CSPI04G00600 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G00600
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 305951 .. 306409 (+)
RNA-Seq ExpressionCSPI04G00600
SyntenyCSPI04G00600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGCAGAAGTTATATTAAAGAAGAAAAGAAAAAAGGCAAACCTGCCTTTTTCCTTGGCTATAAATATGGAGGCCAAAGATGTTTATTTACTCTACTTTCTCTCTTCTTCTTTTTGCATACATAGAGAATATGAAGGTTCAACATGAAAAAAGTAGTGATTCATCAAGTAGAACAGTTGGAGAGAAACTTGCTCAAGCTTATCGGGATGTCAAGGTTGCCCTAACAAAAAACCAAGGCGTTGGAACGAGACGTAACCAAAGGGAAGATCCTATTAGAACCATAATGTTCTTGGGTTCATGGAGTCATACTTGAACTAGTTACTACCGTTTGTTTGATTAAACAAACTATTTCTTAAAAAACTTTCTTAACAACTGTATCGTTAAATGATCGTTCATTGTAAAAGTTAGTATATTGTTTTACAATAATAAACTATGACTTTGAAAGGTTTTCATAAGATT

mRNA sequence

GGGGCAGAAGTTATATTAAAGAAGAAAAGAAAAAAGGCAAACCTGCCTTTTTCCTTGGCTATAAATATGGAGGCCAAAGATGTTTATTTACTCTACTTTCTCTCTTCTTCTTTTTGCATACATAGAGAATATGAAGGTTCAACATGAAAAAAGTAGTGATTCATCAAGTAGAACAGTTGGAGAGAAACTTGCTCAAGCTTATCGGGATGTCAAGGTTGCCCTAACAAAAAACCAAGGCGTTGGAACGAGACGTAACCAAAGGGAAGATCCTATTAGAACCATAATGTTCTTGGGTTCATGGAGTCATACTTGAACTAGTTACTACCGTTTGTTTGATTAAACAAACTATTTCTTAAAAAACTTTCTTAACAACTGTATCGTTAAATGATCGTTCATTGTAAAAGTTAGTATATTGTTTTACAATAATAAACTATGACTTTGAAAGGTTTTCATAAGATT

Coding sequence (CDS)

ATGTTTATTTACTCTACTTTCTCTCTTCTTCTTTTTGCATACATAGAGAATATGAAGGTTCAACATGAAAAAAGTAGTGATTCATCAAGTAGAACAGTTGGAGAGAAACTTGCTCAAGCTTATCGGGATGTCAAGGTTGCCCTAACAAAAAACCAAGGCGTTGGAACGAGACGTAACCAAAGGGAAGATCCTATTAGAACCATAATGTTCTTGGGTTCATGGAGTCATACTTGA

Protein sequence

MFIYSTFSLLLFAYIENMKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT*
Homology
BLAST of CSPI04G00600 vs. ExPASy TrEMBL
Match: A0A0A0KY58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.1e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 18 MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 77
          MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT
Sbjct: 1  MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 60

BLAST of CSPI04G00600 vs. ExPASy TrEMBL
Match: A0A5A7TR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00850 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.5e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 18 MKVQHEKSSDSSSRTVGEKLAQAYRDVKV--ALTKNQGVGTRRNQREDPIRTIMFLGSWS 77
          MKVQHEKSSDSSSRT+GEKLAQAYRDVKV  ALTKN+GVG RRNQ+EDPIRTIMFLG WS
Sbjct: 1  MKVQHEKSSDSSSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG-WS 60

BLAST of CSPI04G00600 vs. ExPASy TrEMBL
Match: A0A7J7CC58 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00135 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 27 DSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 78
          + S RT+ EKL  AY     + T  Q  G + ++ EDPIR +MFLGSWSHT
Sbjct: 15 EHSKRTIREKLKDAYEAAMASNTSIQSGGRKSHREEDPIRIMMFLGSWSHT 65

BLAST of CSPI04G00600 vs. ExPASy TrEMBL
Match: A0A5N6QQU4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005957 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 34/77 (44.16%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 18 MKVQHEKSSDS----SSRTVGEKLAQAYRDVKVALTKN-----------QGVGTRR--NQ 77
          MK QH     S    S RTVGEKL +AY   ++A+  N           + +  RR    
Sbjct: 1  MKPQHTSGDGSLTQDSKRTVGEKLRRAYEVARIAVAGNRVWEGCSLPISKEIERRRWSYH 60

BLAST of CSPI04G00600 vs. NCBI nr
Match: KGN52786.1 (hypothetical protein Csa_015138 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 18 MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 77
          MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT
Sbjct: 1  MKVQHEKSSDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 60

BLAST of CSPI04G00600 vs. NCBI nr
Match: KAA0044357.1 (hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486.1 hypothetical protein E5676_scaffold655G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-18
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 18 MKVQHEKSSDSSSRTVGEKLAQAYRDVKV--ALTKNQGVGTRRNQREDPIRTIMFLGSWS 77
          MKVQHEKSSDSSSRT+GEKLAQAYRDVKV  ALTKN+GVG RRNQ+EDPIRTIMFLG WS
Sbjct: 1  MKVQHEKSSDSSSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG-WS 60

BLAST of CSPI04G00600 vs. NCBI nr
Match: TKY61797.1 (hypothetical protein E2542_SST11650 [Spatholobus suberectus])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 26 SDSSSRTVGEKLAQAYRDVKVALTKNQGVGTRR---------NQREDPIRTIMFLGSWSH 78
          ++ SSR+VGEKL Q  +   VA+T +     RR         +Q EDPIRT+MFLGSWSH
Sbjct: 12 ANESSRSVGEKLHQVCKAAMVAITTDASKQRRRLLPCNQRLSHQAEDPIRTLMFLGSWSH 71

BLAST of CSPI04G00600 vs. NCBI nr
Match: KAF5731457.1 (hypothetical protein HS088_TW18G00135 [Tripterygium wilfordii])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 27 DSSSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWSHT 78
          + S RT+ EKL  AY     + T  Q  G + ++ EDPIR +MFLGSWSHT
Sbjct: 15 EHSKRTIREKLKDAYEAAMASNTSIQSGGRKSHREEDPIRIMMFLGSWSHT 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KY586.1e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1[more]
A0A5A7TR668.5e-1987.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A7J7CC582.6e-0449.02Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW18G00135 ... [more]
A0A5N6QQU45.9e-0444.16Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005957 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN52786.11.3e-24100.00hypothetical protein Csa_015138 [Cucumis sativus][more]
KAA0044357.11.8e-1887.10hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486... [more]
TKY61797.11.9e-0449.18hypothetical protein E2542_SST11650 [Spatholobus suberectus][more]
KAF5731457.15.5e-0449.02hypothetical protein HS088_TW18G00135 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G00600.1CSPI04G00600.1mRNA