CSPI04G03730 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G03730
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDUF1336 domain-containing protein
LocationChr4: 2304406 .. 2305064 (+)
RNA-Seq ExpressionCSPI04G03730
SyntenyCSPI04G03730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATAATTCAACTGGACAAGGTAATTATGGTTAATATCAAAACGTTGAAGGTATGAATCTTTACTTTACATATGATGTTGCTACAACAATTTTGGGTCTACACTGTCGATTCTTAACTGGTGTTAATTATATATGTATCACAACGAATTACAAATTGTCATTTTTGTGGTTGTGCGTGTGCGGTCGCTGACAAATTCGTGTTAATGTGTACATCTACGGTATGATGTACTCATCTCTTCTTTGGCTTCGTTCACATGCAGGTGCAATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCGACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAAATTCTCAATGTATGACTAAAATCTCACATACTAAAAAGATAAAAGTTCATGTGCTTTATTCTCTCTTGGC

mRNA sequence

ATATAATTCAACTGGACAAGGTAATTATGGTTAATATCAAAACGTTGAAGGTGCAATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCGACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAAATTCTCAATGTATGACTAAAATCTCACATACTAAAAAGATAAAAGTTCATGTGCTTTATTCTCTCTTGGC

Coding sequence (CDS)

ATGCAAGGTGATGATGCAAATAGACGTCGTCATGATCGAGACTTTTGGCATTCACGACAGGCGTTTTTAAAAAGCTATAACTTATCCAATGGATATAGAAGAGATGATGGATTGAAAGGCAAGATGAAGAGGACGATGAAAGAGCTCAATAGATCGACTAGTCGAATGGTTGGAGGCATTTGTGAAGACATGGCTAAAAGGAAGTTTGGAATTAGGGTTTATAGGCTCACGATAAGTCTCCCATCAATGGTTTTTATGACAGTGAGGTGTTTTTTGCCATCATTTAGGAACAAAGAGAATACACTACAAACATATAGTTACTAA

Protein sequence

MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY*
Homology
[Close]
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match: A0A0A0KW75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017070 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.5e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 16  MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 75
           MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 76  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 123
           CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 107

[Close]
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match: A0A803Q2Y5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0 

Query: 26  HD-RDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRKF 85
           HD RDFW SR+AFL SY+LSN  R D G KGK+KR++KELN      +  I   +++R+F
Sbjct: 38  HDGRDFWSSRRAFLSSYHLSNQQRADQGFKGKLKRSVKELNGVAVAALSNIRHQVSRRRF 97

Query: 86  GIRVYRLTISLPSMVFMTVRCFLP 109
           G+RV+RLT+SLPS + ++VRCF P
Sbjct: 98  GVRVFRLTMSLPSFLHVSVRCFTP 121

[Close]
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match: A0A7N2MT50 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-15
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0 

Query: 24  RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 83
           RRHDRD+W++R+AFL SY+ S     ++G K K++R++KELN   + +V  I   M+KRK
Sbjct: 43  RRHDRDYWYARRAFLNSYHFS----EENGFKYKLRRSVKELNEVATGVVTDIRRKMSKRK 102

Query: 84  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 116
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 103 LGIRVYRFTVALQSLVLLSIRCFTPWLNKRDS 130

[Close]
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match: A0A6A1VKL6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G009621 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 24  RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICED-MAKR 83
           R H RDFW +R+AFL SY+ S      +G K K+KR++KELN   + +VG I    M+KR
Sbjct: 35  RCHSRDFWFARRAFLSSYHFS----EQNGFKDKLKRSVKELNMVATGIVGDIRRRIMSKR 94

Query: 84  KFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENT 117
           + GIRVYRLT++LPS+V +T+RCF P    + +T
Sbjct: 95  RLGIRVYRLTVALPSLVLVTIRCFTPWLNERVST 124

[Close]
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match: A0A5N6L6G3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027010 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 21  ANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMA 80
           + RRRH R+FW++R+ FLKSY  S      +G + K+KR  KELN   + +V  I   M+
Sbjct: 30  SGRRRHGREFWYARREFLKSYQFS----EQNGSREKLKRWAKELNELVNGVVSDIRRQMS 89

Query: 81  KRKFGIRVYRLTISLPS-MVFMTVRCFLPSFRNKENTLQ 119
           +R+ GIR YR T++LPS +V +TVRCF P + NK++ LQ
Sbjct: 90  RRRVGIRAYRFTLALPSHLVLLTVRCFTP-WLNKKDCLQ 123

[Close]
BLAST of CSPI04G03730 vs. NCBI nr
Match: KGN53119.1 (hypothetical protein Csa_015375 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 16  MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 75
           MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI
Sbjct: 1   MQGDDANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGI 60

Query: 76  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 123
           CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY
Sbjct: 61  CEDMAKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQTYSY 107

[Close]
BLAST of CSPI04G03730 vs. NCBI nr
Match: XP_030940520.1 (uncharacterized protein LOC115965432 [Quercus lobata])

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 0 

Query: 24  RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 83
           RRHDRD+W++R+AFL SY+ S     ++G K K++R++KELN   + +V  I   M+KRK
Sbjct: 43  RRHDRDYWYARRAFLNSYHFS----EENGFKYKLRRSVKELNEVATGVVTDIRRKMSKRK 102

Query: 84  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 116
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 103 LGIRVYRFTVALQSLVLLSIRCFTPWLNKRDS 130

[Close]
BLAST of CSPI04G03730 vs. NCBI nr
Match: KAB1213284.1 (hypothetical protein CJ030_MR5G009621 [Morella rubra])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 24  RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICED-MAKR 83
           R H RDFW +R+AFL SY+ S      +G K K+KR++KELN   + +VG I    M+KR
Sbjct: 35  RCHSRDFWFARRAFLSSYHFS----EQNGFKDKLKRSVKELNMVATGIVGDIRRRIMSKR 94

Query: 84  KFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENT 117
           + GIRVYRLT++LPS+V +T+RCF P    + +T
Sbjct: 95  RLGIRVYRLTVALPSLVLVTIRCFTPWLNERVST 124

[Close]
BLAST of CSPI04G03730 vs. NCBI nr
Match: XP_023920324.1 (uncharacterized protein LOC112031845 [Quercus suber])

HSP 1 Score: 87.8 bits (216), Expect = 7.0e-14
Identity = 41/92 (44.57%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 24  RRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMAKRK 83
           RRHDRD+W++R+AFL SY+ S     ++G K K++ ++KELN   + +V  I   M+KRK
Sbjct: 43  RRHDRDYWYARRAFLNSYHFS----EENGFKYKLRGSVKELNEVATGVVTDIRRKMSKRK 102

Query: 84  FGIRVYRLTISLPSMVFMTVRCFLPSFRNKEN 116
            GIRVYR T++L S+V +++RCF P    +++
Sbjct: 103 LGIRVYRFTVALQSLVVLSIRCFTPWLNKRDS 130

[Close]
BLAST of CSPI04G03730 vs. NCBI nr
Match: KAB9210364.1 (hypothetical protein FH972_027010 [Carpinus fangiana])

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-13
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 21  ANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDMA 80
           + RRRH R+FW++R+ FLKSY  S      +G + K+KR  KELN   + +V  I   M+
Sbjct: 30  SGRRRHGREFWYARREFLKSYQFS----EQNGSREKLKRWAKELNELVNGVVSDIRRQMS 89

Query: 81  KRKFGIRVYRLTISLPS-MVFMTVRCFLPSFRNKENTLQ 119
           +R+ GIR YR T++LPS +V +TVRCF P + NK++ LQ
Sbjct: 90  RRRVGIRAYRFTLALPSHLVLLTVRCFTP-WLNKKDCLQ 123

[Close]
BLAST of CSPI04G03730 vs. TAIR 10
Match: AT2G43390.1 (unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 29/99 (29.29%), Postives = 47/99 (47.47%), Query Frame = 0 

Query: 20  DANRRRHDRDFWHSRQAFLKSYNLSNGYRRDDGLKGKMKRTMKELNRSTSRMVGGICEDM 79
           D   R   + +   R+  L SY+L    R     K K++++MK +N S  R V  + +  
Sbjct: 18  DQRERYTQKCYRDGRRIVLASYDLMGSER--FSFKEKLRKSMKGMNESAERWVSEVRQGT 77

Query: 80  AKRKFGIRVYRLTISLPSMVFMTVRCFLPSFRNKENTLQ 119
            KR+F IRV R  +   S    +V CF     +K+N ++
Sbjct: 78  TKRRFAIRVLRTKLGFYSCFIRSVGCFTSCVGHKDNFMK 114

The following BLAST results are available for this feature:
BLAST of CSPI04G03730 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G03730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW751.5e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017070 PE=4 SV=1[more]
A0A803Q2Y52.1e-1654.76Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7N2MT504.0e-1545.65Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6A1VKL61.2e-1448.94Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G009621 PE=4 SV=1[more]
A0A5N6L6G31.3e-1346.46Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027010 PE=4 SV=1[more]
BLAST of CSPI04G03730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53119.13.1e-54100.00hypothetical protein Csa_015375 [Cucumis sativus][more]
XP_030940520.18.3e-1545.65uncharacterized protein LOC115965432 [Quercus lobata][more]
KAB1213284.12.4e-1448.94hypothetical protein CJ030_MR5G009621 [Morella rubra][more]
XP_023920324.17.0e-1444.57uncharacterized protein LOC112031845 [Quercus suber][more]
KAB9210364.12.7e-1346.46hypothetical protein FH972_027010 [Carpinus fangiana][more]
BLAST of CSPI04G03730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G43390.11.3e-0529.29unknown protein; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacter... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G03730.2CSPI04G03730.2mRNA
CSPI04G03730.1CSPI04G03730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane