CSPI03G45880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G45880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 39282256 .. 39282503 (-)
RNA-Seq Expression	CSPI03G45880
Synteny	CSPI03G45880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACAAAGGCGGAGTGAGAAGTTACCTGTTGGGGACCAAGGTTAGCTTGGTGATTGCATAATGTGGAAGAGAAAAACCTGCAATCCATCGCAGCCATTGAAGAAAACAGAGTGAAAGATGAAACAGGAAGGAAGTTGCCTGGTTTTCTGGGAAGCAAGGAAGGAAGCGAGGATTAA

mRNA sequence

ATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACAAAGGCGGAGTGAGAAGTTACCTGTTGGGGACCAAGAGAAAAACCTGCAATCCATCGCAGCCATTGAAGAAAACAGAGTGAAAGATGAAACAGGAAGGAAGTTGCCTGGTTTTCTGGGAAGCAAGGAAGGAAGCGAGGATTAA

Coding sequence (CDS)

ATGAGAGGATTAAACAGAGAGAAGCTACATTGTACTGCAACTATCTGTAAATGCCCGAAAACGACCTTCGATTTACAAAGGCGGAGTGAGAAGTTACCTGTTGGGGACCAAGAGAAAAACCTGCAATCCATCGCAGCCATTGAAGAAAACAGAGTGAAAGATGAAACAGGAAGGAAGTTGCCTGGTTTTCTGGGAAGCAAGGAAGGAAGCGAGGATTAA

Protein sequence

MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQEKNLQSIAAIEENRVKDETGRKLPGFLGSKEGSED*

Homology

[Close]

BLAST of CSPI03G45880 vs. ExPASy TrEMBL
Match: A0A0A0LET3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894460 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 64/72 (88.89%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQEKNLQSIAAIEENRVKDETGRKL 60
          MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ        AIEENRVKDETGRKL
Sbjct: 1  MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ--------AIEENRVKDETGRKL 60

Query: 61 PGFLGSKEGSED 73
          PGFLGSKEGSED
Sbjct: 61 PGFLGSKEGSED 64

[Close]

BLAST of CSPI03G45880 vs. NCBI nr
Match: KGN60298.1 (hypothetical protein Csa_001789 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 2.8e-26
Identity = 64/72 (88.89%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQEKNLQSIAAIEENRVKDETGRKL 60
          MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ        AIEENRVKDETGRKL
Sbjct: 1  MRGLNREKLHCTATICKCPKTTFDLQRRSEKLPVGDQ--------AIEENRVKDETGRKL 60

Query: 61 PGFLGSKEGSED 73
          PGFLGSKEGSED
Sbjct: 61 PGFLGSKEGSED 64

The following BLAST results are available for this feature:

BLAST of CSPI03G45880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G45880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LET3	1.4e-26	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894460 PE=4 SV=1	[more]

BLAST of CSPI03G45880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60298.1	2.8e-26	88.89	hypothetical protein Csa_001789 [Cucumis sativus]	[more]

BLAST of CSPI03G45880 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G45880.1	CSPI03G45880.1	mRNA