CSPI03G46250 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G46250
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon-derived protein PEG10, putative
LocationChr3: 39531021 .. 39531700 (-)
RNA-Seq ExpressionCSPI03G46250
SyntenyCSPI03G46250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTGCAATGCAATAAGCTTCTTGTAGTGTTACGACAGATTACCTTCATAATTTCTTTCGATCAGTTGTAGTGTACGTAGCAGAAATCATGGAGGACGTTGAAGCGGAAACCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAGTCCTCCCAAAATCGCCAACTCAGAGCCACTGTTCATGAACAAGCCAAGGTACTCAAAATCACAATTTACGATCACTATATATATAATTAATCTATCCTAACTTGTCTAATATATATCGCTCTGGCTTATTTGTTTATTTGATTCGCGATTTTGATAAATTAAAACGTACGTAGATGGATTACCTTTCAGGAGAGAAAGATGCTGGGGAAAACTGTGGAGGATTTGAAGATCCAGTTGGCTAGGGAGCGTATGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATTCCTTTTTGCTGCCTTTTGATTTGTTTGAGTTCTGATGGAATAATAGTGGATAGTAGTCAGTTCATGAATTACATCACTGGATTCATCATCGTCTTCCATTGTTGTTATGTAGTTATTTTAGCTTAGGTTTTTGAATGTATGAAGAATTTCTTCGGCGAGA

mRNA sequence

AAACTGCAATGCAATAAGCTTCTTGTAGTGTTACGACAGATTACCTTCATAATTTCTTTCGATCAGTTGTAGTGTACGTAGCAGAAATCATGGAGGACGTTGAAGCGGAAACCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAGTCCTCCCAAAATCGCCAACTCAGAGCCACTGTTCATGAACAAGCCAAGGAGAGAAAGATGCTGGGGAAAACTGTGGAGGATTTGAAGATCCAGTTGGCTAGGGAGCGTATGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATTCCTTTTTGCTGCCTTTTGATTTGTTTGAGTTCTGATGGAATAATAGTGGATAGTAGTCAGTTCATGAATTACATCACTGGATTCATCATCGTCTTCCATTGTTGTTATGTAGTTATTTTAGCTTAGGTTTTTGAATGTATGAAGAATTTCTTCGGCGAGA

Coding sequence (CDS)

ATGGAGGACGTTGAAGCGGAAACCAAAGACGAAGCAATGCGAGGATCCAAAACCGCCATTCGATGTGCAAAAGCAGCTTTTCTACTTTCTTCACTCAAGTCCTCCCAAAATCGCCAACTCAGAGCCACTGTTCATGAACAAGCCAAGGAGAGAAAGATGCTGGGGAAAACTGTGGAGGATTTGAAGATCCAGTTGGCTAGGGAGCGTATGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGTTTATTCCTTTTTGCTGCCTTTTGA

Protein sequence

MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVEDLKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF*
Homology
[Close]
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.7e-40
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           MEDVEAETK+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKE+KMLGKTV D
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLV+SLSSLFLFAAF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME+VEAE+KDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKERKML KTV D
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLVISLSSL LF AF
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAF 102

[Close]
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.5e-28
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME VEAE++DEAMR SKTA RCAKAAFL+SS KS QNR LRA+V EQAKE++ L K V D
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKI+LA ER RNKRIKLCGLMEFVLQLLLVISLSS FLF AF
Sbjct: 61  LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAF 101

[Close]
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME VEAE++DEAMR S+TA RCAKAAF+LSSLKSSQN  LRATV+E  KE++ L KT+ D
Sbjct: 1   MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LK++LARER+RNKRIKLCGLMEFVLQ+LLVI+LSS F F AF
Sbjct: 61  LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAF 101

[Close]
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match: A0A6A1UUX9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 54/101 (53.47%), Postives = 78/101 (77.23%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           +E +E ETK EA++ SK  IRCAKAAFLLS+LKS  N  + +T  +Q +E +M+ + +E+
Sbjct: 3   IEGLEMETKHEALK-SKMLIRCAKAAFLLSALKSFPNLSMNSTTDDQDEEEEMVRREIEE 62

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAA 102
           LK++LARER++NK++KLCGLME VLQ+ +V+SLS+ F   A
Sbjct: 63  LKMELARERLKNKKMKLCGLMEMVLQVAVVLSLSTFFFMFA 102

[Close]
BLAST of CSPI03G46250 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           MEDVEAETK+EAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKE+KMLGKTV D
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLV+SLSSLFLFAAF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]
BLAST of CSPI03G46250 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 5.0e-37
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME+VEAE+KDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRAT HEQAKERKML KTV D
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKIQLARER+RNKRIKLCGLMEFVLQLLLVISLSSL LF AF
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAF 102

[Close]
BLAST of CSPI03G46250 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-28
Identity = 80/102 (78.43%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME VEAE++DEAMR SKTA RCAKAAFL+SS KS QNR LRA+V EQAKE++ L K V D
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKI+LA ER RNKRIKLCGLMEFVLQLLLVISLSS FLF AF
Sbjct: 61  LKIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAF 101

[Close]
BLAST of CSPI03G46250 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-27
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME VEAE++DEAMR S+TA RCAKAAF+LSSLKSSQN  LRATV+E  KE++ L KT+ D
Sbjct: 1   MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LK++LARER+RNKRIKLCGLMEFVLQ+LLVI+LSS F F AF
Sbjct: 61  LKVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAF 101

[Close]
BLAST of CSPI03G46250 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 78/102 (76.47%), Postives = 87/102 (85.29%), Query Frame = 0 

Query: 1   MEDVEAETKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVED 60
           ME VEAE++DEAMR SKTA RCAKAAFL+SS KS QNR LRA+V E+AKE++ L K V D
Sbjct: 1   MEGVEAESRDEAMR-SKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGD 60

Query: 61  LKIQLARERMRNKRIKLCGLMEFVLQLLLVISLSSLFLFAAF 103
           LKI+LA ER RN+RIKLCGLMEFVLQLLLVISLSS FLF AF
Sbjct: 61  LKIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAF 101

[Close]
BLAST of CSPI03G46250 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0 

Query: 8  TKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKERKMLGKTVEDLKIQLAR 67
          +KDE  R   TAIRCA+A  LL SL SS+         E+ + R    + +EDL+ +L  
Sbjct: 3  SKDEFSR-DLTAIRCARATMLLYSLASSRTIDSAGEKQEKGETR----REIEDLRRKLTM 62

Query: 68 ERMRNKRIKLCGLMEFVLQLLLVISLSSLFL 99
           +++  RIKLCGLME +L + LV+ LS+ FL
Sbjct: 63 VKIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

The following BLAST results are available for this feature:
BLAST of CSPI03G46250 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G46250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJY16.7e-4095.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1[more]
A0A5D3E7E02.4e-3792.16Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1FJM54.5e-2878.43uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459... [more]
A0A6J1C9201.3e-2774.51uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A6A1UUX91.4e-1653.47Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G028350 PE=4 SV=1[more]
BLAST of CSPI03G46250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652624.11.4e-3995.10uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ... [more]
KAA0038606.15.0e-3792.16putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31... [more]
XP_022940284.19.4e-2878.43uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar... [more]
XP_022138206.12.7e-2774.51uncharacterized protein LOC111009432 [Momordica charantia][more]
KAG7031715.14.7e-2776.47hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CSPI03G46250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78172.12.0e-0742.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G46250.1CSPI03G46250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane