CSPI04G00140 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAATTTTGAGTATTGTGTGTATATATAAATAAATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAGAGATTGTATTTGAATGCGCTCAAGGTGTTTGTGAATATGCTCAGGAGAGTTTTAAGGGAAGTGAATGCATAAACCATATCTGTTTTGGAAATGTGGGAAGAAGAGGATCTACAAAGAACAAAGGGAAACGCTCAGTCAGGTATGTATATATATATATATATACATATTGTTTTTGTTGTGTGTTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTGGCTATGTAGTTTCTTTAGTTCTTCAACAATGGCTGAACTAGAGTTTTACATTTACTTCCCTTTCTTTTGTATTTATATATATTCTCTAACCGAACACAACTCAACTAGCCTACCATGTATTAGCAATCAGTTTCAGGTGC AAAAATTTTGAGTATTGTGTGTATATATAAATAAATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAGAGATTGTATTTGAATGCGCTCAAGGTGTTTGTGAATATGCTCAGGAGAGTTTTAAGGGAAGTGAATGCATAAACCATATCTGTTTTGGAAATGTGGGAAGAAGAGGATCTACAAAGAACAAAGGGAAACGCTCAGTCAGGTATGTATATATATATATATATACATATTGTTTTTGTTGTGTGTTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTGGCTATGTAGTTTCTTTAGTTCTTCAACAATGGCTGAACTAGAGTTTTACATTTACTTCCCTTTCTTTTGTATTTATATATATTCTCTAACCGAACACAACTCAACTAGCCTACCATGTATTAGCAATCAGTTTCAGGTGC ATGAGGAGGGCCATGTATTTGGGCGGCAATATAACCACGATTTTCCCGCCGGAAATTCTACCGTCGTTACCGTCTCTTCTTCCTCTCCCACTTAACCATCACAAGCAGATCAGCGCAGTAATTCGTTCCGAGAAAACAATGGCCAACGCTGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTGAAGACGGAGCCGGCAGAGTGGTCGTGGGCGGACCAAGCGGCCAACGACGGACGAACAACGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCCGGGGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAATGGTACTCGTCAGTGGACGATGAAGTCGTCGTGGACGTGGAGGCGGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGAGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCAAGGCTGTCGGTCGTGCCGGTTACGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGGTTTGAAGGAGATGGAACTGAGGGCGGGGATGGGAGTGAGGAATAG MRRAMYLGGNITTIFPPEILPSLPSLLPLPLNHHKQISAVIRSEKTMANAVAGDKRQYWLLKTEPAEWSWADQAANDGRTTWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWYSSVDDEVVVDVEAVGEMREPVDLKEMKKRMEGMKNFALFRQPRLSVVPVTKEIWDKICELGGGFEGDGTEGGDGSEE* Homology
BLAST of CSPI04G00140 vs. ExPASy Swiss-Prot
Match: Q6P3E0 (Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 3.2e-14 Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy Swiss-Prot
Match: Q9P016 (Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 4.2e-14 Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy Swiss-Prot
Match: Q91YJ3 (Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 5.4e-14 Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy Swiss-Prot
Match: Q90679 (Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13 Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy Swiss-Prot
Match: Q6PFL8 (Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.4e-11 Identity = 55/186 (29.57%), Postives = 90/186 (48.39%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy TrEMBL
Match: A0A0A0KWC0 (EVE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000630 PE=4 SV=1) HSP 1 Score: 410.2 bits (1053), Expect = 5.0e-111 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy TrEMBL
Match: E5GBH2 (EVE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 5.3e-97 Identity = 181/202 (89.60%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy TrEMBL
Match: A0A1S4E0I6 (thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 5.3e-97 Identity = 181/202 (89.60%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy TrEMBL
Match: A0A5D3E131 (Thymocyte nuclear protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00410 PE=4 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 1.7e-79 Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 0
BLAST of CSPI04G00140 vs. ExPASy TrEMBL
Match: A0A6J1JS35 (thymocyte nuclear protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489276 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.3e-68 Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0
BLAST of CSPI04G00140 vs. NCBI nr
Match: XP_004150262.2 (thymocyte nuclear protein 1 [Cucumis sativus] >KGN52742.1 hypothetical protein Csa_014551 [Cucumis sativus]) HSP 1 Score: 410.2 bits (1053), Expect = 1.0e-110 Identity = 202/203 (99.51%), Postives = 202/203 (99.51%), Query Frame = 0
BLAST of CSPI04G00140 vs. NCBI nr
Match: XP_016901490.1 (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo] >ADN33814.1 hypothetical protein [Cucumis melo subsp. melo]) HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96 Identity = 181/202 (89.60%), Postives = 188/202 (93.07%), Query Frame = 0
BLAST of CSPI04G00140 vs. NCBI nr
Match: KAA0044320.1 (thymocyte nuclear protein 1 [Cucumis melo var. makuwa] >TYK29448.1 thymocyte nuclear protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 305.4 bits (781), Expect = 3.6e-79 Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 0
BLAST of CSPI04G00140 vs. NCBI nr
Match: XP_038905606.1 (thymocyte nuclear protein 1 [Benincasa hispida]) HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76 Identity = 144/156 (92.31%), Postives = 148/156 (94.87%), Query Frame = 0
BLAST of CSPI04G00140 vs. NCBI nr
Match: KAG7030934.1 (Thymocyte nuclear protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 292.4 bits (747), Expect = 3.1e-75 Identity = 148/201 (73.63%), Postives = 167/201 (83.08%), Query Frame = 0
BLAST of CSPI04G00140 vs. TAIR 10
Match: AT2G14660.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). ) HSP 1 Score: 193.7 bits (491), Expect = 1.4e-49 Identity = 99/157 (63.06%), Postives = 121/157 (77.07%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|