CSPI04G03880 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G03880
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 2432625 .. 2433137 (+)
RNA-Seq ExpressionCSPI04G03880
SyntenyCSPI04G03880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCGTAAGTACTCAATTTAAATCCATTTGTTTTTCTCTTCATTCTATTTTGTGTTGATTTGATCCCTAACTCTCGATATGTATATATATTGAATCCGTTCCTTTTTAATGAATGCACATTTTTCCAATCTAATCGAAATATCTTGTATACGCTACCATGTTTTAATCCCATCTTGACACTGTGTAGTTATATAATTTTGCACTTTGTGTGTATGTTTATTTATTACGATCTTACTTGAACCTGATTTACATTGTGTCCTTATATTCTAAAGTTTTTATTTATTCATTTATTCATCTTATTCAGAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

mRNA sequence

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Coding sequence (CDS)

ATGGGTTCAATTAAAGTCTTACATATTTTGGTTGCACTTTTACTTATTGCCCTTATATTGGCTTCTAATGTTTCTTGTTCCAGGAAATTGCTTGATGTAGCTCAAGCACCAAGTTATGGACCAGCAATGCTGATCCAGCCCGCTGATGCTCCCTTTGATGGGAACTACTCTTATGGACCAACCATGAAGCCAGCAGCGGCTGCAGCCAGCTGA

Protein sequence

MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGPTMKPAAAAAS*
Homology
[Close]
BLAST of CSPI04G03880 vs. ExPASy TrEMBL
Match: A0A0A0KZ49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022230 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

[Close]
BLAST of CSPI04G03880 vs. NCBI nr
Match: KGN53136.1 (hypothetical protein Csa_014655 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 7.1e-27
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60
          MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP
Sbjct: 1  MGSIKVLHILVALLLIALILASNVSCSRKLLDVAQAPSYGPAMLIQPADAPFDGNYSYGP 60

Query: 61 TMKPAAAAAS 71
          TMKPAAAAAS
Sbjct: 61 TMKPAAAAAS 70

The following BLAST results are available for this feature:
BLAST of CSPI04G03880 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G03880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ493.5e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022230 PE=4 SV=1[more]
BLAST of CSPI04G03880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53136.17.1e-27100.00hypothetical protein Csa_014655 [Cucumis sativus][more]
BLAST of CSPI04G03880 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03880.1CSPI04G03880.1mRNA