CSPI04G00390 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G00390
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 204782 .. 205079 (+)
RNA-Seq Expression	CSPI04G00390
Synteny	CSPI04G00390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAAGGCATGTGAAAGCCAATGAAAACCATAATATACTAGAAAGAGAGATCAGATTCACATATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGAC

mRNA sequence

ATACAAGGCATGTGAAAGCCAATGAAAACCATAATATACTAGAAAGAGAGATCAGATTCACATATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGAC

Coding sequence (CDS)

ATGGAGATGAAAAACAAGGTTGCTTTGGTGGCCATGGTGGTTGTGATGGTGGTTATGACTCGATCAGCCACTGTCACCGCTGCCATGGATGAGGGGATTGAACTCCCAACCAACGGTGAAGCAAGTTATTATGATACGCCACCGCCTCCTCGTGTTTGTCCTATTATGATATTACCATGCAAAACTGATTCTGAGTGTTCTCCATGCTATTGTAACAATGGCTCCTGCATTTGA

Protein sequence

MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPCKTDSECSPCYCNNGSCI*

Homology

[Close]

BLAST of CSPI04G00390 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.5e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCNNGSCI 78
          KTDSECSPCYCNNGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of CSPI04G00390 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IEL + GE +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEL-SGGENT-------ARVCPATILPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          KTDSECSPC CN  +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of CSPI04G00390 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-11
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IE+ + GE +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEV-SGGENT-------ARVCPATILPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          KTDSECSPC CN  +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of CSPI04G00390 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.2e-10
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IEL + GE +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEL-SGGENT-------ARVCPATLLPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          +TDSECSPC CN  +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

[Close]

BLAST of CSPI04G00390 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCNNGSCI 78
          KTDSECSPCYCNNGSCI
Sbjct: 61 KTDSECSPCYCNNGSCI 77

[Close]

BLAST of CSPI04G00390 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.0e-11
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IEL + GE +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEL-SGGENT-------ARVCPATILPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          KTDSECSPC CN  +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of CSPI04G00390 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IE+ + GE +        RVCP  ILPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEV-SGGENT-------ARVCPATILPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          KTDSECSPC CN  +GSCI
Sbjct: 61 KTDSECSPCICNLQSGSCI 70

[Close]

BLAST of CSPI04G00390 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 8.7e-10
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60
          MEMKNK ALVAMVV MVVM +S T T   DE IEL + GE +        RVCP  +LPC
Sbjct: 1  MEMKNKAALVAMVVFMVVMAQSVT-TITADETIEL-SGGENT-------ARVCPATLLPC 60

Query: 61 KTDSECSPCYCN--NGSCI 78
          +TDSECSPC CN  +G+C+
Sbjct: 61 ETDSECSPCICNVKSGACV 70

The following BLAST results are available for this feature:

BLAST of CSPI04G00390 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G00390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY39	6.5e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1	[more]
A0A5A7TRY5	2.9e-11	63.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1Q5	6.5e-11	62.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KWE9	4.2e-10	58.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1	[more]

BLAST of CSPI04G00390 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52766.1	1.3e-34	100.00	hypothetical protein Csa_015422 [Cucumis sativus]	[more]
KAA0044341.1	6.0e-11	63.29	hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa]	[more]
TYK29470.1	1.3e-10	62.03	hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa]	[more]
KGN52767.1	8.7e-10	58.23	hypothetical protein Csa_015168 [Cucumis sativus]	[more]

BLAST of CSPI04G00390 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00390.1	CSPI04G00390.1	mRNA