CSPI04G00380 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G00380
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Radical SAM superfamily protein isoform 1
Location	Chr4: 202236 .. 202623 (-)
RNA-Seq Expression	CSPI04G00380
Synteny	CSPI04G00380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTTCATTTTCTCTTATAACACAAAGAAGAATAAAAGTTAGGATAATATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTACTGATCACTGCCAACGATGAGTCGTCGCACCGACGAACACGATCAGATTACCAGCCACCAACATTCGAGTTTTTGGACCAACGATCGACACGGGAGTTAACACATTCCCGCAGTGTCAACAAAGTCGCCTTTGGATCATCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATACTGGTCAAGTTTCAAATAGGCCTGCTTATAATTATGGTAATCCTTCTCGTTGA

mRNA sequence

GCTTTTCATTTTCTCTTATAACACAAAGAAGAATAAAAGTTAGGATAATATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTACTGATCACTGCCAACGATGAGTCGTCGCACCGACGAACACGATCAGATTACCAGCCACCAACATTCGAGTTTTTGGACCAACGATCGACACGGGAGTTAACACATTCCCGCAGTGTCAACAAAGTCGCCTTTGGATCATCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATACTGGTCAAGTTTCAAATAGGCCTGCTTATAATTATGGTAATCCTTCTCGTTGA

Coding sequence (CDS)

ATGGAGGGTTTAATTCCTTATCTTTTCCATGCAATGAAGAAGCAAAAGCCACGCCACAGCTATAGAAGCCAATCCGTAGGTTCAAGCAGGAGCTACCATCTACTGATCACTGCCAACGATGAGTCGTCGCACCGACGAACACGATCAGATTACCAGCCACCAACATTCGAGTTTTTGGACCAACGATCGACACGGGAGTTAACACATTCCCGCAGTGTCAACAAAGTCGCCTTTGGATCATCTACTAGACCTAGTAATGGATTTGAATCTAACTTCTATTCTTATACTGGTCAAGTTTCAAATAGGCCTGCTTATAATTATGGTAATCCTTCTCGTTGA

Protein sequence

MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR*

Homology

[Close]

BLAST of CSPI04G00380 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 113
           QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of CSPI04G00380 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.9e-51
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 113
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of CSPI04G00380 vs. ExPASy TrEMBL
Match: A0A7J7HFZ0 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 49/77 (63.64%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLIT--ANDESSHRRTRSDYQPPTFEF 60
          MEGLIP L +A+KKQ+P H+YR  S GS+RSYHLL+   + + SSHRRTRS++QPPT +F
Sbjct: 1  MEGLIPMLINALKKQRPHHAYRGLSEGSNRSYHLLMAPDSREGSSHRRTRSEFQPPTVDF 60

Query: 61 LDQRSTRELTHSRSVNK 76
          LDQRST E +HSRS N+
Sbjct: 61 LDQRSTLEFSHSRSFNR 77

[Close]

BLAST of CSPI04G00380 vs. ExPASy TrEMBL
Match: A0A5C7I5L1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011123 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLI--TANDESSHRRTRSDYQPP--TF 60
          MEGLIP+L HAMKKQ+P+HSYRS SVGS+RSYHLL    A D SSHRRTRSD+QPP  T 
Sbjct: 1  MEGLIPFLIHAMKKQRPQHSYRSFSVGSTRSYHLLNGGDAVDGSSHRRTRSDFQPPTSTA 60

Query: 61 EFLDQRSTRELTHSRSVNK 76
          +FL QRS  E   SR+VN+
Sbjct: 61 QFLGQRSGIEFVRSRTVNR 79

[Close]

BLAST of CSPI04G00380 vs. ExPASy TrEMBL
Match: B9SNE5 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175590 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.2e-17
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITAN--DESSHRRTRSDYQPPTFEF 60
           MEGLIPYL HA++KQKP++SYRS SVGSSRSYHLL  A+    SSHRRTRS++QPPT E 
Sbjct: 1   MEGLIPYLLHAIRKQKPQNSYRSFSVGSSRSYHLLTGADSFSGSSHRRTRSEFQPPTMEL 60

Query: 61  LDQRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVS 101
           LDQR   E   S S+      +S + ++G +    SY  Q+S
Sbjct: 61  LDQRQGLEYLRSGSLRNHRQVTSPKAASGSKLGTTSYPQQMS 102

[Close]

BLAST of CSPI04G00380 vs. NCBI nr
Match: KGN52765.1 (hypothetical protein Csa_015267 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 8.9e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 113
           QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of CSPI04G00380 vs. NCBI nr
Match: KAA0044340.1 (putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 3.9e-51
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  -QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 113
            QR ++ELTHSRSVNKVAFGSSTRPSNGFESNFYSY GQVSNRPAY+YGNP R
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of CSPI04G00380 vs. NCBI nr
Match: XP_038905929.1 (uncharacterized protein LOC120091851 [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 8.1e-41
Identity = 92/110 (83.64%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH+YRSQSVGSSRSYHLLIT NDESSHRRTRSD+QPP  EF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLIT-NDESSHRRTRSDFQPPALEFSD 60

Query: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNP 111
           QRST EL HSRSV+K AFGSSTRPS GFES F SY GQV+N+P Y YGNP
Sbjct: 61  QRSTHELMHSRSVSKGAFGSSTRPSYGFESGFSSYPGQVTNKPTY-YGNP 108

[Close]

BLAST of CSPI04G00380 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-29
Identity = 75/101 (74.26%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--TNDESSHRRTRSDFQPPRFEYLD 60

Query: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSN 102
           QRS  EL HSRSV+K AFGS             SY GQVSN
Sbjct: 61  QRSGHELMHSRSVSKGAFGS-------------SYAGQVSN 86

[Close]

BLAST of CSPI04G00380 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.5 bits (345), Expect = 7.1e-29
Identity = 75/101 (74.26%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60
           MEGLIPYLFHAMKKQKPRH YRSQSVGSSRSYHLL   NDESSHRRTRSD+QPP FE+LD
Sbjct: 1   MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLL--TNDESSHRRTRSDFQPPRFEYLD 60

Query: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSN 102
           QRS  EL HSRSV+K AFGS             SY GQVSN
Sbjct: 61  QRSGHELMHSRSVSKGAFGS-------------SYAGQVSN 86

[Close]

BLAST of CSPI04G00380 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-11
Identity = 43/73 (58.90%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 1  MEGLIPYLFHAMKK-QKPRHS-YRSQSVGSSRSYHLLITAND------ESSHRRTRSDYQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+   D       SSHRRTRSDY 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 PPT-FEFLDQRST 65
          P    +  DQRS+
Sbjct: 61 PHVIMDKFDQRSS 73

The following BLAST results are available for this feature:

BLAST of CSPI04G00380 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G00380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06	4.3e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1	[more]
A0A5A7TM95	1.9e-51	93.81	Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A7J7HFZ0	8.0e-18	63.64	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1	[more]
A0A5C7I5L1	4.0e-17	68.35	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_011123 PE=4 SV=1	[more]
B9SNE5	5.2e-17	54.90	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0175590 PE=4 SV=1	[more]

BLAST of CSPI04G00380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52765.1	8.9e-56	100.00	hypothetical protein Csa_015267 [Cucumis sativus]	[more]
KAA0044340.1	3.9e-51	93.81	putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 p...	[more]
XP_038905929.1	8.1e-41	83.64	uncharacterized protein LOC120091851 [Benincasa hispida]	[more]
KAG6576920.1	7.1e-29	74.26	hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014945.1	7.1e-29	74.26	NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CSPI04G00380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19615.1	4.2e-11	58.90	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38370	BETA-1,4-XYLOSIDASE	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00380.1	CSPI04G00380.1	mRNA