.1e-33	83.52	late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CSPI04G04370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146886.1	1.0e-44	100.00	late embryogenesis abundant protein At5g17165 [Cucumis sativus] >KAE8649143.1 hy...	[more]
XP_008453829.1	1.9e-38	93.48	PREDICTED: uncharacterized protein LOC103494437 [Cucumis melo]	[more]
TYK16890.1	1.9e-38	93.48	uncharacterized protein E5676_scaffold130G00220 [Cucumis melo var. makuwa]	[more]
XP_038901450.1	5.4e-38	91.30	late embryogenesis abundant protein At5g17165-like [Benincasa hispida]	[more]
KAA0044696.1	9.2e-38	92.39	uncharacterized protein E6C27_scaffold46G004520 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G04370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17165.1	1.1e-20	55.56	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G03150.1	9.2e-20	52.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR35122:SF2	OSJNBA0093F12.14 PROTEIN	coord: 2..92
IPR039291	Late embryogenesis abundant protein At5g17165-like	PANTHER	PTHR35122	OSJNBA0093F12.14 PROTEIN	coord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04370.1	CSPI04G04370.1	mRNA