CSPI04G04280 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G04280
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	Chr4: 2793146 .. 2794687 (-)
RNA-Seq Expression	CSPI04G04280
Synteny	CSPI04G04280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGCGCTGCGCAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGGTGAGTGCATCTCATTTTTATAATTTTGAGTTAGAAGAAAACTCGATTTCGATTTCTAAACTTTTGGATAGTAAATACCTCTCGTTAATTAGTTATTGAAGGTAAATTGTTAAAATTACTTTTATTATGTCCTAATCATTTCAAAACTCACCTTTAATCACTCAAAATTGATTTATTATTCAATTTTATACTTCATGCAACTTTAATATTACAATTTAGTAATTTATGAACAATATTAATCACTCAAGATTGCTACCGTTATTAAAAAATTAAAAGTACATTAACAGAATTCTTACAAATTAAACTAAGACAATTCATAAAAATTATGAAACCAAAAGTATTAATTTTTAACCATAATCTTACAAACCATATATTGAACGATTAAATTTATTATAGCCTATCAACCTTTTAATTAATAGCATAGTCTACTTTTGTATATGTCATCAAGTATTATTCATAATGTGAATTAGAAGTTTGGATTAGCGTTATAAATTATTGTACACATTGTAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTATGATTCAAAAACAAATAAACAAGCAGCTAATCAATTAACTGTCTGTCTTATCCACTAAATTAAACTAACGTTTTGAATTGATATGTTGTTCTTGTTTGTTTGTTTGTTGATGGATGATGATGATGATGAAGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGATATCATAATTAATACCCCTAATCAACAACATAAGCAAAAAGGCATTTAATTAAGTATCTCTCTCTATGTATATTTTGTTTCCAAAAATTAGACTTGTTTTTAACTCTCTTTATATTTTCATCTCCCCTTTCTGCCTTAATTAACTAATTTAGAAAGAATGAAAATATTTGAGTCCTTT

mRNA sequence

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGCGCTGCGCAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGATATCATAATTAATACCCCTAATCAACAACATAAGCAAAAAGGCATTTAATTAAGTATCTCTCTCTATGTATATTTTGTTTCCAAAAATTAGACTTGTTTTTAACTCTCTTTATATTTTCATCTCCCCTTTCTGCCTTAATTAACTAATTTAGAAAGAATGAAAATATTTGAGTCCTTT

Coding sequence (CDS)

ATGGCTTCAATTGCTATCTCTGCCTCATTGCCAAGAGCATCCAATTCAAATCATGTCTCCATGAAGAAAAAACGTGTTCATCTAGCTAAACCCGGCTATTCCTCAACGACGAAAAACCCAACACCAAAGGTAATTAGTACTCTTGATGTCGTGAACCGAGACGATGGCGCTGCGCAGCAGTATCGTCGTGGAAATGCTGCATCAGCTGTGGTTAAGGAAGAGGAAGATAATAATGATGATTGGAATAACAATGGTGAAAGATTTACTGATAAGAGATGGAAAAATGGAACTTGGGATCTCAATATGTTTGTACAGAATGGTAAGATGGATTGGGAAGGTGTCATTGTTGAAGAAGCAAAGAGGAGGAAGTTTCTTGAAATACATCCAGAAGCAGCTACAAATCAAGAACCTGTGGTCTTCAGAAGCTCCATTATACCTTGGTGGGTATGGCTCACCAAGTCCTACCTTCCACAAGCCGAACTACTTAATGGTAGGGCAGCGATGATAGGGTTCTTCATGGGGTATGCAGTGGATGCATTAACAGGAGTTGGAATAGTTGGGCAAAGCGGGAATTTCATATGCAAAACAGCTCTTTTTTTAACTGTCATTGGCGTGTTGCTGTTTAGGCAAAGTGAAGATATTGAGAACTTAAGGAATATAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAATCTTCATGGCAAAAACCAAAATGA

Protein sequence

MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK*

Homology

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BLAST of CSPI04G04280 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-54
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 87  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 146
           +F D RW NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N EPV+F +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 147 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 206
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 207 LFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
             R++ED++ L+N+ +E T YDKQWQ++W+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

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BLAST of CSPI04G04280 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-52
Identity = 90/152 (59.21%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 87  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 146
           ++ + +W NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N E VVF +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 147 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 206
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 207 LFRQSEDIENLRNIAEEATFYDKQWQSSWQKP 239
             R++ED++ L+++ +E T YDKQWQ++W++P
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKEP 249

[Close]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL
Match: A0A0A0KUF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.6e-131
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKK-RVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60
           MASIAISASLPRASNSNHVSMKKK RVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60

Query: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
           QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA
Sbjct: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240
           LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240

