CSPI04G03080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G03080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein of unknown function (DUF 3339)
Location	Chr4: 1904001 .. 1905504 (-)
RNA-Seq Expression	CSPI04G03080
Synteny	CSPI04G03080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTACACATACGCTCTGTTTCTTCTGTTTTCGACTCCTCTGTCTGTATAATCTCTCCGGATGGATCTTTGTTTTCTATTAATTTGTCGGCCGCGTAGTAGAGTGAAGCTAAGCACATATATACATATTATTATGTTGAAATACATGTATATTTTTAACTTTAGGTTTTGAAATTTGTTGAAGAATGATGATGATGATGATGATGATGATGATCTCATCATCTCATGAATTGGAATTTGTTAAATTTGTGTTATGGAGTTGTTGTGTGATTTAATAATTAGAGTAATGGATGAGAAATTTTGAAAGTGAAGTGATAGTAAGTAATATTTATATAGGTATATTATTATTATTTAATGTGGGTAAGGTTTAGGTTATTATTTATTATACATACATTTATTACTACTTTAATGTGGGTGCAAATATTGTCTAATGTCTCATTCATTCTATTTAATTTCTGCTTTATTTACATACGCATCTCCTTACTTCAAAATTTTTTAGATCTTTTTCAAAAAATAGAAAATACCATAAAAATTTATTAAAAATATTTAATACATACTTATTCAAGTTTATTAAATTATTGCAATTGTTACTTTCTTTTTTTAACTTTTAGGAATTCAAAGTAATTTAATATAAATAATAAACCTATTAATTAGTTTAAAAATTAAAATATTTATAAAATATAACCAAATTTTATATGTATCGATATATTGATATGTTATACATTACATAATTTATAATGTAGTAAACTTTGATGATTTAATTTATAATGTATCTCTATTCATAGTTCATACTCAATGGTCGATCTCACTGCTAGTTCGAAGGATTAGGCTATTAATACATAGGAAATCAAGAACTAAAATTGTTAAACTCGAGAAAAAAAGAGTGAATTGATACTTTAATGAAATAAATTGAAGCGGATTGGACAATCATATTAATAGTTTATTCTTATTATTAATTATTGTAAGTATGGTTGAATGATATAATATTTAATTTGTTTTTACCTAATGAGCTTAAAGCTTTCAGGTCAATTGGTGATTTAAAGATGGTATCAAGAGAAGGTTCATTTAGGAAGTCTTGTGTTCAAATTGATACATTATTTGTTTTCCTTCTCAATCTAGACAATTGCAAATATATATTTTCTTTTTAATCAATCGAGACAATTGTATAGATAACAATATTTTTAAATAATTGCAAATATAGCAAAGTTTGTAAT

mRNA sequence

AAAGAAAAGAAAAACGAAGAGAAAGCAAGGAAGAAAACAATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGATCATCCCAAAATCAAACTCAGATTCTTCCTCTATTTCCAATTTCCAGGTCAATTGGTGATTTAAAGATGGTATCAAGAGAAGGTTCATTTAGGAAGTCTTGTGTTCAAATTGATACATTATTTGTTTTCCTTCTCAATCTAGACAATTGCAAATATATATTTTCTTTTTAATCAATCGAGACAATTGTATAGATAACAATATTTTTAAATAATTGCAAATATAGCAAAGTTTGTAAT

Coding sequence (CDS)

ATGGCGGATTGGGGCCCAGTTTTCGTGGCTGTGGTTCTCTTCCTCCTTCTATCCCCCGGCCTTCTCTTCCAAATCCCCGGCCACAACAGCTTCGTTCAGTTCGGCAACTTCCAAACCAGCGGCGCCTCCATTTTCATCCATTCCCTCATCTTCTTTGCCCTAATTTCCCTCTTCACCTTCGTCATTCAACTTCACATCTACATCTGA

Protein sequence

MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTFVIQLHIYI*

Homology

[Close]

BLAST of CSPI04G03080 vs. ExPASy TrEMBL
Match: A0A1S3BX44 (uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGH+SF+QFGNFQTSG+SIFIHSLIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTF 60

Query: 61 VIQLHIYI 69
          VIQLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. ExPASy TrEMBL
Match: A0A6J1I7P7 (uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ F+QFGNFQTSGASIFIHSLIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VIQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of CSPI04G03080 vs. ExPASy TrEMBL
Match: A0A6J1EXQ9 (uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC111439163 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.1e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ F+QFGNFQTSGASIFIHSLIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VIQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of CSPI04G03080 vs. ExPASy TrEMBL
Match: A0A6J1CVS1 (uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014687 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ FV+FGNF TSGASIFIHSLIFFAL+ LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 VIQLHIYI 69
          V+QLHIYI
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. ExPASy TrEMBL
Match: A0A6A1UN09 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004505 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.7e-19
Identity = 47/68 (69.12%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          M+DWGPVFVAVVLF+LL+PGLLFQ+PGH+ +V+FGNFQTSGASI IHSL++F LI +F  
Sbjct: 1  MSDWGPVFVAVVLFVLLTPGLLFQVPGHHGYVEFGNFQTSGASILIHSLLYFGLICIFFL 60

Query: 61 VIQLHIYI 69
           I++H+Y+
Sbjct: 61 AIKVHLYL 68

[Close]

BLAST of CSPI04G03080 vs. NCBI nr
Match: XP_004152115.1 (uncharacterized protein LOC101215007 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60

Query: 61 VIQLHIYI 69
          VIQLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. NCBI nr
Match: XP_008454011.1 (PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQIPGH+SF+QFGNFQTSG+SIFIHSLIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHHSFIQFGNFQTSGSSIFIHSLIFFALISLFTF 60

Query: 61 VIQLHIYI 69
          VIQLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. NCBI nr
Match: XP_038900916.1 (uncharacterized protein LOC120087962 [Benincasa hispida])

HSP 1 Score: 127.5 bits (319), Expect = 4.5e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ FVQFGNFQTSGASIFIHSLIFFALISLFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHRFVQFGNFQTSGASIFIHSLIFFALISLFTF 60

Query: 61 VIQLHIYI 69
          VIQLHIYI
Sbjct: 61 VIQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. NCBI nr
Match: XP_022932694.1 (uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 uncharacterized protein LOC111470767 [Cucurbita maxima] >XP_023539087.1 uncharacterized protein LOC111799839 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-25
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ F+QFGNFQTSGASIFIHSLIFFALI LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHHFIQFGNFQTSGASIFIHSLIFFALICLFTF 60

Query: 61 VIQLHIYI 69
          V+QLHIY+
Sbjct: 61 VLQLHIYL 68

[Close]

BLAST of CSPI04G03080 vs. NCBI nr
Match: XP_022145182.1 (uncharacterized protein LOC111014687 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 2.5e-24
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPVFVAVVLFLLLSPGLLFQ+PGH+ FV+FGNF TSGASIFIHSLIFFAL+ LFTF
Sbjct: 1  MADWGPVFVAVVLFLLLSPGLLFQVPGHHQFVEFGNFHTSGASIFIHSLIFFALLCLFTF 60

Query: 61 VIQLHIYI 69
          V+QLHIYI
Sbjct: 61 VVQLHIYI 68

[Close]

BLAST of CSPI04G03080 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPV VAV+LF+LL+PGLLFQIP     V+FGN QTSGASI +H++IFF LI++FT 
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 VIQLHIY 68
           I+LHIY
Sbjct: 61 AIRLHIY 67

[Close]

BLAST of CSPI04G03080 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 93.6 bits (231), Expect = 6.7e-20
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          MADWGPV +AV+LF++LSPGLLFQIP     V+FGN QTSGASI +H++IFF LI++FT 
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 VIQLHIY 68
           I +HIY
Sbjct: 61 AINVHIY 67

[Close]

BLAST of CSPI04G03080 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-19
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          M+DWGPV V V+LF++L+PGLLFQ+PG   +V+FGNFQTS  S+ +HSL++F+L+ +F  
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 VIQLHIYI 69
           +++HIYI
Sbjct: 61 ALKIHIYI 68

[Close]

BLAST of CSPI04G03080 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.3 bits (207), Expect = 4.1e-17
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTF 60
          M DWGPVFVAV LF+LL+PGLL Q+PG    V+FG FQTSG S+ +H+LI+F L+ +   
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 VIQLHI 67
           +Q+HI
Sbjct: 61 ALQIHI 66

[Close]

BLAST of CSPI04G03080 vs. TAIR 10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-16
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 3  DWGPVFVAVVLFLLLSPGLLFQIPGHNSFVQFGNFQTSGASIFIHSLIFFALISLFTFVI 62
          DWGPV ++V+ F++LSPG+LFQ+PG +  V+FG FQTSG SI IH+L+FFA I++    +
Sbjct: 4  DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63

Query: 63 QLHIY 68
           +HIY
Sbjct: 64 HIHIY 68

The following BLAST results are available for this feature:

BLAST of CSPI04G03080 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G03080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BX44	1.3e-26	95.59	uncharacterized protein LOC103494560 OS=Cucumis melo OX=3656 GN=LOC103494560 PE=...	[more]
A0A6J1I7P7	3.1e-25	89.71	uncharacterized protein LOC111470767 OS=Cucurbita maxima OX=3661 GN=LOC111470767...	[more]
A0A6J1EXQ9	3.1e-25	89.71	uncharacterized protein LOC111439163 OS=Cucurbita moschata OX=3662 GN=LOC1114391...	[more]
A0A6J1CVS1	1.2e-24	88.24	uncharacterized protein LOC111014687 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6A1UN09	5.7e-19	69.12	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004505 PE=4 SV=1	[more]

BLAST of CSPI04G03080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152115.1	2.4e-27	100.00	uncharacterized protein LOC101215007 [Cucumis sativus]	[more]
XP_008454011.1	2.6e-26	95.59	PREDICTED: uncharacterized protein LOC103494560 [Cucumis melo]	[more]
XP_038900916.1	4.5e-26	95.59	uncharacterized protein LOC120087962 [Benincasa hispida]	[more]
XP_022932694.1	6.5e-25	89.71	uncharacterized protein LOC111439163 [Cucurbita moschata] >XP_022972135.1 unchar...	[more]
XP_022145182.1	2.5e-24	88.24	uncharacterized protein LOC111014687 [Momordica charantia]	[more]

BLAST of CSPI04G03080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	1.4e-20	68.66	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	6.7e-20	65.67	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	5.7e-19	55.88	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	4.1e-17	57.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01950.1	4.5e-16	55.38	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 1.0E-31 score: 108.9
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33128:SF55	PROTEIN, PUTATIVE (DUF 3339)-RELATED	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G03080.1	CSPI04G03080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane