CSPI03G46880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G46880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LOL1
Location	Chr3: 39977177 .. 39980243 (-)
RNA-Seq Expression	CSPI03G46880
Synteny	CSPI03G46880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTGGGGATTAAGAGAAGGCCTTGCAAAGGAAAGAAAGAAAAGAAAGAAAAAGCTTTGTTGTAAGAAAGGCTTCAACAAACAACTATTTGATACTTATCCTTTTGCTTTTATGTTTCTTACTTTGTTTACTTTATCAAATCTAAAATTTTTACATCCCTTTCCTCTATCTCCCCTTCCTTTCTTCTATCTGCTCCTCCAACTTGCAAACGTATGAATTTCCCCTCTCACTTCAACTCATTGCCTTTTCAACCTTTCTTCCCCCAGCTTCTTCCTAGCTGGGTTTCTCCATTTTTTTGGTTTGTTCCATTCCATTTCTTCTCAATATCAATACACTGCATTACATTACTTTACTTTACTCTTTTTTCAGGGTCCTTCCACTTTTCAAACACCCTCATCAAAATTCCTTCATTTCTATCCAACTCTCTTCCCAACCCATGTTGCAATTCTCTATCTTTATTTGTTTTCTTCTTTTGATTCCTCTATTTTCTGTGAATTTTCTCAACAGGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGGTTGCTGAGAAAATGTATTAGTTTCCCATTTTCCAATTTTCTCATCACTGGAGCTGTAAATCCTATTGTTTGATGTTGAATATTCATAGCGTTGATTCTAAATTAGGTTTTATGAGCGATTCTTCAAGAAGAGGCTTATGTTTTTTAGAATTAGATTGGGTTTTTTTTATGTGTTTGGTTTCATTAGATCAGTGATTTGATATTTGGTACTCAACTGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGTATATTTGTTCTTCCTCTTCCTTTTCACCATCTAGCTCGTGCCAATGCTAAATTTGAAATTTCTGTTGGAGAATTCTGTTGTTTTTTGTTTAGAAGAAAGATTGGAAGTTTTAGTAACTTTTTGTGTAAAACAGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTATGGAAATCTCAGTAACTTTCAAAAACTCGAATTGAAATAACGTTAGACATCCGGAACAAATCTTGGTAGATTGCGTAGGCTGTTTAGAACAATTCATTCCTAGCTAACTCCCATCATGAGTAGCAACATTATGTTATTGATTGATTCACTATTCACTAAAATTAGCATATCGTTAGAAAATAGTTTAGAGCTACAAACCTTTGTTTGGTAAGGCAATACTCATGTGAATCGAGCAATAAATCCATACTGTTTCAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAGAAAAGAAACTTCTTTTTGTTGAACTCTCTTTTTCTATACGAGCATTGTTGAACTCTCTTTGTCCATATGAACATGAACTTGGAATAAAGTCATTCGATCTAAATCATCGGGTTGTTTAAGAATTAACGAAAGCTTAGAACATTAAACATGGCTCTGATAGGACTCAAAATTCTTTAATCTATGCTTTTAAAGTTTTAACTCTATCTTTCCATTGTCATTTCTTACTTGAATATGAAGTGAAACCATACATTCTAGTATCTCACATTATCAATGTCTTTCATTGTAGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGACAAGTTCTTATACTGTCTTGAGTGTAATATAACTGTTGGATAAAGATGGATTTTGGCTTGTTTTTTTTTTTTTTGCTTTTTCTTCCCC

mRNA sequence

GAACTGGGGATTAAGAGAAGGCCTTGCAAAGGAAAGAAAGAAAAGAAAGAAAAAGCTTTGTTGTTCATCTCCACAAACTTGTTTCCATGGAGGAAGTAGCTGGTTTTGTCTGAGCTTTTGAGAGCTTGGTTTGAAGATAGAGATAAAGAAAAAGAAAAGTTAGGAAAGATTTTGCTTTATCAAAGCTGCAAAATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAATAGCTAAAGTTATCATAAACATGGTTGTCCAAAATTCGACAACTGCGGCTTTGCCCAATATTTGTAATGCCCTCGAGGGTGTTTGTCTTGACTTGACAAACGGAGGTTCCTCATCATATTCACTTGTATAGAGCTGTATTTCTGCACGTGAACTTTAAATGTTGCTATTTTCTTCATCTTCACAGTGGTTTGATGAATGCTTTAAGTAGTTTTGAGAAAATATATATAAATATGGTAGAGAGACAAGTTCTTATACTGTCTTGAGTGTAATATAACTGTTGGATAAAGATGGATTTTGGCTTGTTTTTTTTTTTTTTGCTTTTTCTTCCCC

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCCTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCTGTACCGCCACCCGGCACAGAAATGGCACAATTGGTGTGTGGAGGCTGCCACACTCTTCTCATGTACATCCGTGGTGCCACGAGTGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGATCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATCGATCAAAAAGCATAA

Protein sequence

MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSAIDQKA*

Homology

[Close]

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.1e-67
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-65
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S    DQK
Sbjct: 163 KCAVCNFVTSVGASPGT-DQK 181

[Close]

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-39
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMST 138
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM+T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116

[Close]

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-39
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 140
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM+T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119

[Close]

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-35
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.7e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.1e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.7e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 145
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL
Match: A0A6J1ET02 (protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSA+DQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAVDQKA 144

[Close]

BLAST of CSPI03G46880 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 7.6e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 6.5e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. NCBI nr
Match: XP_038887483.1 (protein LOL1 isoform X2 [Benincasa hispida])

HSP 1 Score: 288.1 bits (736), Expect = 4.2e-74
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTS IDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSTIDQKA 144

[Close]

BLAST of CSPI03G46880 vs. NCBI nr
Match: XP_022972004.1 (protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 3.5e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 145
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of CSPI03G46880 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-68
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of CSPI03G46880 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 255.0 bits (650), Expect = 3.7e-68
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of CSPI03G46880 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 236.9 bits (603), Expect = 1.0e-62
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 139
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG STS 
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTST 180

Query: 140 IDQK 144
            D K
Sbjct: 181 TDSK 184

[Close]

BLAST of CSPI03G46880 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-36
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of CSPI03G46880 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-36
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of CSPI03G46880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	5.1e-67	86.00	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	2.8e-65	87.23	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	1.2e-39	64.35	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	3.5e-39	63.56	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	2.3e-35	57.81	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of CSPI03G46880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEE4	3.7e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A1S3CQ35	3.1e-75	99.31	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A6J1GKN9	7.0e-75	97.22	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A6J1I7B6	1.7e-73	96.55	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]
A0A6J1ET02	2.2e-73	95.83	protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1	[more]

BLAST of CSPI03G46880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148490.1	7.6e-76	100.00	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_008465951.1	6.5e-75	99.31	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]
XP_022952054.1	1.4e-74	97.22	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]
XP_038887483.1	4.2e-74	97.22	protein LOL1 isoform X2 [Benincasa hispida]	[more]
XP_022972004.1	3.5e-73	96.55	protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbit...	[more]

BLAST of CSPI03G46880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	3.7e-68	86.00	lsd one like 1	[more]
AT1G32540.3	3.7e-68	86.00	lsd one like 1	[more]
AT1G32540.1	1.0e-62	91.94	lsd one like 1	[more]
AT4G20380.2	1.7e-36	57.81	LSD1 zinc finger family protein	[more]
AT4G20380.1	1.7e-36	57.81	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 65..94 e-value: 8.6E-15 score: 52.1 coord: 26..56 e-value: 9.7E-13 score: 45.5 coord: 103..133 e-value: 1.8E-11 score: 41.4
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 106..130 e-value: 8.3E-13 score: 47.9 coord: 68..92 e-value: 1.5E-12 score: 47.1 coord: 29..53 e-value: 8.6E-11 score: 41.5
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..141
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..141
IPR036280	Multiheme cytochrome superfamily	SUPERFAMILY	48695	Multiheme cytochromes	coord: 29..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G46880.3	CSPI03G46880.3	mRNA
CSPI03G46880.1	CSPI03G46880.1	mRNA
CSPI03G46880.2	CSPI03G46880.2	mRNA
CSPI03G46880.5	CSPI03G46880.5	mRNA
CSPI03G46880.4	CSPI03G46880.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus