CSPI03G47030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G47030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Prolamin_like domain-containing protein
Location	Chr3: 40108653 .. 40109346 (+)
RNA-Seq Expression	CSPI03G47030
Synteny	CSPI03G47030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCCTATTCATATATATATATATATACACATAAACACCAAATCGAAGAAGAAGATGTAGAATCAATCAAAGGAAAAGGGGGTGAAGAAGAAGAAGATCAAACGAACCTGCCAATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGAAGGCTTAAATAGTAAAATCACACCGTTTATTTGGATGGTTTTCGGCTTTTTTTCGCTTAATTTCTTTTCTTTTTTATTACTTTCAACTGCTTGTTTTATTTTTACTTAAATAAAATGGATTTTGTGAAATAAAGTATAAAGTGATACTTTATTTCATTTCAAGATAATATATATTGATAAAATAATTTAATATAATAGAGATCGAACT

mRNA sequence

TCTCCCTATTCATATATATATATATATACACATAAACACCAAATCGAAGAAGAAGATGTAGAATCAATCAAAGGAAAAGGGGGTGAAGAAGAAGAAGATCAAACGAACCTGCCAATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGAAGGCTTAAATAGTAAAATCACACCGTTTATTTGGATGGTTTTCGGCTTTTTTTCGCTTAATTTCTTTTCTTTTTTATTACTTTCAACTGCTTGTTTTATTTTTACTTAAATAAAATGGATTTTGTGAAATAAAGTATAAAGTGATACTTTATTTCATTTCAAGATAATATATATTGATAAAATAATTTAATATAATAGAGATCGAACT

Coding sequence (CDS)

ATGTCGAAATCTGTTCGATTTTTCGGATTCTTCCTCTGTGTCCTAGCAACTTCATCGTCGTTTCACTCGGCTTTCGCTGTTAGAAAAATTGCGGAGGCGGTTTATTCATCCGATTGTTGGGACGCGATAAACGCGGTGAAAGGATGTCAGAATGAAATCGACACGGCCATGAAGAGTAATGAGATCGAGGTGAGTTACGATTGTTGTAAAGTGATTTTGCATGGAATGCCGGAGAAATGCGCCGCCGTGGTTTTTTCGTCTGGTGGAGAGTTTTCCCCGGATGTTAGCGGTGCGGTTAACGAATATTGCGACGGAATGGGAATTACTCCGCCGGTGCTTGAAACGGAGGATACTAAAGTGGAAGAAAATTGA

Protein sequence

MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEEN*

Homology

[Close]

BLAST of CSPI03G47030 vs. ExPASy TrEMBL
Match: A0A0A0LEG0 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G904090 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN
Sbjct: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           EEN
Sbjct: 121 EEN 123

[Close]

BLAST of CSPI03G47030 vs. ExPASy TrEMBL
Match: A0A5A7TB28 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004160 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.0e-59
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           +EN
Sbjct: 121 DEN 123

[Close]

BLAST of CSPI03G47030 vs. ExPASy TrEMBL
Match: A0A6J1EX44 (uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC111437329 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.8e-38
Identity = 85/123 (69.11%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSS-SFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEID 60
           M KSVRF GF L +  +SS    SAFA+R I EA+ S+D     CWDAI AV+GCQ+EID
Sbjct: 1   MLKSVRFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEID 60

Query: 61  TAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLE 118
            AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLE
Sbjct: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLE 120

[Close]

BLAST of CSPI03G47030 vs. ExPASy TrEMBL
Match: A0A5D2P8P3 (Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A09G228100v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI  ++   +I++SY CC+ +  GM  KC   +F+  G FSP+    
Sbjct: 47  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 106

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 107 IKGYCATLGVTLP 117

[Close]

BLAST of CSPI03G47030 vs. ExPASy TrEMBL
Match: A0A2P5VRJ4 (Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39249 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI  ++   +I++SY CC+ +  GM  KC   +F+  G FSP+    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

[Close]

BLAST of CSPI03G47030 vs. NCBI nr
Match: KAA0038539.1 (hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136.1 hypothetical protein E5676_scaffold455G004160 [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 114/123 (92.68%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSDCWDAINAVKGCQNEIDTAMKSN 60
           MSKS RFFGFFLC LA SSSF SAFAVRKIAEAVYS+DCWDAINAV+GCQN+IDTAMKSN
Sbjct: 1   MSKSFRFFGFFLCALAISSSFQSAFAVRKIAEAVYSADCWDAINAVEGCQNQIDTAMKSN 60

Query: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKV 120
           EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSP+VSGAVNEYCDGMGITPPVLETEDTKV
Sbjct: 61  EIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPEVSGAVNEYCDGMGITPPVLETEDTKV 120

Query: 121 EEN 124
           +EN
Sbjct: 121 DEN 123

[Close]

BLAST of CSPI03G47030 vs. NCBI nr
Match: KAG6571831.1 (hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.6 bits (431), Expect = 8.3e-39
Identity = 85/118 (72.03%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSSSFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEIDT 60
           MSKSVRFFGFFL  L  SS  HSAFA+RK  +A+ S+D     C DA+NAV+GCQ EID 
Sbjct: 1   MSKSVRFFGFFLLALTISSLIHSAFALRKFPKAIDSADWSTAACLDALNAVEGCQGEIDM 60

Query: 61  AMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVL 114
           A+ SNEIEVSY+CC+VILHG+PEKCAAVVFSSGGE S ++SGAV EYCDGMGITPPVL
Sbjct: 61  AINSNEIEVSYNCCRVILHGLPEKCAAVVFSSGGESSSEISGAVKEYCDGMGITPPVL 118

[Close]

BLAST of CSPI03G47030 vs. NCBI nr
Match: XP_022931003.1 (uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothetical protein SDJN03_03548, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 1.2e-37
Identity = 85/123 (69.11%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 1   MSKSVRFFGFFLCVLATSS-SFHSAFAVRKIAEAVYSSD-----CWDAINAVKGCQNEID 60
           M KSVRF GF L +  +SS    SAFA+R I EA+ S+D     CWDAI AV+GCQ+EID
Sbjct: 1   MLKSVRFVGFLLALAISSSIQSESAFALRNIPEALNSADWSAATCWDAITAVEGCQDEID 60

Query: 61  TAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLE 118
            AMKSNEIEVS DCC+ ILHG+P+KCAA VFSSGGEFS ++SGAVNEYCDGMGITPPVLE
Sbjct: 61  MAMKSNEIEVSRDCCRAILHGLPDKCAAEVFSSGGEFSAEISGAVNEYCDGMGITPPVLE 120

[Close]

BLAST of CSPI03G47030 vs. NCBI nr
Match: KAE8652857.1 (hypothetical protein Csa_023774, partial [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 63  EVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 122
           +VSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE
Sbjct: 6   KVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGAVNEYCDGMGITPPVLETEDTKVEE 65

Query: 123 N 124
           N
Sbjct: 66  N 66

[Close]

BLAST of CSPI03G47030 vs. NCBI nr
Match: PPR81469.1 (hypothetical protein GOBAR_AA39249 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-06
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 39  CWDAINAVKGCQNEIDTAMKSNEIEVSYDCCKVILHGMPEKCAAVVFSSGGEFSPDVSGA 98
           CW  IN   GC++EI  ++   +I++SY CC+ +  GM  KC   +F+  G FSP+    
Sbjct: 36  CWAQINKANGCEHEIYASLVKKKIKLSYGCCEAV-QGMSSKCKNWMFNH-GRFSPEFGDQ 95

Query: 99  VNEYCDGMGITPP 112
           +  YC  +G+T P
Sbjct: 96  IKGYCATLGVTLP 106

The following BLAST results are available for this feature:

BLAST of CSPI03G47030 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G47030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEG0	1.4e-63	100.00	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G9040...	[more]
A0A5A7TB28	6.0e-59	92.68	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1EX44	5.8e-38	69.11	uncharacterized protein LOC111437329 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A5D2P8P3	4.5e-06	36.99	Prolamin_like domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES33...	[more]
A0A2P5VRJ4	4.5e-06	36.99	Prolamin_like domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR...	[more]

BLAST of CSPI03G47030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038539.1	1.2e-58	92.68	hypothetical protein E6C27_scaffold92G00660 [Cucumis melo var. makuwa] >TYK31136...	[more]
KAG6571831.1	8.3e-39	72.03	hypothetical protein SDJN03_28559, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931003.1	1.2e-37	69.11	uncharacterized protein LOC111437329 [Cucurbita moschata] >KAG6606231.1 hypothet...	[more]
KAE8652857.1	9.6e-27	98.36	hypothetical protein Csa_023774, partial [Cucumis sativus]	[more]
PPR81469.1	9.3e-06	36.99	hypothetical protein GOBAR_AA39249 [Gossypium barbadense]	[more]

BLAST of CSPI03G47030 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 38..104 e-value: 6.0E-9 score: 36.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G47030.1	CSPI03G47030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity