CSPI04G03860 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G03860
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionAconitate hydratase
LocationChr4: 2405930 .. 2407215 (-)
RNA-Seq ExpressionCSPI04G03860
SyntenyCSPI04G03860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAAAGAGAGAAAAGGTTTATAGAAAGAGAGTTTGAGGTCAATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTGTAAGTCCCCATATGCCATTCTACTTCTCCTCTCTTTATTTTTAATTACCTCTTCATTGCAAATATTCATTACATTTGGAGTGATTCGGGAGTGAGTTTTTTCATTTTCAAAATCACTTTGAAAACTTGGTTTTAGAAATTTAAAATCAATTTTGATGGATGTGAATATCATTCATGTTTTAAAAGATTAATGGAATATTAATCTAAATAAGTTAACGATCGAGGATGAGAAAGTTGGTGACAGAGAGGAAAAAAAAGACCAATCCCTCTCTATTTCTTACATCTCAATTAATAGAGATTTTGCGATGTAGAATGGTACTATGACATTTAAAAATATAAAATCAATCATTAAATTAATTAATTTGAAATGTTTATCAACATGTTTCAAAGTCATTTTTAAACCATTCACAAAATTAATGGTGGAAAAAACCAAAAAGTAAAGAAATGTAATTACATGACTAACATTTTATATATATAAGTAACATTTCCATTATAAGAAAAGAAAGATGATCAAATTAGAGCTTTAGTTGTTCTTGAGTTTTGTGTGTTTTATGGTGTAACAGTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGACGGCTATGGAAAATTGGTTATGAGAGAGTGTAGTACTTCATGATGATCATATATAATATAAATACACTGTGGCTGAAGTATCATGAATAAAAACATGGGTTTTAAGTCAACAACGTAAGCATTTTTATTTGTGAATGTTGTCTCAAATTAGTGTTTGACATGATGATATATACCATGAAACGTTTTGTAGTAGAATTATATTTTTGAAGTGATGCTGTTGATTTGGAGAAATTGGGCCAAAGTTATAGACAAAATATGGAAAAGTTGGGAGAACAGTGAAAGAGTTTGGACTTCAAACTCTAAGAAGCAAAGCATTGATGTATGAAGTATGGTAATATGATGCTTATTATTCAAGAAAAAAGTAATTCCGTGTGGAAGACCAAATACAAAGGAAATTAAGAATCATAACAATGTCGATCATAACAGACCGAG

mRNA sequence

CGAAAAGAGAGAAAAGGTTTATAGAAAGAGAGTTTGAGGTCAATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGACGGCTATGGAAAATTGGTTATGAGAGAGTGTAGTACTTCATGATGATCATATATAATATAAATACACTGTGGCTGAAGTATCATGAATAAAAACATGGGTTTTAAGTCAACAACGTAAGCATTTTTATTTGTGAATGTTGTCTCAAATTAGTGTTTGACATGATGATATATACCATGAAACGTTTTGTAGTAGAATTATATTTTTGAAGTGATGCTGTTGATTTGGAGAAATTGGGCCAAAGTTATAGACAAAATATGGAAAAGTTGGGAGAACAGTGAAAGAGTTTGGACTTCAAACTCTAAGAAGCAAAGCATTGATGTATGAAGTATGGTAATATGATGCTTATTATTCAAGAAAAAAGTAATTCCGTGTGGAAGACCAAATACAAAGGAAATTAAGAATCATAACAATGTCGATCATAACAGACCGAG

Coding sequence (CDS)

ATGGGTTTAAAGAGAGAGTCCATATTTTTTAGTGTTATGCTTCTTCTTCTTCTTTCAAATATGGCAACAGGGAGAGTACTCTTCCATTCTACTTCACTTCATGCAGATTTTGAGACGATCAATATGGATGGGAAGAATAGGGATGGGAGTCGTTTTCTGAGTTCGGCTCTGCCTCGAGGTGGCAACTATATTAACAAACCCCATGCAGCAGAGAAGGCTGCGGTTGGACGCGCCGGCTACCAACCATGA

Protein sequence

MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGYQP*
Homology
[Close]
BLAST of CSPI04G03860 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFET+NMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of CSPI04G03860 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.3e-20
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 21 MATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGY 80
          MATGR L +STSLH DFET+NMDGKNRDGSR LS+ALPRGGNYIN PHAAEKAAV R+GY
Sbjct: 1  MATGR-LIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGY 60

Query: 81 QP 83
          QP
Sbjct: 61 QP 61

[Close]
BLAST of CSPI04G03860 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRG 60
          MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFET+NMDGKNRDGSRFLSSALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYINKPHAAEKAAVGRAGYQP
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]
BLAST of CSPI04G03860 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 21 MATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRGGNYINKPHAAEKAAVGRAGY 80
          MATGR L +STSLH DFET+NMDGKNRDGSR LS+ALPRGGNYIN PHAAEKAAV R+GY
Sbjct: 1  MATGR-LIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGY 60

Query: 81 QP 83
          QP
Sbjct: 61 QP 61

[Close]
BLAST of CSPI04G03860 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETINMDGKNRDGSRFLSSALPRG 60
          MGLKR  I  SVM+L+L+ +MATGR +  +T   ADFET+NM G+   G++ LSSA PRG
Sbjct: 1  MGLKRAPILLSVMVLVLV-HMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRG 60

Query: 61 GNYINKPHAAEKAAVGRAGYQP 83
          GNYI+ P AA KAA+  +GY P
Sbjct: 61 GNYIDNPQAANKAAIQTSGYHP 81

The following BLAST results are available for this feature:
BLAST of CSPI04G03860 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G03860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXI81.6e-3698.78Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1[more]
A0A5A7TTS96.3e-2083.87Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G... [more]
BLAST of CSPI04G03860 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53132.13.4e-3698.78hypothetical protein Csa_014795 [Cucumis sativus][more]
KAA0044639.11.3e-1983.87Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [... [more]
KAG6600180.12.0e-1256.10hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI04G03860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03860.1CSPI04G03860.1mRNA