CSPI04G01110 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G01110
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein of unknown function (DUF3511)
Location	Chr4: 614451 .. 615034 (+)
RNA-Seq Expression	CSPI04G01110
Synteny	CSPI04G01110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTCTTAAATAGATGTAAACACACAACCAAAAATGACGAACAGATAAAATAATCTTCAATTCCTTTTTTTTCCTTTTGAAAATAATAATAATAATACACAAAAGGAGACAGAGAGTTCAGTATCCGTACGACAAATAGATCGGGAAAACCAAACGTTGTAAACCTTCCAGCTCATTCTCGATTTCAGAAACTTTTTCAGATTACCCCTTTCCCAAACTTACCCCTCTCCCCCATTTCTACACTCCAAAAAACTAATTAAAATCCTCCCCTCTCTCTCTCTCTTCCCTTTTTCCACTTCCATTTCAAATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCTCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCATGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

mRNA sequence

GCATTCTTAAATAGATGTAAACACACAACCAAAAATGACGAACAGATAAAATAATCTTCAATTCCTTTTTTTTCCTTTTGAAAATAATAATAATAATACACAAAAGGAGACAGAGAGTTCAGTATCCGTACGACAAATAGATCGGGAAAACCAAACGTTGTAAACCTTCCAGCTCATTCTCGATTTCAGAAACTTTTTCAGATTACCCCTTTCCCAAACTTACCCCTCTCCCCCATTTCTACACTCCAAAAAACTAATTAAAATCCTCCCCTCTCTCTCTCTCTTCCCTTTTTCCACTTCCATTTCAAATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCTCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCATGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

Coding sequence (CDS)

ATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCTCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCATGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

Protein sequence

MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF*

Homology

[Close]

BLAST of CSPI04G01110 vs. ExPASy TrEMBL
Match: A0A0A0KV97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002560 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKY 60
          MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEA RRKRIAKY
Sbjct: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60

Query: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
          KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF
Sbjct: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91

[Close]

BLAST of CSPI04G01110 vs. ExPASy TrEMBL
Match: A0A5A7TMP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001340 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-42
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 2  SARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKYK 61
          SARRIEIVSGKHNGAR APQIYRSPNLDTNGNRVGSAA GKPWGFADPEA RRKRIAKYK
Sbjct: 6  SARRIEIVSGKHNGARPAPQIYRSPNLDTNGNRVGSAAAGKPWGFADPEAKRRKRIAKYK 65

Query: 62 VYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
          VYTVEGRVKDSLRKGLRWIKN+CSRIVHGF
Sbjct: 66 VYTVEGRVKDSLRKGLRWIKNRCSRIVHGF 95

[Close]

BLAST of CSPI04G01110 vs. ExPASy TrEMBL
Match: A0A6J1KD11 (uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSA-ATGKPWGFADPEAMRRKRIAKYKV 63
           RR+EIVSGK  G   + QIY SPNL T  NRVGSA A  KPW F DPE  RRKRIAKYKV
Sbjct: 12  RRVEIVSGKRYGGDGSCQIYGSPNLATTANRVGSASAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CSPI04G01110 vs. ExPASy TrEMBL
Match: A0A6J1GAV9 (uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC111452504 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVG-SAATGKPWGFADPEAMRRKRIAKYKV 63
           R +EIVSGK  G   + QIY SPNL T  NRVG +AA  KPW F DPE  RRKRIAKYKV
Sbjct: 12  RSVEIVSGKRYGGDGSCQIYGSPNLATTTNRVGPAAAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CSPI04G01110 vs. ExPASy TrEMBL
Match: A0A1R3H0Q6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22163 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.7e-22
Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIY----RSPNLDTNGNRV--GSAATGKPWGFADPEAMRRKRI 63
           RR+EIVSGK + +    QI+    RSP+L    NR    S  T KPWGF DPE  R+KRI
Sbjct: 15  RRMEIVSGK-SSSIGGNQIFSGRSRSPDLQQAQNRTTRASQGTSKPWGFTDPEMKRKKRI 74

Query: 64  AKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           AKYKVYTVEG+VK SLRKGLRWIKNKCS+IVHG+
Sbjct: 75  AKYKVYTVEGKVKSSLRKGLRWIKNKCSQIVHGY 107

[Close]

BLAST of CSPI04G01110 vs. NCBI nr
Match: KGN52839.1 (hypothetical protein Csa_014389 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 4.9e-44
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKY 60
          MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEA RRKRIAKY
Sbjct: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60

Query: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
          KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF
Sbjct: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91

[Close]

BLAST of CSPI04G01110 vs. NCBI nr
Match: KAA0044404.1 (hypothetical protein E6C27_scaffold46G001330 [Cucumis melo var. makuwa] >TYK29531.1 hypothetical protein E5676_scaffold655G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 6.0e-42
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 2  SARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKYK 61
          SARRIEIVSGKHNGAR APQIYRSPNLDTNGNRVGSAA GKPWGFADPEA RRKRIAKYK
Sbjct: 6  SARRIEIVSGKHNGARPAPQIYRSPNLDTNGNRVGSAAAGKPWGFADPEAKRRKRIAKYK 65

Query: 62 VYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
          VYTVEGRVKDSLRKGLRWIKN+CSRIVHGF
Sbjct: 66 VYTVEGRVKDSLRKGLRWIKNRCSRIVHGF 95

[Close]

BLAST of CSPI04G01110 vs. NCBI nr
Match: XP_022998630.1 (uncharacterized protein LOC111493216 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 8.4e-28
Identity = 66/89 (74.16%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSA-ATGKPWGFADPEAMRRKRIAKYKV 63
           RR+EIVSGK  G   + QIY SPNL T  NRVGSA A  KPW F DPE  RRKRIAKYKV
Sbjct: 12  RRVEIVSGKRYGGDGSCQIYGSPNLATTANRVGSASAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CSPI04G01110 vs. NCBI nr
Match: XP_023524599.1 (uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 9.3e-27
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGS-AATGKPWGFADPEAMRRKRIAKYKV 63
           R +EIVSGK  G   + QIY SPNL T+ NRVGS AA  KPW F DPE  RRKRIAKYKV
Sbjct: 12  RCVEIVSGKRYGGDGSCQIYGSPNLATSTNRVGSAAAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CSPI04G01110 vs. NCBI nr
Match: XP_022949041.1 (uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothetical protein SDJN03_00288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 64/89 (71.91%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVG-SAATGKPWGFADPEAMRRKRIAKYKV 63
           R +EIVSGK  G   + QIY SPNL T  NRVG +AA  KPW F DPE  RRKRIAKYKV
Sbjct: 12  RSVEIVSGKRYGGDGSCQIYGSPNLATTTNRVGPAAAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CSPI04G01110 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-16
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 4   RRIEIVSGKHN---GARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAMRRKRIAKY 63
           RR EIVSGK N   G R  P     P       R  ++++ +  G +D E  R+KRIA+Y
Sbjct: 20  RRKEIVSGKRNQIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLSDAEMKRKKRIARY 79

Query: 64  KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           K YTVEG+VK +L+ G RWIKNKC +IVH F
Sbjct: 80  KAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of CSPI04G01110 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 72.0 bits (175), Expect = 2.8e-13
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 6   IEIVSGKHNGARAAPQIYR----SPNLDTN-----GNRVGSAATGKPWGFADPEAMRRKR 65
           ++IV+GK  G     Q+Y     SP    +     G+   +  T  PW   D E  R+KR
Sbjct: 17  MDIVNGKGYGVGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKR 76

Query: 66  IAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHG 91
           IA YK Y +EG+VK +++KG  WIK++ S I+HG
Sbjct: 77  IATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of CSPI04G01110 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 24/54 (44.44%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 36  GSAATGKPWGFADPEAMRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVH 90
           G +++   WGF DP+  R+KR+  Y+ YTVEG++K S RK  +WIK+KC+++++
Sbjct: 63  GRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of CSPI04G01110 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 37  SAATGKPWGFADPEAMRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           S A  K WG  DPE  R+KR+A YK+Y VEG+VK S R   RW+K + +++V+G+
Sbjct: 50  SIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of CSPI04G01110 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 63.5 bits (153), Expect = 9.9e-11
Identity = 26/49 (53.06%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 42  KPWGFADPEAMRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHG 91
           K W + DPE  R++R+AKYK+Y+ EG++K +LRK  +WIK +CS+I+HG
Sbjct: 76  KGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

The following BLAST results are available for this feature:

BLAST of CSPI04G01110 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G01110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV97	2.4e-44	98.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002560 PE=4 SV=1	[more]
A0A5A7TMP6	2.9e-42	95.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1KD11	4.1e-28	74.16	uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216...	[more]
A0A6J1GAV9	7.6e-27	71.91	uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]
A0A1R3H0Q6	5.7e-22	63.83	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22163 PE=4 ...	[more]

BLAST of CSPI04G01110 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52839.1	4.9e-44	98.90	hypothetical protein Csa_014389 [Cucumis sativus]	[more]
KAA0044404.1	6.0e-42	95.56	hypothetical protein E6C27_scaffold46G001330 [Cucumis melo var. makuwa] >TYK2953...	[more]
XP_022998630.1	8.4e-28	74.16	uncharacterized protein LOC111493216 [Cucurbita maxima]	[more]
XP_023524599.1	9.3e-27	73.03	uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo]	[more]
XP_022949041.1	1.6e-26	71.91	uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothet...	[more]

BLAST of CSPI04G01110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47480.1	1.6e-16	48.35	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	2.8e-13	38.30	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	3.1e-12	44.44	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	5.3e-12	49.09	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	9.9e-11	53.06	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 46..90 e-value: 1.7E-25 score: 88.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..45
None	No IPR available	PANTHER	PTHR33193:SF13	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 3..91
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G01110.1	CSPI04G01110.1	mRNA