CSPI04G03260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G03260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
Location	Chr4: 2016110 .. 2016361 (+)
RNA-Seq Expression	CSPI04G03260
Synteny	CSPI04G03260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCGATGGCACTTTACCCATCAGCGAGCGACGAGAGTGGTACGACGTAACTCCGCTTCCGCAAGACGATGGTCCCAATCCGATTGTGGCGATTGCCTACAAACAAGACTTCTCTGAGCTCATGGGTTACTTCCGAGCTGTTTATCGAGCAGATGATCATCCTCCTCGTTCTCTCCACCTCACTGCTGAAGCCATTGCTATGAATCCTGGCAATTACACTGTAATTTCTTCTTCCTTGAATGCATGA

mRNA sequence

ATGGATTTCGATGGCACTTTACCCATCAGCGAGCGACGAGAGTGGTACGACGTAACTCCGCTTCCGCAAGACGATGGTCCCAATCCGATTGTGGCGATTGCCTACAAACAAGACTTCTCTGAGCTCATGGGTTACTTCCGAGCTGTTTATCGAGCAGATGATCATCCTCCTCGTTCTCTCCACCTCACTGCTGAAGCCATTGCTATGAATCCTGGCAATTACACTGTAATTTCTTCTTCCTTGAATGCATGA

Coding sequence (CDS)

ATGGATTTCGATGGCACTTTACCCATCAGCGAGCGACGAGAGTGGTACGACGTAACTCCGCTTCCGCAAGACGATGGTCCCAATCCGATTGTGGCGATTGCCTACAAACAAGACTTCTCTGAGCTCATGGGTTACTTCCGAGCTGTTTATCGAGCAGATGATCATCCTCCTCGTTCTCTCCACCTCACTGCTGAAGCCATTGCTATGAATCCTGGCAATTACACTGTAATTTCTTCTTCCTTGAATGCATGA

Protein sequence

MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSLHLTAEAIAMNPGNYTVISSSLNA*

Homology

[Close]

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot
Match: Q9LX33 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=FTA PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 2.6e-23
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          M+FD T+P+S+R EW DV PL QDDGPNP+V IAYK++F E M YFRA+Y +D+  PR+L
Sbjct: 1  MNFDETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRAL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LT E + +N GNYTV
Sbjct: 61 RLTEETLLLNSGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot
Match: P93227 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum OX=4081 GN=FTA PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-21
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 7  LPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSLHLTAEA 66
          +P  ER +W DV P+PQDDGP P+V IAY +DFSE M YFRA+Y AD+   R+L LT EA
Sbjct: 11 IPFKERPDWADVKPVPQDDGPCPVVPIAYTEDFSETMDYFRAIYVADERSTRALQLTGEA 70

Query: 67 IAMNPGNYTV 77
          I +NPGNYTV
Sbjct: 71 IQLNPGNYTV 80

[Close]

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot
Match: O24304 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum OX=3888 GN=FTA PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-20
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 4  DGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSLHLT 63
          D  +P+  R EW DVTP+PQDDGP+P+V I Y ++FSE+M YFRAVY A +   R+L LT
Sbjct: 10 DDRVPLRLRPEWSDVTPIPQDDGPSPVVPINYSEEFSEVMDYFRAVYFAKELSSRALALT 69

Query: 64 AEAIAMNPGNYTV 77
          AEAI +N GNYTV
Sbjct: 70 AEAIGLNAGNYTV 82

[Close]

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot
Match: Q54RT9 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=fntA PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-15
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 4  DGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSLHLT 63
          DG +P S+R EW DV PL QDDGP+PI  I Y + F + M YFRA+ ++ +   R L L 
Sbjct: 8  DGYVPFSKRPEWSDVKPLAQDDGPHPICPILYSEVFKDKMNYFRAILKSKEKSLRVLDLL 67

Query: 64 AEAIAMNPGNYTV 77
           E I  NP NYT+
Sbjct: 68 EEVIQENPSNYTI 80

[Close]

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot
Match: P29702 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bos taurus OX=9913 GN=FNTA PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 11  ERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSLHLTAEAIAMN 70
           +R EW D+ P+PQ+DGPNP+V I Y + F ++  YFRAV + D+   R+  LT +AI +N
Sbjct: 64  DRPEWADIDPVPQNDGPNPVVQIIYSEKFQDVYDYFRAVLQRDERSERAFKLTRDAIELN 123

Query: 71  PGNYTV 77
             NYTV
Sbjct: 124 AANYTV 129

[Close]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL
Match: A0A5A7TSR3 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003410 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD +LPISER EWYDVTPLPQDDGPNPIVAIAYK+DFS+LM YFRAVYRAD+  PRSL
Sbjct: 1  MDFDDSLPISERPEWYDVTPLPQDDGPNPIVAIAYKEDFSQLMSYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL
Match: A0A5D3CYK3 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001350 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD +LPISER EWYDVTPLPQDDGPNPIVAIAYK+DFS+LM YFRAVYRAD+  PRSL
Sbjct: 1  MDFDDSLPISERPEWYDVTPLPQDDGPNPIVAIAYKEDFSQLMSYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL
Match: A0A1S3BYS8 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo OX=3656 GN=LOC103494543 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD +LPISER EWYDVTPLPQDDGPNPIVAIAYK+DFS+LM YFRAVYRAD+  PRSL
Sbjct: 1  MDFDDSLPISERPEWYDVTPLPQDDGPNPIVAIAYKEDFSQLMSYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL
Match: A0A6J1GUK6 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111457674 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.8e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MD D  +P+SER EW DVTPLPQDDGPNPIVAIAYK+DF+E+M YFRAVYRAD+  PRSL
Sbjct: 1  MDSDDRIPLSERPEWSDVTPLPQDDGPNPIVAIAYKEDFAEVMNYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LTAEAIAMNPGNYTV
Sbjct: 61 DLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL
Match: A0A6J1IXT4 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111479431 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.2e-28
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MD D  +P+SER EW DVTPLPQDDGPNPIVAIAYK+DF+E+M YFRAVYRAD+  PRSL
Sbjct: 1  MDSDDRIPLSERPEWSDVTPLPQDDGPNPIVAIAYKEDFAEVMNYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LTAEAIA+NPGNYTV
Sbjct: 61 DLTAEAIAINPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. NCBI nr
Match: XP_004152103.3 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis sativus] >KAE8649109.1 hypothetical protein Csa_015204 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 70/76 (92.11%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD TLPISERREW DVTPLPQDDGPNPIVAIAYK+DFSELMGYFRAVYRAD+  PRSL
Sbjct: 1  MDFDDTLPISERREWCDVTPLPQDDGPNPIVAIAYKEDFSELMGYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. NCBI nr
Match: TYK16993.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD +LPISER EWYDVTPLPQDDGPNPIVAIAYK+DFS+LM YFRAVYRAD+  PRSL
Sbjct: 1  MDFDDSLPISERPEWYDVTPLPQDDGPNPIVAIAYKEDFSQLMSYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. NCBI nr
Match: XP_008453985.1 (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo] >KAA0044591.1 protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MDFD +LPISER EWYDVTPLPQDDGPNPIVAIAYK+DFS+LM YFRAVYRAD+  PRSL
Sbjct: 1  MDFDDSLPISERPEWYDVTPLPQDDGPNPIVAIAYKEDFSQLMSYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
          HLTAEAIAMNPGNYTV
Sbjct: 61 HLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. NCBI nr
Match: XP_038900826.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Benincasa hispida])

HSP 1 Score: 134.4 bits (337), Expect = 4.5e-28
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MD D +LP+SER EW DVTPLPQDDGPNPIVAIAYK+DFSELM YFRAVYR+++  PR+L
Sbjct: 1  MDSDNSLPLSERPEWSDVTPLPQDDGPNPIVAIAYKEDFSELMNYFRAVYRSNERSPRAL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LTAEAIAMNPGNYTV
Sbjct: 61 RLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. NCBI nr
Match: XP_023527416.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 5.9e-28
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          MD D  +P+SER EW DVTPLPQDDGPNPIVAIAYK+DF+E+M YFRAVYRAD+  PRSL
Sbjct: 1  MDSDDRIPLSERPEWSDVTPLPQDDGPNPIVAIAYKEDFAEVMNYFRAVYRADERSPRSL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LTAEAIAMNPGNYTV
Sbjct: 61 DLTAEAIAMNPGNYTV 76

[Close]

BLAST of CSPI04G03260 vs. TAIR 10
Match: AT3G59380.1 (farnesyltransferase A )

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-24
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MDFDGTLPISERREWYDVTPLPQDDGPNPIVAIAYKQDFSELMGYFRAVYRADDHPPRSL 60
          M+FD T+P+S+R EW DV PL QDDGPNP+V IAYK++F E M YFRA+Y +D+  PR+L
Sbjct: 1  MNFDETVPLSQRLEWSDVVPLTQDDGPNPVVPIAYKEEFRETMDYFRAIYFSDERSPRAL 60

Query: 61 HLTAEAIAMNPGNYTV 77
           LT E + +N GNYTV
Sbjct: 61 RLTEETLLLNSGNYTV 76

The following BLAST results are available for this feature:

BLAST of CSPI04G03260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX33	2.6e-23	60.53	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Ar...	[more]
P93227	4.2e-21	62.86	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=So...	[more]
O24304	6.1e-20	60.27	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pi...	[more]
Q54RT9	7.7e-15	49.32	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Di...	[more]
P29702	3.8e-14	48.48	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Bo...	[more]

BLAST of CSPI04G03260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSR3	2.5e-32	88.16	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cu...	[more]
A0A5D3CYK3	2.5e-32	88.16	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cu...	[more]
A0A1S3BYS8	2.5e-32	88.16	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cu...	[more]
A0A6J1GUK6	2.8e-28	80.26	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cu...	[more]
A0A6J1IXT4	8.2e-28	78.95	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cu...	[more]

BLAST of CSPI04G03260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152103.3	2.7e-33	92.11	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucu...	[more]
TYK16993.1	5.1e-32	88.16	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucu...	[more]
XP_008453985.1	5.1e-32	88.16	PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit ...	[more]
XP_038900826.1	4.5e-28	80.26	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Beni...	[more]
XP_023527416.1	5.9e-28	80.26	protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucu...	[more]

BLAST of CSPI04G03260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59380.1	1.9e-24	60.53	farnesyltransferase A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.25.40.120	Protein prenylyltransferase	coord: 6..78 e-value: 7.4E-24 score: 86.4
None	No IPR available	PANTHER	PTHR11129:SF1	PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHA	coord: 11..76
None	No IPR available	PANTHER	PTHR11129	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT	coord: 11..76
None	No IPR available	SUPERFAMILY	48439	Protein prenylyltransferase	coord: 4..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G03260.1	CSPI04G03260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018343	protein farnesylation
biological_process	GO:0018344	protein geranylgeranylation
cellular_component	GO:0005953	CAAX-protein geranylgeranyltransferase complex
cellular_component	GO:0005965	protein farnesyltransferase complex
molecular_function	GO:0004662	CAAX-protein geranylgeranyltransferase activity
molecular_function	GO:0004660	protein farnesyltransferase activity