[Close]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.5e-116
Identity = 213/241 (88.38%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKR--VHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAA 60
           MASIAISASLPRA+N NHVSMKKK+   HLAKP YSS TKNPTPKVISTLDV NRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQ--YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
           QQ  + RGN AS+ V + E++NDDWNNNGERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.5e-116
Identity = 213/241 (88.38%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKR--VHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAA 60
           MASIAISASLPRA+N NHVSMKKK+   HLAKP YSS TKNPTPKVISTLDV NRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQ--YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
           QQ  + RGN AS+ V + E++NDDWNNNGERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.7e-92
Identity = 176/236 (74.58%), Postives = 196/236 (83.05%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQ 60
           MASIAISAS  R+  SNHVS K++    A+P YSS TKNPTP++I T DV NRD      
Sbjct: 47  MASIAISASFRRSCTSNHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDAP 106

Query: 61  YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAK 120
            R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EAK
Sbjct: 107 KRHGNVASATDKLEEDTDD--MNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 166

Query: 121 RRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDAL 180
           RRKFLE++PE ATNQEPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDAL
Sbjct: 167 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 226

Query: 181 TGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
           TG+GIVGQSGNFI K ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 227 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 280

[Close]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 3.7e-89
Identity = 176/236 (74.58%), Postives = 198/236 (83.90%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQ 60
           MASIAISAS PR+  SNHVS K++R   A+P YSS TKNPTP++I T  V +RD   A +
Sbjct: 1   MASIAISASFPRSCTSNHVSNKQQR-RQARPTYSSMTKNPTPELIKTPYVGDRDALDAPK 60

Query: 61  YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAK 120
            R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EAK
Sbjct: 61  -RHGNVASATDKLEEDTDD--MNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120

Query: 121 RRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDAL 180
           RRKFLE++PE ATN EPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDAL
Sbjct: 121 RRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 180

Query: 181 TGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
           TG+GIVGQSGNFI K ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQASWQ 232

[Close]

BLAST of CSPI04G04280 vs. NCBI nr
Match: XP_004146894.2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativus] >KGN53183.1 hypothetical protein Csa_014674 [Cucumis sativus])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKK-RVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60
           MASIAISASLPRASNSNHVSMKKK RVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ
Sbjct: 1   MASIAISASLPRASNSNHVSMKKKQRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQ 60

Query: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120
           QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA
Sbjct: 61  QYRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEA 120

Query: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180
           KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA
Sbjct: 121 KRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDA 180

Query: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240
           LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK
Sbjct: 181 LTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQKPK 240

[Close]

BLAST of CSPI04G04280 vs. NCBI nr
Match: XP_008453842.1 (PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa] >TYK16897.1 Chlorophyll A-B binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 427.6 bits (1098), Expect = 7.3e-116
Identity = 213/241 (88.38%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKR--VHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAA 60
           MASIAISASLPRA+N NHVSMKKK+   HLAKP YSS TKNPTPKVISTLDV NRDDGAA
Sbjct: 1   MASIAISASLPRAANPNHVSMKKKQQHAHLAKPAYSSMTKNPTPKVISTLDVGNRDDGAA 60

Query: 61  QQ--YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIV 120
           QQ  + RGN AS+ V + E++NDDWNNNGERFTDKRWKNGTWDLNMFV+NGKMDWEGVIV
Sbjct: 61  QQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVIV 120

Query: 121 EEAKRRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYA 180
           EEAKRRKFLE+HPEAATN+EPV+FRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 
Sbjct: 121 EEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYG 180

Query: 181 VDALTGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 238
           VDALTG+GIVGQSGNFICKTALFLTVIGVLLFRQSED+ENLRNIAEEATFYDKQWQSSWQ
Sbjct: 181 VDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSSWQ 240

[Close]

BLAST of CSPI04G04280 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 351.7 bits (901), Expect = 5.1e-93
Identity = 184/236 (77.97%), Postives = 197/236 (83.47%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQ 60
           MASIAISASLPRAS SNHV +K               KNPT KVISTLDV +R DG    
Sbjct: 1   MASIAISASLPRASTSNHVFVK---------------KNPTQKVISTLDVGDR-DGVGAV 60

Query: 61  YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAK 120
            R GN ASA  K EED NDDW N+GE+FTDKRWKNGTWDLNMFV+NGKMDWEGVIV EAK
Sbjct: 61  ERHGNVASAREKVEED-NDDW-NHGEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120

Query: 121 RRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDAL 180
           RRKFLE++PEAATNQEPV+FRSS+IPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDAL
Sbjct: 121 RRKFLELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYIVDAL 180

Query: 181 TGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
           TG+GIVGQSGNFICK ALF TVIGVLLFRQ+EDIE+LRNIAEEAT YDKQWQ+SWQ
Sbjct: 181 TGIGIVGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTSWQ 218

[Close]

BLAST of CSPI04G04280 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 9.6e-92
Identity = 176/236 (74.58%), Postives = 196/236 (83.05%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQ 60
           MASIAISAS  R+  SNHVS K++    A+P YSS TKNPTP++I T DV NRD      
Sbjct: 47  MASIAISASFRRSCTSNHVSKKQQHARQARPTYSSMTKNPTPELIRTPDVGNRDAAFDAP 106

Query: 61  YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAK 120
            R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EAK
Sbjct: 107 KRHGNVASATDKLEEDTDD--MNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 166

Query: 121 RRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDAL 180
           RRKFLE++PE ATNQEPV+FRSSIIPWW WLTKSYLPQAELLNGRAAMIGFFM Y VDAL
Sbjct: 167 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 226

Query: 181 TGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
           TG+GIVGQSGNFI K ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 227 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 280

[Close]

BLAST of CSPI04G04280 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.7 bits (870), Expect = 2.0e-89
Identity = 173/236 (73.31%), Postives = 198/236 (83.90%), Query Frame = 0


Query: 1   MASIAISASLPRASNSNHVSMKKKRVHLAKPGYSSTTKNPTPKVISTLDVVNRDDGAAQQ 60
           MASIAISAS PR+  SNHVS  ++    A+P +SS TKNPTP++I T DV +RD   A +
Sbjct: 1   MASIAISASFPRSCTSNHVSKNQQHARQARPTHSSMTKNPTPELIRTPDVGDRDAFDAPK 60

Query: 61  YRRGNAASAVVKEEEDNNDDWNNNGERFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAK 120
            R GN ASA  K EED +D   N+G+ FTD+RWKNGTWDLNMFV+NGKMDWEGVIV EAK
Sbjct: 61  -RHGNVASATDKLEEDTDD--LNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120

Query: 121 RRKFLEIHPEAATNQEPVVFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDAL 180
           RRKFLE++PE ATN EPV+FRSSIIPWW WLT+SYLPQAELLNGRAAMIGFFM Y VDAL
Sbjct: 121 RRKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDAL 180

Query: 181 TGVGIVGQSGNFICKTALFLTVIGVLLFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
           TG+GIVGQSGNFI K+ALF+TVIGVLLFRQ++DIE LR +AEEATFYDKQWQ+SWQ
Sbjct: 181 TGIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQASWQ 233

[Close]

BLAST of CSPI04G04280 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-55
Identity = 93/150 (62.00%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 87  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 146
           +F D RW NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N EPV+F +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 147 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 206
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 207 LFRQSEDIENLRNIAEEATFYDKQWQSSWQ 237
             R++ED++ L+N+ +E T YDKQWQ++W+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAAWK 250

[Close]

BLAST of CSPI04G04280 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-54
Identity = 90/152 (59.21%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 87  RFTDKRWKNGTWDLNMFVQNGKMDWEGVIVEEAKRRKFLEIHPEAATNQEPVVFRSSIIP 146
           ++ + +W NGTWDL  F ++GK DW+ VIV EAKRRK+LE +PE  +N E VVF +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 147 WWVWLTKSYLPQAELLNGRAAMIGFFMGYAVDALTGVGIVGQSGNFICKTALFLTVIGVL 206
           WW W+ + +LP+AELLNGRAAMIGFFM Y VD+LTGVG+V Q GNF CKT LF+ V GVL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 207 LFRQSEDIENLRNIAEEATFYDKQWQSSWQKP 239
             R++ED++ L+++ +E T YDKQWQ++W++P
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAAWKEP 249

The following BLAST results are available for this feature:

BLAST of CSPI04G04280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	2.8e-54	62.00	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	1.2e-52	59.21	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of CSPI04G04280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUF5	6.6e-131	99.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025130 PE=4 SV=1	[more]
A0A5D3CYT8	3.5e-116	88.38	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	3.5e-116	88.38	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]
A0A6J1JAE2	4.7e-92	74.58	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	3.7e-89	74.58	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]

BLAST of CSPI04G04280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146894.2	1.4e-130	99.58	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucumis sativu...	[more]
XP_008453842.1	7.3e-116	88.38	PREDICTED: uncharacterized protein LOC103494445 [Cucumis melo] >KAA0044687.1 Chl...	[more]
XP_038875279.1	5.1e-93	77.97	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]
XP_022984403.1	9.6e-92	74.58	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_023551912.1	2.0e-89	73.31	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]

BLAST of CSPI04G04280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	2.0e-55	62.00	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	8.5e-54	59.21	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 9..238
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 9..238
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 145..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04280.1	CSPI04G04280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane