CSPI03G45800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G45800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	hydroxyproline-rich glycoprotein family protein
Location	Chr3: 39200159 .. 39200903 (+)
RNA-Seq Expression	CSPI03G45800
Synteny	CSPI03G45800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATTGAAAGAAAACCCATTTAGAATAATAATAAATAGAAAGAGAAGAAAAGAGGGTTTAATTTAATATAAAGAAATTTGTGTGCATAAATAAAAATGGTTGGGAGTGGAAATGAAGAAAAGAAATTGAAATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTTGTTTTCTTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAACAACCAGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTCAATTAATTAAATACTGCTTTTTTTTTTCTTCTTTTTAATTATAAGGTTTTTGTGCATATATATTATATTACAATATATAGATGTGC

mRNA sequence

GTAAAATTGAAAGAAAACCCATTTAGAATAATAATAAATAGAAAGAGAAGAAAAGAGGGTTTAATTTAATATAAAGAAATTTGTGTGCATAAATAAAAATGGTTGGGAGTGGAAATGAAGAAAAGAAATTGAAATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTCAATTAATTAAATACTGCTTTTTTTTTTCTTCTTTTTAATTATAAGGTTTTTGTGCATATATATTATATTACAATATATAGATGTGC

Coding sequence (CDS)

ATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Protein sequence

MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPSQSISDNP*

Homology

[Close]

BLAST of CSPI03G45800 vs. ExPASy Swiss-Prot
Match: Q9LSK9 (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL
Match: A0A5D3E545 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005320 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.1e-59
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA----PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 125
           P P SPA    PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 126 VVQKPSQSISDN 127
           VVQKPSQSISD+
Sbjct: 121 VVQKPSQSISDS 132

[Close]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL
Match: A0A1S3CQS4 (uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.1e-59
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA----PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 125
           P P SPA    PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 126 VVQKPSQSISDN 127
           VVQKPSQSISD+
Sbjct: 121 VVQKPSQSISDS 132

[Close]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL
Match: A0A0A0LE40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL
Match: A0A6J1F906 (uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC111443410 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.3e-48
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 66  PQPQSPA---PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQ 125
           P P++PA   PDK SPIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  P-PETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

[Close]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL
Match: A0A6J1IEI5 (uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC111476516 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.8e-48
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHSDHLHPSI 60

Query: 66  PQPQSPA---PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQ 125
           P P++PA   PDK SPIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  P-PETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

[Close]

BLAST of CSPI03G45800 vs. NCBI nr
Match: XP_008466113.1 (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 uncharacterized protein E6C27_scaffold92G001760 [Cucumis melo var. makuwa] >TYK31243.1 uncharacterized protein E5676_scaffold455G005320 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA----PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 125
           P P SPA    PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 126 VVQKPSQSISDN 127
           VVQKPSQSISD+
Sbjct: 121 VVQKPSQSISDS 132

[Close]

BLAST of CSPI03G45800 vs. NCBI nr
Match: XP_038899315.1 (uncharacterized protein At5g65660-like [Benincasa hispida])

HSP 1 Score: 219.2 bits (557), Expect = 2.1e-53
Identity = 110/130 (84.62%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA---PDKVSPIHS-IWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVV 125
           P PQ+ A   PDK+SPIH+ IW+ENRPQS+SVLMPGDEVPRFIAMACP     ALVEIVV
Sbjct: 61  P-PQTAAFSPPDKISPIHTKIWRENRPQSLSVLMPGDEVPRFIAMACPPCAAAALVEIVV 120

Query: 126 QKPSQSISDN 127
           QKPSQS  D+
Sbjct: 121 QKPSQSFPDS 129

[Close]

BLAST of CSPI03G45800 vs. NCBI nr
Match: KAG6591711.1 (hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024594.1 hypothetical protein SDJN02_13412 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.0 bits (515), Expect = 1.6e-48
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 66  PQPQSPA---PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQ 125
           P P++PA   PDK SPIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  P-PETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

[Close]

BLAST of CSPI03G45800 vs. NCBI nr
Match: XP_022936981.1 (uncharacterized protein At5g65660-like [Cucurbita moschata])

HSP 1 Score: 202.2 bits (513), Expect = 2.7e-48
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 66  PQPQSPA---PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQ 125
           P P++PA   PDK SPIH+IWKENRP+S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  P-PETPAFSPPDKFSPIHTIWKENRPESLTVLMPGDEVPRFIAMACPPCGAAPLVEIVIQ 120

[Close]

BLAST of CSPI03G45800 vs. NCBI nr
Match: XP_023536259.1 (uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.1 bits (510), Expect = 5.9e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYD+REAQD ASLSFPVGLVLLLTFLFCMCCFF CCLHWEKLRS LGCPDH  H HP I
Sbjct: 1   MEYDDREAQDSASLSFPVGLVLLLTFLFCMCCFFSCCLHWEKLRSILGCPDHADHRHPSI 60

Query: 66  PQPQSPA---PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-----ALVEIVVQ 125
           P P++PA   PDK SPIH+IWKENRP S++VLMPGDEVPRFIAMACP      LVEIV+Q
Sbjct: 61  P-PETPAFSPPDKFSPIHTIWKENRPASLTVLMPGDEVPRFIAMACPPCVAAPLVEIVIQ 120

[Close]

BLAST of CSPI03G45800 vs. TAIR 10
Match: AT5G65660.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

The following BLAST results are available for this feature:

BLAST of CSPI03G45800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSK9	4.8e-08	37.93	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana OX=3702 GN=At5g65660 P...	[more]

BLAST of CSPI03G45800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E545	8.1e-59	87.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQS4	8.1e-59	87.12	uncharacterized protein At5g65660-like OS=Cucumis melo OX=3656 GN=LOC103503633 P...	[more]
A0A0A0LE40	2.6e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G893400 PE=4 SV=1	[more]
A0A6J1F906	1.3e-48	79.53	uncharacterized protein At5g65660-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IEI5	3.8e-48	79.53	uncharacterized protein At5g65660-like OS=Cucurbita maxima OX=3661 GN=LOC1114765...	[more]

BLAST of CSPI03G45800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466113.1	1.7e-58	87.12	PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo] >KAA0038642.1 u...	[more]
XP_038899315.1	2.1e-53	84.62	uncharacterized protein At5g65660-like [Benincasa hispida]	[more]
KAG6591711.1	1.6e-48	78.91	hypothetical protein SDJN03_14057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936981.1	2.7e-48	79.53	uncharacterized protein At5g65660-like [Cucurbita moschata]	[more]
XP_023536259.1	5.9e-48	79.53	uncharacterized protein At5g65660-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI03G45800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65660.1	3.4e-09	37.93	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34291:SF7	PROTEIN, PUTATIVE-RELATED	coord: 10..123
IPR037699	Uncharacterized protein At5g65660-like	PANTHER	PTHR34291	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 10..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G45800.1	CSPI03G45800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane