CSPI04G03160 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G03160
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30S ribosomal protein S1-like
Location	Chr4: 1945933 .. 1951992 (-)
RNA-Seq Expression	CSPI04G03160
Synteny	CSPI04G03160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATGCGTCACGCAAATAAGCGATGTGTTCCCATTCGGATTTGCAGCAGTTGGTGGCTTTCCATATCCGAATCCTTTCCCATTGCGCTCCTCCCCGCCATTTTCTTCCCTTCTCTCCACTCCCACAATCATGCCAATCTTTGTTGCAACCATCGCCTCTGTCTCTGCTCATTCCTTTCTCTCACTCCTTGCTTCCACTTCTGATGCTTCTTCAACCTCCTCCTCCTCCTCCTCCATTTTACCACTCAAACCCCCCTCTAAACGCTCTTCCATTTTCCCCTCCAGAGTCTCCCTCTCCGGAAAACCTGACCCCATTGCCGGAGTTCTAGACACCTCCCCGGAATCCGTTCGACGTGCTCGGGTGAGTCACGTTCTTCTTCCCTTCTATCTATGTTGTTAACAACAGACTGGTCTGTTGTTAATTAGTTTTGAGATGCATGTTATCTAATATACCATACCAGCGTAAACGGGTATTTGATCTAATAAAAAAGAAATTGTTATCTACCAAAAGAGTCGCCATATCAGGGGCAAGTTAAGAAGTACACATTGGAAAAATCAAGGAAAATCTTGTCTGTTGTTGCCAATTGGTTTTTGATATGGAACCAACTTGTTATTAAAAATTCTCAGGTTTATGCGTCATAGATTTTAATGGACATTTTACTGTTGGACAAGTATAGGGTGGTGGGAGCGAGGAGGAATTGACATATCTTAGTTACAATTACAACTAAGTGAGAACTAGCACAATGCTTTTAGAGGAAATTGTAAAGCACCATCATGCTGTGTTATTATGGAAGGCTAGATAGAAGCTCATCAGCTTATAAAAATTGGCTTCTTATCTCAAAAAATGGTGTACCTAACCTGAGGAGAATAGCTCTACATAAGGGATTTGAGTGATACAATTCATTTTATGAAAAATAATATAACAAACCTAAGATGTGTGACAAAATAATATATGCAAGAAATTACTAATATACTTACTTTGCTATTACAAACACAAGGAAATATTAAAGGAATGGTAGGATAAGAGAAGTGCTGCATTCCATAAATCATTGAAGTTTGTTCTTCGTAGATTGAGTTGCCAAGATCCAGCAGTGATCGAAAATGCAGCATTATAGTTAAAAAACTTTTGTAGTGATATTGGGCATGTTTAATTAGGGACTTGCTAGAACGAATTGAGCATTTCCCATGAAAAGTTTATGCTTAGCCTGAGTTTCTATTACTTTCGTATAACTCTTGTAATCTAATACTTGGTTTCTGCAAAGAAGTAGAGATCTGCTGATTGGAAGGCAGCGAGGGAATACCTTGATAGTGGATTTATCTATGAGGGTAGGATTGAAGGTTCAAATGCTGGAGGTTTACTTGTGCGATTTTATTCTCTTGTTGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTTGTAAAGGTACAAGTTTTCTTAATGCTATACTTTAAATTTTGTCATAAAGTTTCCTTGACAACATATCTCATATTTTACTTTTATCTATAGTAGGTCCTGAATTAAGATCAGTCTAAAAATTATGCTTCCCTTTTTACGTGGTCATTTCTTGGGTTAAATTCTATGGAGAGGAAGTCAGCAGTTTACCTAATGATGACTTAAATTTCTTGAGCTAGATGTGTTTCAAACTTTTAACATGCTTCCTCCCTGCGCTTGCCTTCTGAATTTCTTGCAGAACCATACAAGAGTATTCAAGATATTGCAAAAAGCTTAATTGGTTCGCTTATATCAGTAAAGGTAGTTAGCTTCTATGGTTGTTCGTAACTAATCATTTATAGTTCTGAAAACTTCTCTTTAGTTAGCTGAAGACTGGTATACCTCTATATACTTGGTCACTCCCTAGGTTTACTGCTGAAAGAAAATAGGAGACTTGGATATTTGTTTCTTTAATTTCTTGATTTGTTGGATACACCTAAAATACGAAGTTGAATTATAGATGGTTTGATAATGTACACACTCAGTCACATCCCAAACACCAACTTTTGTCTTGGAGGAAGTAAAGTTCTCTACAACCATGAATCTCTTTCGAGGCTTGCTATATATATTGTTTTTCTTTTCTATCTTTCTTTCTTTCTGTCCTTTTTTTTTTCAAAAAAAAAGATTATAAGAAACGATCATTGTATTGAACCAAAAGCAAGACAACCTAGGGGTTGGAGAAAGAGGAAACCCTGAACAACAAACTTACAAAAGTGCAGTGCCCACTGTCATTGTCATTATCACAAATAATCATGGAGCAGATGAAGTCACAAAATAGTTTTTATGGTTTTTACACCAGCAAGAGGTTGTCCATTGTACACTATTACATCCGCCGAGGATGATTTCCTTAAACAATTCTCTGATTTTCTCTTTCCAAATAAACTAAGGAGTATCAATTGATGAGATGAGGAATAAATTTTTTTTTATAAAAAAACTAAAGAGTAGGTCCGACAGTTCAATTCCATAAGATTCTAGCTTTTCCTTTGAAAAAACTCAAGACATTAAATACTTTCATTTAGCCATACATCCACCCAAACTGGGAGGGAGATAACAAGTTCAAATGGAGAAAATAAAGCTCCACACTTTCTAACCAAAATATAGCAGCAGAGGAAAAATGGTCCACTGATTTCTTATCACTAAGACTCCATTGAGGAAACTTTCTCTAAATTCCGTTTTTCGTGTTTGGGCTGCTGTTTAACAAAGACCAAGTGAAGACCTTTACTTTCTTGGGCACTTCAAAGTTGGAAACTTTGTCCACTTCTGGAACACTGATCGTCGGCCTTGGTTTAGTGAGATGGACTAAGGCTGATTTAACAGAGAGCCCTGGACATATCAAGCTTCCACTGACATGACGCCATCAAAGCCCCTCTCAAATTGCACGGACTCAAGTTCACTGCCCATCTTGATAATTCCTTGTCAAACAGTTCTCTACAAATACCTTAGTTCCACGTCTGCTTTGAGCCTTGAGGCAACCCAGCAATTAGCAATAGAAGCCCCCTCTTTAGACCAGAGGCCATAGAAGTCAGTAAAAACAGAGGATAAAGAGATTTTGCCCACCCAAAGAGTCTTCCTAAAAGCATATGTGATGCCTGTTGGCCACCTCAACTGAACAAAATCCTGTAACCACTTTAGAAAATGATCACTCTCCCCAACTGTCTCATTGAAATTTTTAGAGTCCATACTGTCTTCATTGCTTCCTCTGTATCTGTCAAATGTTTTTCTGAAATTCCCCAATCATTACTCGAAATATGAATCAACATCTCCTACTAACAGCTGCAGGAACAGTAATATATTTCTTTGAGCCATCATGGAATGATGAAGTGATTTCTTCAAATCAACCACTTATTTTAATTTATTTTTTTTTCGGTACCAAGAGACTCCCATCTTAAACAGATATTCTTGAGGAATGTTTCTATCAAGAGGTTTTGAAGCATCTCAACAATTAATTGTTTGGAATTGCTTCCACAGCAGTCAATGTAAATGTAGGATATTTCCACGTTTCCTCCAACTTGATTAATGGCTGTCTAAATTATTACCATTGAAGCTAGTTTAATGGTTCTTTATTTTCTGTTGGAGTGACCATGATTAAACTTCAATTTCACTAAACCATAGAAAATCGAAAAGGTTAATCGAGAGAAAATATCTCATTCTGCATAGTGTGCTCTTTGGAAATTGAACTACTGGATGACATACCCTTGCTTATTAGGTTAAGAACCTGTTGTATACAAATTCAGCTGATCCATTTAGGTCCAAAATAAATTTTATCATCATCATGGTCAGTGAAGAAAGTAAAACACATGGATCATGTGGAGGGCAGTGCCATATTTCTTTTATTCATAAAGTGAAACGGAGAAGTTGTAATACAATGGTTTATGATGGAAATTAGGGAAAAATTAGGAGTCTCTTCCATGTGGGTGAGCTAGTTCTTTCATCATTCATATTAACATTTAACCATCTTTGGTTTTGAAATATTTAAGTAAGAATATGTTAAACCCTGCCATTTCTTATTTTCTAGGTAATCCAAGCAGATGAGAAAAACAGGAAATTGATATTTTCAGAGAAGGAAGCTGCGCGGTCAAAGTTTTCTGGGCAAGTGGCTGTGGGGGATGTTTATGAAGGCAAAGTTGGATCTGTGGAGGATTATGGTGCTTTTGTACATCTACGTCTCTCTGATGGTAATATTTTATGTTCTATTAATCTTCTTCCCTGACGCTGATGTATTTAGAAATCAATTACCACTTATTTTCCCAAATTCTGCAGGTCTTTATCATCTTACTGGGCTAGTACATGTATCAGAAGTTTCATGGGATCTAGTTCAGGATGTACGAGACATATTAAGTGAGGGTGACGAAGTGACAGTGAAGGTCATTAATGTTAACAAGCAAGTGTTCTCAGATTCCTTCTTGTTACCGACTAATTTGCTATTTGCACTTTCTAGGAAAAACCTGTTATTTGTAGTATTTTCAATTATTATGTGGTAGATTTACCTCTTTTTTCTATTATTTACTTATTTTGCTTGGGCTTCATGAAATTTGTTAGGTCCAGGGTTTTGGTTATGTTAGATAGGGGAAGTCGATTAGGAAGTAGGTGGAATTGTAGAAAGTGGGAAATTAGAGTCACAAGGATAGCTGAAGATTCTCTTAAATCGCTGCCCCATTTGTTAACAATTATTACTATTATTATGATTATTTTACCAACAATCCCCACTCCATATTAAGAATCAGAGTGCTTCTGAATCTCAATTCTCAATGAAATACAATCGGTTTTACTCTGATTATGCAATTTCTGAATTTAGAAATAGGAGACATTTGAATTGTAATTTTCGCACAAGGTTAGGAAATGGAAAACAAGGAAAATGAGATAGACTTGCTAAATTTATATCATCTCAAACTTTTAGTCCACGACCATTGGCATGCTGAATCTGTCTTATTGGTTTCATGCAGGAATAAGTCTCGGATCACATTGTCGATCAGACAACTCGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTAATACCGCAGGTTTGTAAAACATTATTGTATGCATTTAGTCAACCTTTTCAACTACTCTCATCTCCTAACTGAGCTTTAGCTATATGATGAACATCATAATTAACAGGACAGTTCTGCTGAACCTGATTCTTTTGGACCTAAAGGCGACAGCGAAATAATACCCCTCCCTGGACTTGAAACAATAATTGAAGAGCTACTGCAGGAAGAGGGGTATGTTACTATTTTTAGTTTGACATATTGAGGGTCATTTCTGAAAAGCTTTGAAAGTATCACGTGCAGTCTTTAAAGATTACTGATAACAACAATGTATCAGCATCAACAGTACGCATAAATATGCTGTGGCTTGTTCTGAGTACTTGAGGTTTAACTTTTATGCTCTTTGTTATGTCTAAATCAAAAGCTAAGATTCTAGTGATATTTGGGCATGTGCAATTTTATGGACATACCAAATTTCCTTAAGCATGGACGAAGTAATTTCACACATACAAAACGAGGAGATATGACAACCAACTAAAAAGAGCTTTTTAACTTTCTCGCTTACTTTCTCTCCATCGATTACACTTTTTGGGGTTTTAGTCATCGGTGGAGATCATATTATGTGTTTGTGGCATCTCAAGATATCTTGACCCTGAGTCACAATATGATCTTAATTTGGCTAGTTTGAATATCAGTATAGTAGATGTTCGTGTCAATCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGTAAGTTGGTTTTATTCCTATGAATATGATGTGGGGTTTCATCATTGGCTTCACTTTTTCTACTCTCATCTCATTGTTACTGTAGGCACCTCCCGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTAATCATCTCTCCTCACACACACACACACACAAACACATGCAACAGATACTAATCCATCATGTGTGTGAATTTAGGTTCAAGAAATTCAGCTGACAACATCACTCGATCAGGAAGGTATAAAAAGGGCATTGCAGCGTGTGTTGGAACGTGTCCCGTGA

mRNA sequence

GTTTATGCGTCACGCAAATAAGCGATGTGTTCCCATTCGGATTTGCAGCAGTTGGTGGCTTTCCATATCCGAATCCTTTCCCATTGCGCTCCTCCCCGCCATTTTCTTCCCTTCTCTCCACTCCCACAATCATGCCAATCTTTGTTGCAACCATCGCCTCTGTCTCTGCTCATTCCTTTCTCTCACTCCTTGCTTCCACTTCTGATGCTTCTTCAACCTCCTCCTCCTCCTCCTCCATTTTACCACTCAAACCCCCCTCTAAACGCTCTTCCATTTTCCCCTCCAGAGTCTCCCTCTCCGGAAAACCTGACCCCATTGCCGGAGTTCTAGACACCTCCCCGGAATCCGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGGCAGCGAGGGAATACCTTGATAGTGGATTTATCTATGAGGGTAGGATTGAAGGTTCAAATGCTGGAGGTTTACTTGTGCGATTTTATTCTCTTGTTGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTTGTAAAGAACCATACAAGAGTATTCAAGATATTGCAAAAAGCTTAATTGGTTCGCTTATATCAGTAAAGGTAATCCAAGCAGATGAGAAAAACAGGAAATTGATATTTTCAGAGAAGGAAGCTGCGCGGTCAAAGTTTTCTGGGCAAGTGGCTGTGGGGGATGTTTATGAAGGCAAAGTTGGATCTGTGGAGGATTATGGTGCTTTTGTACATCTACGTCTCTCTGATGGTCTTTATCATCTTACTGGGCTAGTACATGTATCAGAAGTTTCATGGGATCTAGTTCAGGATGTACGAGACATATTAAGTGAGGGTGACGAAGTGACAGTGAAGGTCATTAATGTTAACAAGAATAAGTCTCGGATCACATTGTCGATCAGACAACTCGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTAATACCGCAGGACAGTTCTGCTGAACCTGATTCTTTTGGACCTAAAGGCGACAGCGAAATAATACCCCTCCCTGGACTTGAAACAATAATTGAAGAGCTACTGCAGGAAGAGGGTATAGTAGATGTTCGTGTCAATCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGCACCTCCCGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTTCAAGAAATTCAGCTGACAACATCACTCGATCAGGAAGGTATAAAAAGGGCATTGCAGCGTGTGTTGGAACGTGTCCCGTGA

Coding sequence (CDS)

ATGCCAATCTTTGTTGCAACCATCGCCTCTGTCTCTGCTCATTCCTTTCTCTCACTCCTTGCTTCCACTTCTGATGCTTCTTCAACCTCCTCCTCCTCCTCCTCCATTTTACCACTCAAACCCCCCTCTAAACGCTCTTCCATTTTCCCCTCCAGAGTCTCCCTCTCCGGAAAACCTGACCCCATTGCCGGAGTTCTAGACACCTCCCCGGAATCCGTTCGACGTGCTCGGAGATCTGCTGATTGGAAGGCAGCGAGGGAATACCTTGATAGTGGATTTATCTATGAGGGTAGGATTGAAGGTTCAAATGCTGGAGGTTTACTTGTGCGATTTTATTCTCTTGTTGGGTTTCTTCCATTCCCTCAATTGAGCCCGTCTCATTCTTGTAAAGAACCATACAAGAGTATTCAAGATATTGCAAAAAGCTTAATTGGTTCGCTTATATCAGTAAAGGTAATCCAAGCAGATGAGAAAAACAGGAAATTGATATTTTCAGAGAAGGAAGCTGCGCGGTCAAAGTTTTCTGGGCAAGTGGCTGTGGGGGATGTTTATGAAGGCAAAGTTGGATCTGTGGAGGATTATGGTGCTTTTGTACATCTACGTCTCTCTGATGGTCTTTATCATCTTACTGGGCTAGTACATGTATCAGAAGTTTCATGGGATCTAGTTCAGGATGTACGAGACATATTAAGTGAGGGTGACGAAGTGACAGTGAAGGTCATTAATGTTAACAAGAATAAGTCTCGGATCACATTGTCGATCAGACAACTCGAGGAAGATCCACTTTTAGAAACATTGGACAAAGTAATACCGCAGGACAGTTCTGCTGAACCTGATTCTTTTGGACCTAAAGGCGACAGCGAAATAATACCCCTCCCTGGACTTGAAACAATAATTGAAGAGCTACTGCAGGAAGAGGGTATAGTAGATGTTCGTGTCAATCGACAAGGATTTGAGAAACGGGTGGTTTCACAAGACCTACAGCTTTGGCTATCAAATGCACCTCCCGTTGAAAAGAAGTTCACTCTCCTTGCTCGTGCCGGGAGGCAGGTTCAAGAAATTCAGCTGACAACATCACTCGATCAGGAAGGTATAAAAAGGGCATTGCAGCGTGTGTTGGAACGTGTCCCGTGA

Protein sequence

MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSSILPLKPPSKRSSIFPSRVSLSGKPDPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTSLDQEGIKRALQRVLERVP*

Homology

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BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.2e-20
Identity = 56/190 (29.47%), Postives = 102/190 (53.68%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S+R+ +    W+  R+      + +G+I G+N GG++     L GF+PF Q+S   S +E
Sbjct: 164 SLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEE 223

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSV 191
                      L+   I +K ++ DE+  +L+ S ++A       Q+ +G V  G V S+
Sbjct: 224 -----------LLEKEIPLKFVEVDEEQSRLVMSNRKAMADS-QAQLGIGSVVTGTVQSL 283

Query: 192 EDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRIT 251
           + YGAF+ +        + GL+HVS++S D V D+  +L  GD + V +++ ++ + R++
Sbjct: 284 KPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVS 335

Query: 252 LSIRQLEEDP 262
           LS ++LE  P
Sbjct: 344 LSTKKLEPTP 335

[Close]

BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot
Match: P74142 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1b PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.6e-19
Identity = 59/201 (29.35%), Postives = 109/201 (54.23%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S R+ +    W+   E  +SG   E  + G+N GG++     L GF+P   L        
Sbjct: 96  SRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMH------ 155

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSV 191
                +D   +L+G ++   +++A++ N KL+ +++   +++  G++A G++YEGKV  +
Sbjct: 156 -----KDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKI 215

Query: 192 EDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRIT 251
           + YG FV +        +TGL+HVS+VS   V  +  + + G  ++V V  +++ K+RI+
Sbjct: 216 QPYGVFVEIE------GVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRIS 275

Query: 252 LSIRQLEEDP--LLETLDKVI 271
           LS R LE  P  L+E  D+++
Sbjct: 276 LSTRILETYPGELVEKFDEMM 279

[Close]

BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-19
Identity = 56/190 (29.47%), Postives = 101/190 (53.16%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S+R  +    W+  R+      I + ++ G+N GGL+     L GF+PF Q+S   + +E
Sbjct: 167 SLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE 226

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSV 191
                      L+   I +K ++ DE+  KL+ S ++A       Q+ +G V  G V S+
Sbjct: 227 -----------LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSL 286

Query: 192 EDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRIT 251
           + YGAF+ +        + GL+HVS++S D V D+  +L  GD + V +++ ++++ R++
Sbjct: 287 KPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVS 338

Query: 252 LSIRQLEEDP 262
           LS ++LE  P
Sbjct: 347 LSTKKLEPTP 338

[Close]

BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-18
Identity = 55/190 (28.95%), Postives = 96/190 (50.53%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S+RR      W+  R+           +  +N GG LVR   L GF+P   +S +   KE
Sbjct: 99  SIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHIS-TRKAKE 158

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSV 191
                      L+G  + +K ++ DE   +L+ S + A   +   ++ VG+V  G V  +
Sbjct: 159 ----------DLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGI 218

Query: 192 EDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRIT 251
           + YGAF+ +        ++GL+H+SE+S D ++    + +  DEV V +I+++  + RI+
Sbjct: 219 KPYGAFIDIG------GVSGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRIS 271

Query: 252 LSIRQLEEDP 262
           LS +QLE +P
Sbjct: 279 LSTKQLEPEP 271

[Close]

BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot
Match: Q9JZ44 (30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=rpsA PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-17
Identity = 63/197 (31.98%), Postives = 97/197 (49.24%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S  +A+R+ADW A  E +++G I  G I G   GGL V   S+  FLP   +        
Sbjct: 86  SREKAKRAADWIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVD------- 145

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEA-------ARSKFSGQVAVGDVY 191
             + ++D      G  I  KVI+ D+K   ++ S +          R      +  G V 
Sbjct: 146 -VRPVKD-TSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVI 205

Query: 192 EGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVN 251
           +G V ++ DYGAFV L   DGL H+T      +++W  V+   ++L  G EV  KV+  +
Sbjct: 206 KGIVKNITDYGAFVDLGGIDGLLHIT------DLAWRRVKHPSEVLEVGQEVEAKVLKFD 265

Query: 252 KNKSRITLSIRQLEEDP 262
           + K R++L ++QL EDP
Sbjct: 266 QEKQRVSLGMKQLGEDP 267

[Close]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL
Match: A0A0A0KTX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012510 PE=4 SV=1)

HSP 1 Score: 700.7 bits (1807), Expect = 3.4e-198
Identity = 375/378 (99.21%), Postives = 376/378 (99.47%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS-ILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS ILPLK PSKRSSIFPSRVSLSGKP
Sbjct: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGKP 60

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP
Sbjct: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180
           FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA
Sbjct: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180

Query: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240
           VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK
Sbjct: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240

Query: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETII 300
           VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQ+SSAEPDSFGPKGDSEIIPLPGLETII
Sbjct: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGLETII 300

Query: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360
           EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS
Sbjct: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360

Query: 361 LDQEGIKRALQRVLERVP 378
           LDQEGIKRALQRVLERVP
Sbjct: 361 LDQEGIKRALQRVLERVP 378

[Close]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL
Match: A0A1S3BXL4 (30S ribosomal protein S1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494553 PE=4 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 2.1e-187
Identity = 355/378 (93.92%), Postives = 364/378 (96.30%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASST-SSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF+ATIASVS HSFLSLLASTSDASST SSSSSSILPLK PSKR SIFPSRVSLSGKP
Sbjct: 45  MPIFLATIASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFPSRVSLSGKP 104

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSL+GFLP
Sbjct: 105 DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLMGFLP 164

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180
           FPQLSPSHSCKEP KSIQDIAKSL GSLISVKVIQADE+N+KLIFSEKEA  SKFSGQV 
Sbjct: 165 FPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVIQADERNKKLIFSEKEATWSKFSGQVG 224

Query: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240
           VGDVYE KVGS+EDYGAFVHLR SDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK
Sbjct: 225 VGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 284

Query: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETII 300
           VINV+++KSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPK DSEIIPLPGL TII
Sbjct: 285 VINVDRDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDSEIIPLPGLGTII 344

Query: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360
           EEL QEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPP+EKKFTLLARAGRQVQEIQLTTS
Sbjct: 345 EELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPIEKKFTLLARAGRQVQEIQLTTS 404

Query: 361 LDQEGIKRALQRVLERVP 378
           LDQEGIKRALQRVLERVP
Sbjct: 405 LDQEGIKRALQRVLERVP 422

[Close]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL
Match: A0A5A7TNY0 (30S ribosomal protein S1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003280 PE=4 SV=1)

HSP 1 Score: 655.2 bits (1689), Expect = 1.6e-184
Identity = 355/381 (93.18%), Postives = 364/381 (95.54%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASST-SSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF+ATIASVS HSFLSLLASTSDASST SSSSSSILPLK PSKR SIFPSRVSLSGKP
Sbjct: 1   MPIFLATIASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFPSRVSLSGKP 60

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSL+GFLP
Sbjct: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLMGFLP 120

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVK-VIQADEKNRKLIFSEKEAARSKFSGQV 180
           FPQLSPSHSCKEP KSIQDIAKSL GSLISVK VIQADE+N+KLIFSEKEA  SKFSGQV
Sbjct: 121 FPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVVIQADERNKKLIFSEKEATWSKFSGQV 180

Query: 181 AVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV 240
            VGDVYE KVGS+EDYGAFVHLR SDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV
Sbjct: 181 GVGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV 240

Query: 241 KVINVNK--NKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLE 300
           KVINV++  +KSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPK DSEIIPLPGL 
Sbjct: 241 KVINVDRQVDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDSEIIPLPGLG 300

Query: 301 TIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 360
           TIIEEL QEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPP+EKKFTLLARAGRQVQEIQL
Sbjct: 301 TIIEELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPIEKKFTLLARAGRQVQEIQL 360

Query: 361 TTSLDQEGIKRALQRVLERVP 378
           TTSLDQEGIKRALQRVLERVP
Sbjct: 361 TTSLDQEGIKRALQRVLERVP 381

[Close]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL
Match: A0A6J1IUF3 (uncharacterized protein LOC111479406 OS=Cucurbita maxima OX=3661 GN=LOC111479406 PE=4 SV=1)

HSP 1 Score: 602.8 bits (1553), Expect = 9.7e-169
Identity = 325/381 (85.30%), Postives = 347/381 (91.08%), Query Frame = 0


Query: 1   MPIFVA-TIASVSAHSFLSLLASTSDASSTSSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF A T+ S+SAHSFLSLLAST   +S S SSS +L  K PSKR S F +RVSLSGKP
Sbjct: 1   MPIFAATTLGSLSAHSFLSLLASTD--ASHSLSSSFVLTHKSPSKRPSNFAARVSLSGKP 60

Query: 61  DPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVG 120
           +PIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLVG
Sbjct: 61  EPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVG 120

Query: 121 FLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSG 180
           FLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS 
Sbjct: 121 FLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSE 180

Query: 181 QVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEV 240
           QV VGDVYE +VGSVEDYGAFVHLR SDG YHLTGLVH+SEVSWDLVQDVRDILSEGDEV
Sbjct: 181 QVGVGDVYEARVGSVEDYGAFVHLRFSDGFYHLTGLVHISEVSWDLVQDVRDILSEGDEV 240

Query: 241 TVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLE 300
            VKV++V+++KSRITLSI+QLEEDPLLETLDKVIPQD SAEPDSFGPK DSEIIPLPGL+
Sbjct: 241 RVKVLDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLD 300

Query: 301 TIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 360
           TI EELLQEEGI DV +NRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL
Sbjct: 301 TIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 360

Query: 361 TTSLDQEGIKRALQRVLERVP 378
           TTSLDQEGIKRALQRVLERVP
Sbjct: 361 TTSLDQEGIKRALQRVLERVP 379

[Close]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL
Match: A0A6J1GVD7 (LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 OS=Cucurbita moschata OX=3662 GN=LOC111457527 PE=4 SV=1)

HSP 1 Score: 597.4 bits (1539), Expect = 4.1e-167
Identity = 322/381 (84.51%), Postives = 346/381 (90.81%), Query Frame = 0


Query: 1   MPIFVA-TIASVSAHSFLSLLASTSDASSTSSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF A T+ S+SAHSFLSL AS    +S S S+S +L  K PSKR S F +RVSLSGKP
Sbjct: 47  MPIFAATTLGSLSAHSFLSLSASAD--ASNSLSTSFLLTHKSPSKRPSNFAARVSLSGKP 106

Query: 61  DPIAGVLD---TSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVG 120
           +PIAGVL+   +SPESVRRARRSADWK AREYLDSGFI++GRIEGSNAGGLLVRFYSLVG
Sbjct: 107 EPIAGVLESSPSSPESVRRARRSADWKTAREYLDSGFIFKGRIEGSNAGGLLVRFYSLVG 166

Query: 121 FLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSG 180
           FLPFP LSP+HSCKEPYKSIQDIAKSLIGSLI VKVIQADEKN+ LIFSEKEAA SKFS 
Sbjct: 167 FLPFPLLSPAHSCKEPYKSIQDIAKSLIGSLIPVKVIQADEKNKNLIFSEKEAAWSKFSE 226

Query: 181 QVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEV 240
           +V VGDVYE +VGS+EDYGAFVHLR SDGLYHLTGLVH+SEVSWDLVQDVRDILSEGDEV
Sbjct: 227 KVGVGDVYEARVGSLEDYGAFVHLRFSDGLYHLTGLVHISEVSWDLVQDVRDILSEGDEV 286

Query: 241 TVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLE 300
            VKVI+V+++KSRITLSI+QLEEDPLLETLDKVIPQD SAEPDSFGPK DSEIIPLPGL+
Sbjct: 287 RVKVIDVDRDKSRITLSIKQLEEDPLLETLDKVIPQDDSAEPDSFGPKSDSEIIPLPGLD 346

Query: 301 TIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 360
           TI EELLQEEGI DV +NRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL
Sbjct: 347 TIFEELLQEEGIEDVHINRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 406

Query: 361 TTSLDQEGIKRALQRVLERVP 378
           TTSLDQEGIKRALQRVLERVP
Sbjct: 407 TTSLDQEGIKRALQRVLERVP 425

[Close]

BLAST of CSPI04G03160 vs. NCBI nr
Match: XP_004152109.1 (uncharacterized protein LOC101213559 isoform X2 [Cucumis sativus] >KGN53055.1 hypothetical protein Csa_014442 [Cucumis sativus])

HSP 1 Score: 700.7 bits (1807), Expect = 7.1e-198
Identity = 375/378 (99.21%), Postives = 376/378 (99.47%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS-ILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS ILPLK PSKRSSIFPSRVSLSGKP
Sbjct: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGKP 60

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP
Sbjct: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180
           FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA
Sbjct: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180

Query: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240
           VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK
Sbjct: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240

Query: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETII 300
           VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQ+SSAEPDSFGPKGDSEIIPLPGLETII
Sbjct: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGLETII 300

Query: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360
           EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS
Sbjct: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360

Query: 361 LDQEGIKRALQRVLERVP 378
           LDQEGIKRALQRVLERVP
Sbjct: 361 LDQEGIKRALQRVLERVP 378

[Close]

BLAST of CSPI04G03160 vs. NCBI nr
Match: XP_011653045.1 (uncharacterized protein LOC101213559 isoform X1 [Cucumis sativus])

HSP 1 Score: 694.9 bits (1792), Expect = 3.9e-196
Identity = 375/382 (98.17%), Postives = 376/382 (98.43%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS-ILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSS ILPLK PSKRSSIFPSRVSLSGKP
Sbjct: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSSFILPLKSPSKRSSIFPSRVSLSGKP 60

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP
Sbjct: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180
           FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA
Sbjct: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180

Query: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240
           VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK
Sbjct: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240

Query: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETII 300
           VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQ+SSAEPDSFGPKGDSEIIPLPGLETII
Sbjct: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQESSAEPDSFGPKGDSEIIPLPGLETII 300

Query: 301 EELLQEEG----IVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQ 360
           EELLQEEG    IVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQ
Sbjct: 301 EELLQEEGLNISIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQ 360

Query: 361 LTTSLDQEGIKRALQRVLERVP 378
           LTTSLDQEGIKRALQRVLERVP
Sbjct: 361 LTTSLDQEGIKRALQRVLERVP 382

[Close]

BLAST of CSPI04G03160 vs. NCBI nr
Match: XP_008454000.1 (PREDICTED: 30S ribosomal protein S1 isoform X1 [Cucumis melo])

HSP 1 Score: 664.8 bits (1714), Expect = 4.3e-187
Identity = 355/378 (93.92%), Postives = 364/378 (96.30%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASST-SSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF+ATIASVS HSFLSLLASTSDASST SSSSSSILPLK PSKR SIFPSRVSLSGKP
Sbjct: 45  MPIFLATIASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFPSRVSLSGKP 104

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSL+GFLP
Sbjct: 105 DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLMGFLP 164

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVA 180
           FPQLSPSHSCKEP KSIQDIAKSL GSLISVKVIQADE+N+KLIFSEKEA  SKFSGQV 
Sbjct: 165 FPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVIQADERNKKLIFSEKEATWSKFSGQVG 224

Query: 181 VGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 240
           VGDVYE KVGS+EDYGAFVHLR SDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK
Sbjct: 225 VGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVK 284

Query: 241 VINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLETII 300
           VINV+++KSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPK DSEIIPLPGL TII
Sbjct: 285 VINVDRDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDSEIIPLPGLGTII 344

Query: 301 EELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTS 360
           EEL QEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPP+EKKFTLLARAGRQVQEIQLTTS
Sbjct: 345 EELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPIEKKFTLLARAGRQVQEIQLTTS 404

Query: 361 LDQEGIKRALQRVLERVP 378
           LDQEGIKRALQRVLERVP
Sbjct: 405 LDQEGIKRALQRVLERVP 422

[Close]

BLAST of CSPI04G03160 vs. NCBI nr
Match: KAA0044578.1 (30S ribosomal protein S1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 655.2 bits (1689), Expect = 3.4e-184
Identity = 355/381 (93.18%), Postives = 364/381 (95.54%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASST-SSSSSSILPLKPPSKRSSIFPSRVSLSGKP 60
           MPIF+ATIASVS HSFLSLLASTSDASST SSSSSSILPLK PSKR SIFPSRVSLSGKP
Sbjct: 1   MPIFLATIASVSTHSFLSLLASTSDASSTSSSSSSSILPLKSPSKRPSIFPSRVSLSGKP 60

Query: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLP 120
           DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSL+GFLP
Sbjct: 61  DPIAGVLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLMGFLP 120

Query: 121 FPQLSPSHSCKEPYKSIQDIAKSLIGSLISVK-VIQADEKNRKLIFSEKEAARSKFSGQV 180
           FPQLSPSHSCKEP KSIQDIAKSL GSLISVK VIQADE+N+KLIFSEKEA  SKFSGQV
Sbjct: 121 FPQLSPSHSCKEPNKSIQDIAKSLTGSLISVKVVIQADERNKKLIFSEKEATWSKFSGQV 180

Query: 181 AVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV 240
            VGDVYE KVGS+EDYGAFVHLR SDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV
Sbjct: 181 GVGDVYEAKVGSLEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTV 240

Query: 241 KVINVNK--NKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLE 300
           KVINV++  +KSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPK DSEIIPLPGL 
Sbjct: 241 KVINVDRQVDKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKSDSEIIPLPGLG 300

Query: 301 TIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQL 360
           TIIEEL QEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPP+EKKFTLLARAGRQVQEIQL
Sbjct: 301 TIIEELQQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPIEKKFTLLARAGRQVQEIQL 360

Query: 361 TTSLDQEGIKRALQRVLERVP 378
           TTSLDQEGIKRALQRVLERVP
Sbjct: 361 TTSLDQEGIKRALQRVLERVP 381

[Close]

BLAST of CSPI04G03160 vs. NCBI nr
Match: XP_038897871.1 (30S ribosomal protein S1 homolog B [Benincasa hispida])

HSP 1 Score: 633.6 bits (1633), Expect = 1.1e-177
Identity = 338/380 (88.95%), Postives = 356/380 (93.68%), Query Frame = 0


Query: 1   MPIFVATIASVSAHSFLSLLASTSDASSTSSSSSSILPLKPPSKRSSIFPSRVSLSGKPD 60
           MPIF AT+ SV AHSFLSLLAST+D    +SS+S ILP K PSKR S FP+RVSLSGKPD
Sbjct: 1   MPIFAATLGSVFAHSFLSLLASTTDG---ASSTSFILPQKSPSKRPSNFPARVSLSGKPD 60

Query: 61  PIAGVLDT---SPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGF 120
           PIAGVLDT   SPES+RRARRSADWKAAREYLD+GFIYEGRIEGSNAGGLLVRFYSL+GF
Sbjct: 61  PIAGVLDTSPSSPESLRRARRSADWKAAREYLDNGFIYEGRIEGSNAGGLLVRFYSLMGF 120

Query: 121 LPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQ 180
           LPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADE+N+KLIFSEKEAA SKFS Q
Sbjct: 121 LPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADERNKKLIFSEKEAAWSKFSEQ 180

Query: 181 VAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVT 240
           V VGDVYE +VGSVEDYGAFVHLR SDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVT
Sbjct: 181 VGVGDVYEARVGSVEDYGAFVHLRFSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVT 240

Query: 241 VKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPLPGLET 300
           VKVINV+++KSRITLSI+QLEEDPLLETLDKVIPQ  SAEPDSFGPK DSEI+PLPGLET
Sbjct: 241 VKVINVDRDKSRITLSIKQLEEDPLLETLDKVIPQGGSAEPDSFGPKSDSEIMPLPGLET 300

Query: 301 IIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLT 360
           IIEELLQE+GIVD+ VNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLT
Sbjct: 301 IIEELLQEDGIVDICVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLT 360

Query: 361 TSLDQEGIKRALQRVLERVP 378
           TSLDQEGIKRALQRVLERVP
Sbjct: 361 TSLDQEGIKRALQRVLERVP 377

[Close]

BLAST of CSPI04G03160 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 409.8 bits (1052), Expect = 2.3e-114
Identity = 233/386 (60.36%), Postives = 278/386 (72.02%), Query Frame = 0


Query: 7   TIASVSAHSFLSLLAST----------SDASSTSSSSSSILPLKPPSKRSSIFPSRVSLS 66
           T+ SVS  S L    ST          S +SS+S+ +S +  +K  S  ++    R S  
Sbjct: 9   TLGSVSFASHLFDQQSTFLSCPLRLLPSSSSSSSNRNSLVCIVKSFSSSATADTDRNSDQ 68

Query: 67  GKPDPIAG-----VLDTSPESVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRF 126
                +       + DTS E+   A   +DWK A+ Y  SG  +EG ++G N GGLL+RF
Sbjct: 69  SASSSVLSASNSLLRDTSDEA--SAAGPSDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRF 128

Query: 127 YSLVGFLPFPQLSPSHSCKEPYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAAR 186
           +SLVGFLP+PQLSPS SCKEP KSI +IAK+L+GS + VKV+QADE+NRKLI SEK A  
Sbjct: 129 HSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALW 188

Query: 187 SKFSGQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILS 246
            K+S  V VGDV+ G+VGSVEDYGAF+HLR  DGLYHLTGLVHVSEVSWD VQDVRD+L 
Sbjct: 189 PKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLR 248

Query: 247 EGDEVTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIP 306
           +GDEV V V N++K KSRITLSI+QLE+DPLLETLDKVI +DSS    S        I P
Sbjct: 249 DGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEP 308

Query: 307 LPGLETIIEELLQEEGIVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQV 366
           LPGLETI+EELL+E+GI  V++NRQGFEKRVVSQDLQLWLSN PP + KF LLARAGRQV
Sbjct: 309 LPGLETILEELLKEDGIEAVKINRQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQV 368

Query: 367 QEIQLTTSLDQEGIKRALQRVLERVP 378
           QEI LTTSL+Q GIK+ALQ VLERVP
Sbjct: 369 QEIHLTTSLEQGGIKKALQHVLERVP 392

[Close]

BLAST of CSPI04G03160 vs. TAIR 10
Match: AT1G12800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-20
Identity = 79/249 (31.73%), Postives = 123/249 (49.40%), Query Frame = 0


Query: 137 QDIAKSLIGSLISVKVIQADEKNRKLIFS------EKEAARSK-FSGQVAVGDVYEGKVG 196
           Q    S +G  I V V+ A+  +RKLIFS      E+E  + +    ++ VGDV +  + 
Sbjct: 531 QKFLSSFVGQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIK 590

Query: 197 SVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSR 256
            +  +G F  L        +  LVH SEVSWD   D       G  V  KV  ++    R
Sbjct: 591 KITYFGIFCELE------GVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALER 650

Query: 257 ITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFGPKGDSEIIPL--PGLETIIEELLQEEG 316
           I LS++++  DPL E L+ V+  D+    D  G +  +  +    P +E++I+EL   EG
Sbjct: 651 IFLSLKEITPDPLTEALESVVGGDN----DQLGGRLQAAELDAEWPDVESLIKELEMVEG 710

Query: 317 IVDVRVNRQGFEKRVVSQDLQLWLSNAPPVEKKFTLLARAGRQVQEIQLTTSLDQEGIKR 376
           I  V  +R  F    ++   Q+++  AP  E ++ LLARAG +VQE+ +  SL +E +K 
Sbjct: 711 IQSVSKSR-FFLSPGLAPTFQVYM--APMFENQYKLLARAGNRVQELIVEASLSKEEMKS 766

[Close]

BLAST of CSPI04G03160 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 97.1 bits (240), Expect = 3.3e-20
Identity = 56/190 (29.47%), Postives = 101/190 (53.16%), Query Frame = 0


Query: 72  SVRRARRSADWKAAREYLDSGFIYEGRIEGSNAGGLLVRFYSLVGFLPFPQLSPSHSCKE 131
           S+R  +    W+  R+      I + ++ G+N GGL+     L GF+PF Q+S   + +E
Sbjct: 167 SLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE 226

Query: 132 PYKSIQDIAKSLIGSLISVKVIQADEKNRKLIFSEKEAARSKFSGQVAVGDVYEGKVGSV 191
                      L+   I +K ++ DE+  KL+ S ++A       Q+ +G V  G V S+
Sbjct: 227 -----------LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSL 286

Query: 192 EDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQDVRDILSEGDEVTVKVINVNKNKSRIT 251
           + YGAF+ +        + GL+HVS++S D V D+  +L  GD + V +++ ++++ R++
Sbjct: 287 KPYGAFIDIG------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVS 338

Query: 252 LSIRQLEEDP 262
           LS ++LE  P
Sbjct: 347 LSTKKLEPTP 338

[Close]

BLAST of CSPI04G03160 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-07
Identity = 41/160 (25.62%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 165 SEKEAARSKFSGQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQ 224
           SE  A +++   ++  G  + GKV +++ +GAFV     D      GLVHVS++S + V+
Sbjct: 123 SEMPAVKNE---ELVPGATFTGKVRAIQPFGAFV-----DFGAFTDGLVHVSQLSDNFVK 182

Query: 225 DVRDILSEGDEVTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFG-- 284
           DV  +++ G EV V+++  +    RI+L++R+ ++ P  ++     P+       S G  
Sbjct: 183 DVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQSGGSDKPRSGGKRDGSKGGG 242

Query: 285 -PKGD---SEIIPLPGLETIIEELLQEEGIVDVRVNRQGF 319
             KG+   S+      L+ +++ L +    + +    +GF
Sbjct: 243 QRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGF 274

[Close]

BLAST of CSPI04G03160 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-07
Identity = 41/160 (25.62%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 165 SEKEAARSKFSGQVAVGDVYEGKVGSVEDYGAFVHLRLSDGLYHLTGLVHVSEVSWDLVQ 224
           SE  A +++   ++  G  + GKV +++ +GAFV     D      GLVHVS++S + V+
Sbjct: 123 SEMPAVKNE---ELVPGATFTGKVRAIQPFGAFV-----DFGAFTDGLVHVSQLSDNFVK 182

Query: 225 DVRDILSEGDEVTVKVINVNKNKSRITLSIRQLEEDPLLETLDKVIPQDSSAEPDSFG-- 284
           DV  +++ G EV V+++  +    RI+L++R+ ++ P  ++     P+       S G  
Sbjct: 183 DVSSVVTIGQEVKVRLVEADIESKRISLTMRENDDPPKRQSGGSDKPRSGGKRDGSKGGG 242

Query: 285 -PKGD---SEIIPLPGLETIIEELLQEEGIVDVRVNRQGF 319
             KG+   S+      L+ +++ L +    + +    +GF
Sbjct: 243 QRKGEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGF 274

The following BLAST results are available for this feature:

BLAST of CSPI04G03160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29344	7.2e-20	29.47	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
P74142	3.6e-19	29.35	30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
Q93VC7	4.7e-19	29.47	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]
P46228	4.0e-18	28.95	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
Q9JZ44	1.5e-17	31.98	30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B (strain MC58) OX=...	[more]

BLAST of CSPI04G03160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTX2	3.4e-198	99.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012510 PE=4 SV=1	[more]
A0A1S3BXL4	2.1e-187	93.92	30S ribosomal protein S1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494553 PE=4...	[more]
A0A5A7TNY0	1.6e-184	93.18	30S ribosomal protein S1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1IUF3	9.7e-169	85.30	uncharacterized protein LOC111479406 OS=Cucurbita maxima OX=3661 GN=LOC111479406...	[more]
A0A6J1GVD7	4.1e-167	84.51	LOW QUALITY PROTEIN: uncharacterized protein LOC111457527 OS=Cucurbita moschata ...	[more]

BLAST of CSPI04G03160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152109.1	7.1e-198	99.21	uncharacterized protein LOC101213559 isoform X2 [Cucumis sativus] >KGN53055.1 hy...	[more]
XP_011653045.1	3.9e-196	98.17	uncharacterized protein LOC101213559 isoform X1 [Cucumis sativus]	[more]
XP_008454000.1	4.3e-187	93.92	PREDICTED: 30S ribosomal protein S1 isoform X1 [Cucumis melo]	[more]
KAA0044578.1	3.4e-184	93.18	30S ribosomal protein S1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038897871.1	1.1e-177	88.95	30S ribosomal protein S1 homolog B [Benincasa hispida]	[more]

BLAST of CSPI04G03160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23700.1	2.3e-114	60.36	Nucleic acid-binding proteins superfamily	[more]
AT1G12800.1	2.5e-20	31.73	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G30510.1	3.3e-20	29.47	ribosomal protein S1	[more]
AT4G29060.1	5.5e-07	25.63	elongation factor Ts family protein	[more]
AT4G29060.2	5.5e-07	25.63	elongation factor Ts family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..167 e-value: 2.5E-5 score: 33.7 coord: 179..255 e-value: 1.3E-20 score: 84.5
None	No IPR available	GENE3D	2.40.50.140		coord: 177..263 e-value: 2.2E-25 score: 90.3
None	No IPR available	GENE3D	2.40.50.140		coord: 82..176 e-value: 1.1E-10 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..55
None	No IPR available	PANTHER	PTHR47559	OS03G0844900 PROTEIN	coord: 6..377
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 178..255 e-value: 2.0E-18 score: 66.5
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 92..167 score: 13.024073
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 181..255 score: 21.191065
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 90..167
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 179..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G03160.1	CSPI04G03160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0000481	maturation of 5S rRNA
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0034337	RNA folding
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding