CSPI03G45130 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G45130
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA-binding protein 38
Location	Chr3: 38636187 .. 38640315 (+)
RNA-Seq Expression	CSPI03G45130
Synteny	CSPI03G45130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGAGGGGGAAGGCATTATTTTGAAGGGGAGAGTGGAGATTTTTAATGGTAAGACAGAGAAGCAATTCTCTCACTCACCTGTCATCTCCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTTTTTCTTTTCTATCTAAATATATTATATCAACCACCACCAACGGCTTAAACCGTGTGTGCCACTCTCATCACCATTTTTTTTTTTTTCTCCTTCAATTCTTCTTTCTTTTTCCTCTACAACAATATGGACTTTCCCCTTACTACTCCAACAAAATCAATTCAATTCCATTGAGAACAACCACACACAAATTCCCATTTTGGTTTAATTACTGGTTTTTACTTTATATATATATATATATATTTGATGCAGCAGATCAAGAATAATAACAGAGAAAATCATCATCATCAACAACAACAACAACAAGAAGTAGAAACAGAAAGAGGAGGTTTGTTTTCTAGGGCGGCATATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTAAGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCTTTCTTAGACGTGATTTGTTTGAGTTATTACAGGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGTTGCTCATTTACTTTAATTATTTACATATTTGTTATGAATATTGTTGGTTTGGTTTTGCTTTTCTTAATAAAAATTGTTTTGTATTTAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGGTTAGTTCATTTTATTATTACTATTATTCATTTGTAAAACAATAAAAGTCTTATACATTGATTACCATTAAACTAAAATTACTTTAGTCAAAGTTTATTTAGAAGTAGGGTATTGAAAGTTGAAATTAAAAATCAAATATTGGGATTATTGATTGTATAAAGAGAAGATTATGTGAGTGTATGAATTGGGTGTATGATGAGAGAAACACATGGACTCATGTGGGGCTTTCATGCAACCTTTTCCTTATCTTAATAATTATTATAAGTGCATATACATCATCAGTATAATTCTTGTTTCACCTCTTATTTATAATATATACACACATAGTAACTTTCTAAAGTAAATGGTAAATTTTCCATCACCGGAGAAATTTAATTTTCAGTGAAAGTGGTCCAAACCATCACTAGAAAATTTTCATTATTAACTTTGTTTGTTGGTTGTCATGAACGATAACATTAAAATGCTGTTGTTTTTCTGAACCCAGATAATATACAGCAGTTTTTCTTTTTTCGTAGACTTTGTTTATTCAAACACATTTGGAACGTTGAGTTTGTTAATATAGAGATTAATTAGTGTTGATCTTAGTTAAAACAAGCTTAGAAAGAAACGAAAGAACAGTAGTGTGAGTTATTGATATTTCATTTCCTGAGGTTGTGAGGTTTGAATAAGAAAGTTTGAGTTGTTGTGAGTTATTGATTTTTGAGCTATTATCCTCAATGTGGTCATAATGAGTCAAAAACTGTAATCACTGTGATTTGTCAGCCAATTTTTTTTACCTGAACTACTGACAATGTAGAAAGAAACCAAACAGCTCCTCCCCCACCCACCAATCAACAAACCCAAAACCACTACACATCTGTACAACTGACCCACCAAACAGAAATCATGCACATACTTCAATATTATTTTACTAATCAATTTGGGTTTTGTTTTGTTTTGTTTTGTTTTGCAGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGTTAGCCTCTTTTCTTTTCCTCTTATAAACATTTTTCATTGAGAACAGTTGGTGATGAGCATGAACCATATAACTTACAGAAAATGGTTGTATATATTTGAACAGGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAATCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGGTAACTTTATTATTCAAAATTCTTGAAATTATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATACCTGACAGGAATAGGATAAATAGAGATAAGTGGGGGAGAGGTAGGGGGCCATGTGGGTAAAGGGGAAGGGCATGTGAGTGAGCTGTCTTTGGGCCAACGAAAATGGTTGAAAGGAAATTGATGACAGAGTAGCATTTCCATTATATAAAGACAGCTACTGCCACTCTCACCTGCATTTCCATGTGTGTGCCTTCATTTCTCTTTTCCTAAACCCCCCCTCCTATATTTTACTCTTTCTCTAAACTAACCCCCACCTTCTTTCTCTCTTTTCCTTTTCACTGTTTCTCTTATTTACCACTAGATTAACCCATGAAGTTTTCCACTTATCCCCTCATTATTCATAACATCCTATCCTATCATATGAATATTATGATTTTGGTAAAAAGGAAAAAAGGTTAATGATGTATTGAGTTTTGCCATTTTAGTAGAGTAGACCCAAATGTAATATAGATAGCTGTGCCCAGCTGTGTTTGAAAATGGACCACCTTCAAATTCCAAAATTTGCAAACCCATTTTTCTTTGCATTCCAAGTTAGGATTTTCCTTTTTCATTTTATTTATGGGATTGTTGATATTAAAAAAAGAAAGGAAAGGAAGAAGTGAATATTGATATTAATTGTGGGTTTCAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGAGAATTAAATTAAAATAATTCAACAAATTTTAAATCAAACCCAATTCCAAATTATTATTATGGAGATAGAAAATTTGTATAAAGTTGATGGATTTGACATTTTATCTTTGAGATCGATCCTCCAATTCTTTTTTCTTTTCTTTCACCCATTTTTATCTCTGCTTTTCG

mRNA sequence

GGGGGAGGGGGAAGGCATTATTTTGAAGGGGAGAGTGGAGATTTTTAATGGTAAGACAGAGAAGCAATTCTCTCACTCACCTGTCATCTCCTATTACATCACCCACCAACCCACTTCTTCCACCTCCCCATCCAGCAAATTAGAGTTTGCACCTGTCGGATTTTCTTTTTCTTTTCTATCTAAATATATTATATCAACCACCACCAACGGCTTAAACCGTGTGTGCCACTCTCATCACCATTTTTTTTTTTTTCTCCTTCAATTCTTCTTTCTTTTTCCTCTACAACAATATGGACTTTCCCCTTACTACTCCAACAAAATCAATTCAATTCCATTGAGAACAACCACACACAAATTCCCATTTTGGTTTAATTACTGGTTTTTACTTTATATATATATATATATATTTGATGCAGCAGATCAAGAATAATAACAGAGAAAATCATCATCATCAACAACAACAACAACAAGAAGTAGAAACAGAAAGAGGAGGTTTGTTTTCTAGGGCGGCATATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAATCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGAGAATTAAATTAAAATAATTCAACAAATTTTAAATCAAACCCAATTCCAAATTATTATTATGGAGATAGAAAATTTGTATAAAGTTGATGGATTTGACATTTTATCTTTGAGATCGATCCTCCAATTCTTTTTTCTTTTCTTTCACCCATTTTTATCTCTGCTTTTCG

Coding sequence (CDS)

ATGGCTAATTATCCACATTACCGATCTCAATTTGGAGATACAACTTTCACTAAAGTCTTTGTTGGTGGTCTTGCTTGGGAAACTCCCACTGACCAAATGCAAACTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTTATTATCACTGATAAAAACACCTCCAAATCTAAAGGATATGGATTCGTCACATTTCGTGACCCTGAATCTGCAAGAAGAGCTTGTGCCAATCCTAACCCAATAATCGATGGAAGACGTGCAAATTGTAACATTGCTGCATTGGGTCGACCTCGGCCTTCCCCTCCACGAGGACGAGGGCAAAGTAGTGTAAATCCATATCAAGGAAGTACAATGCAGGCACAAGCAACACCATCCTATGGTGGAGTCCCGTCCCCGTTAAACCAGCCACCCATTCCTCCGCCGCCTCCGCCTGCACCCCCCGTCGTATATTCACCATACGGATACCCAGCTTACAGTCCAGATTATGGGTACCACCACCACCATCAAGCAGTGTACAATCCACAAGTTCAACAGCCACAAATGTATCAACAAACTCCATATTATTATGGTTATTCATCAAGAGGAACAACATTCCCAAATCCTTCACAATCACATCAACATCCTCGATTATTACTACCTCCTTCATATGTCTACTACCCTCCCCCTCCCCCTCCTCCTCAATTTGAACCTTCTTCCTTCAATTATCCCCCTCAATCTCAACCACAGATAATTCGACACCGTTTTTCCTCAACAGATTCACAGACATCACAACAAACTCCAACAGAAGCTGAAGCTGGAGGTGTTACTTCTGATATTCAAAGTCCAACCTCTTGA

Protein sequence

MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQSQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS*

Homology

[Close]

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-22
Identity = 97/247 (39.27%), Postives = 126/247 (51.01%), Query Frame = 0


Query: 11  FGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPES 70
           FGDT  TKVFVGGLAW+T  + M  +F ++GDILEAVII+DK T +SKGYGFVTF+D ++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 71  ARRACANPNPIIDGRRANCNIAAL-GRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGG- 130
           A RAC +  PII+GRRANCN+A+L GR R SP      +  +P QG     +ATP + G 
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSP------TMTSPQQGPKNGNRATPPHVGN 130

Query: 131 -----VPSPLNQPPIPPPPPPAPPVVYSPYGYPA--------YSPDYGY--HHHHQAVYN 190
                 PS             A P     YGYP+        ++   GY    +    Y 
Sbjct: 131 HSQWYYPSGFTNQQHQQQNHQAVPF----YGYPSAYVAPNMTFNQKVGYVGGTYMNGYYA 190

Query: 191 PQVQQPQMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQF-EPSS 240
               QPQ   Q  YY+ +   G      + S   P   + P +       P P F +P S
Sbjct: 191 QMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSFSKPLS 247

[Close]

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-21
Identity = 80/180 (44.44%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSP 132
           RAC +PNPIIDGR+AN N+A LG    S   G    ++   Q      Q T  YG  P  
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAIGVQQLHPTLIQRT--YGLTPHY 149

Query: 133 LNQPPIPPPP---PPAP-PVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPY 188
           +  P I  P    P AP P + SPY  Y   SP Y  +             P  Y Q PY
Sbjct: 150 IYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAYAQY------------PPATYDQYPY 192

[Close]

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 79/180 (43.89%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTTFTK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 73  RACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQATPSYGGVPSP 132
           RAC +PNPIIDGR+AN N+A LG    S   G    +V   Q      Q T  YG  P  
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRSLQTG---FAVGVQQLHPTLIQRT--YGLTPHY 147

Query: 133 LNQPPIPPP----PPPAPPVVYSPY-GYPAYSPDYGYHHHHQAVYNPQVQQPQMYQQTPY 188
           +  P I  P    P    P + SPY  Y   SP Y  +             P  Y Q PY
Sbjct: 148 IYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQY------------PPATYDQYPY 190

[Close]

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-20
Identity = 67/145 (46.21%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    ++ YFE FGDI EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  RACANPNPIIDGRRANCNIAALG-RPR-PSPPRGRGQSSVNPYQGSTMQAQATPSYGGVP 132
           RAC +PNPIIDGR+AN N+A LG +PR   P    G   ++P      +    P++   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHP--ALIQRPFGIPAHYVYP 126

Query: 133 SPLNQP--PIPPPPPPAPPVVYSPY 154
               QP   IP   P A     +PY
Sbjct: 127 QAFVQPGVVIPHVQPTAAAASTTPY 149

[Close]

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.1e-20
Identity = 66/145 (45.52%), Postives = 86/145 (59.31%), Query Frame = 0


Query: 13  DTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDPESAR 72
           DTT+TK+FVGGL + T    ++ YFE FG+I EAV+ITD+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  RACANPNPIIDGRRANCNIAALG-RPR-PSPPRGRGQSSVNPYQGSTMQAQATPSYGGVP 132
           RAC +PNPIIDGR+AN N+A LG +PR   P    G   ++P      +    P++   P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHP--ALIQRPFGIPAHYVYP 126

Query: 133 SPLNQP--PIPPPPPPAPPVVYSPY 154
               QP   IP   P A     +PY
Sbjct: 127 QAFVQPGVVIPHVQPTAAAASTTPY 149

[Close]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL
Match: A0A0A0LGV2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.5e-155
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA
Sbjct: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180
           QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ
Sbjct: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180

Query: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQSQ 240
           MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQ Q
Sbjct: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240

Query: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS
Sbjct: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL
Match: A0A6J1DIJ5 (RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.9e-105
Identity = 217/284 (76.41%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFV
Sbjct: 3   YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGSTM  QAT
Sbjct: 63  TFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--QAT 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
           PSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY  H QAVYNPQVQQPQ Y 
Sbjct: 123 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 182

Query: 184 QTPYYYGYS--SRGTTFPN-PSQSHQHPRLLLPPSYVYYPPPPPPP--QFEPSS--FNYP 243
           Q+PY YGYS  S   TF N P QSH H    +PPSY+YYP   P P  QFEPSS   NYP
Sbjct: 183 QSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEPSSSFSNYP 242

Query: 244 PQSQPQIIRHRFSSTDSQTSQQTPT------EAEAGGVTSDIQS 275
           P   P ++RHRFSSTDSQTSQQTPT      EAEAG VTS+  S
Sbjct: 243 P---PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPS 276

[Close]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL
Match: A0A6J1IJV9 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.8e-99
Identity = 205/274 (74.82%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182

Query: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242

Query: 244 QSQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 272
              P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 254

[Close]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL
Match: A0A6J1F8X9 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.9e-97
Identity = 204/273 (74.73%), Postives = 218/273 (79.85%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
           PSY GVP PLNQPP+PPPP   PPVVYSPYGYP Y+ DYGYHH H        Q  Q   
Sbjct: 123 PSYSGVPPPLNQPPLPPPP---PPVVYSPYGYPTYTTDYGYHHQH-------YQHHQQPV 182

Query: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPP---PPPPQFEPSSFNYPPQ 243
             PY+YGYS  S    FP+PSQSHQ PR+ +PP YVYYPPP       QFE  SF+YPP 
Sbjct: 183 YNPYFYGYSLQSPRGAFPSPSQSHQ-PRVAVPP-YVYYPPPAAAAAAAQFE-GSFSYPP- 242

Query: 244 SQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 272
             P +IRHRF+STDSQTSQQTP EAEA  VTS+
Sbjct: 243 --PPLIRHRFASTDSQTSQQTPPEAEAEAVTSE 257

[Close]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL
Match: A0A6J1J2C6 (RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481192 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.9e-85
Identity = 187/274 (68.25%), Postives = 206/274 (75.18%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPT++M+ YFE+FGDILEAVIITDK TSKSKGYGFV
Sbjct: 92  YPHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEEFGDILEAVIITDKITSKSKGYGFV 151

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESA+RAC NPNPIIDGRRANCNIAALGRPRPSPPRGR QS VN    S +Q    
Sbjct: 152 TFRDPESAKRACLNPNPIIDGRRANCNIAALGRPRPSPPRGRHQSGVNVQSASPLQ---- 211

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
                    LN PP+PPP    PPVVYSPYGYP+Y+ DY Y H  Q VYNPQ++ PQ YQ
Sbjct: 212 ---------LNLPPLPPP----PPVVYSPYGYPSYNSDYNY-HQQQTVYNPQLRPPQFYQ 271

Query: 184 QTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQSQPQI 243
           Q+PY+YGYS    TFP PS SHQH    LPPSY+YY P  PP QFEP SFNYP   Q  +
Sbjct: 272 QSPYFYGYS---RTFPIPSPSHQH---RLPPSYMYY-PTLPPAQFEP-SFNYP---QAPL 331

Query: 244 IRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           + HRFS  DSQTS QT  +AEAG      +SPT+
Sbjct: 332 VSHRFSPADSQTS-QTCQQAEAGAG----ESPTT 331

[Close]

BLAST of CSPI03G45130 vs. NCBI nr
Match: XP_004136431.1 (RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_001640 [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 9.3e-155
Identity = 276/277 (99.64%), Postives = 276/277 (99.64%), Query Frame = 0


Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY
Sbjct: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA
Sbjct: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180
           QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ
Sbjct: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQ 180

Query: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQSQ 240
           MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQ Q
Sbjct: 181 MYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQPQ 240

Query: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS
Sbjct: 241 PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 277

[Close]

BLAST of CSPI03G45130 vs. NCBI nr
Match: XP_038897135.1 (RNA-binding protein 38 [Benincasa hispida])

HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123
Identity = 241/281 (85.77%), Postives = 250/281 (88.97%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPTD M+TYFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDLMRTYFEQFGDILEAVIITDKNTSKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRD ESARRACAN NPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQ QAT
Sbjct: 63  TFRDAESARRACANANPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQVQAT 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
           PSYGGVPSPLNQPP+PPPPPP PP+VYSPYGYPAYSPDYGY  HHQAVYNPQVQQPQ+YQ
Sbjct: 123 PSYGGVPSPLNQPPLPPPPPPPPPIVYSPYGYPAYSPDYGY-QHHQAVYNPQVQQPQIYQ 182

Query: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPP-----PPQFEPSSFNYP 243
           Q+PY+YGYS  S   TF NPSQSH HPRL+LPPSYVYYPPP P       QFE +S NYP
Sbjct: 183 QSPYFYGYSLQSPRGTFHNPSQSH-HPRLVLPPSYVYYPPPSPTAAAAAAQFEAASINYP 242

Query: 244 PQSQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
           P     +IRHRFSSTDSQTSQQTPTE EAGGVTSD QSPTS
Sbjct: 243 P-----LIRHRFSSTDSQTSQQTPTEGEAGGVTSD-QSPTS 275

[Close]

BLAST of CSPI03G45130 vs. NCBI nr
Match: XP_022152706.1 (RNA-binding protein 38 [Momordica charantia])

HSP 1 Score: 392.1 bits (1006), Expect = 3.9e-105
Identity = 217/284 (76.41%), Postives = 233/284 (82.04%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           Y HYRSQFGDTTFTKVFVGGLAWETPT++M+ YFEQFG+ILEAVIITDKNT+KSKGYGFV
Sbjct: 3   YAHYRSQFGDTTFTKVFVGGLAWETPTEEMRRYFEQFGEILEAVIITDKNTAKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRDPESARRACANPNP+IDGRRANCNIAALGRPRPSPPRGR Q  +NPYQGSTM  QAT
Sbjct: 63  TFRDPESARRACANPNPVIDGRRANCNIAALGRPRPSPPRGRAQGGINPYQGSTM--QAT 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
           PSY GVP+PLNQPP+PP PPP PPVVYSPYGYP+YSPDYGY  H QAVYNPQVQQPQ Y 
Sbjct: 123 PSYSGVPAPLNQPPLPPAPPPPPPVVYSPYGYPSYSPDYGY--HPQAVYNPQVQQPQYYH 182

Query: 184 QTPYYYGYS--SRGTTFPN-PSQSHQHPRLLLPPSYVYYPPPPPPP--QFEPSS--FNYP 243
           Q+PY YGYS  S   TF N P QSH H    +PPSY+YYP   P P  QFEPSS   NYP
Sbjct: 183 QSPYLYGYSVQSPRATFSNAPPQSHHH---RVPPSYLYYPAAAPSPHAQFEPSSSFSNYP 242

Query: 244 PQSQPQIIRHRFSSTDSQTSQQTPT------EAEAGGVTSDIQS 275
           P   P ++RHRFSSTDSQTSQQTPT      EAEAG VTS+  S
Sbjct: 243 P---PPLLRHRFSSTDSQTSQQTPTEAEAEAEAEAGAVTSESPS 276

[Close]

BLAST of CSPI03G45130 vs. NCBI nr
Match: XP_022975652.1 (RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 1.6e-98
Identity = 205/274 (74.82%), Postives = 219/274 (79.93%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTT TKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 3   YPHYRSQFGDTTLTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYH----HHHQAVYNPQVQQP 183
           PSY GVP PLNQPP+PPP    PPVVYSPYGYP Y+PDYGYH    HH Q VYN      
Sbjct: 123 PSYSGVPPPLNQPPLPPP----PPVVYSPYGYPTYTPDYGYHQHYQHHQQPVYN------ 182

Query: 184 QMYQQTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPP 243
                 PY+YGYS  S    FP PSQSHQ PR+ +PP YVYYPPP    Q+E  SF+YPP
Sbjct: 183 ------PYFYGYSVQSPRGAFPIPSQSHQ-PRVAVPP-YVYYPPPAAAAQYE-GSFSYPP 242

Query: 244 QSQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 272
              P +IRHRF+STDSQTSQQTPTEAEA  VTS+
Sbjct: 243 -PPPPLIRHRFASTDSQTSQQTPTEAEAEAVTSE 254

[Close]

BLAST of CSPI03G45130 vs. NCBI nr
Match: KAG6591668.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366.3 bits (939), Expect = 2.3e-97
Identity = 204/273 (74.73%), Postives = 218/273 (79.85%), Query Frame = 0


Query: 4   YPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYGFV 63
           YPHYRSQFGDTTFTKVFVGGLAWETPTD+M+ YFEQFGDILEAVIITDKNTSKSKGYGFV
Sbjct: 3   YPHYRSQFGDTTFTKVFVGGLAWETPTDEMRRYFEQFGDILEAVIITDKNTSKSKGYGFV 62

Query: 64  TFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQAT 123
           TFRD ESARRACANPNP+IDGRRANCNIAA+GRPRPSPPRGRGQ  VNPYQGSTM  QA 
Sbjct: 63  TFRDAESARRACANPNPMIDGRRANCNIAAMGRPRPSPPRGRGQGGVNPYQGSTM--QAA 122

Query: 124 PSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQPQMYQ 183
           PSY GVP PLNQPP+PPPP   PPVVYSPYGYP Y+PDYGYHH H        Q  Q   
Sbjct: 123 PSYSGVPPPLNQPPLPPPP---PPVVYSPYGYPTYTPDYGYHHQH-------YQHHQQPV 182

Query: 184 QTPYYYGYS--SRGTTFPNPSQSHQHPRLLLPPSYVYYPPP---PPPPQFEPSSFNYPPQ 243
             PY+YGYS  S    FP+PSQSHQ PR+ +PP YVYYPPP       QFE  SF+YP  
Sbjct: 183 YNPYFYGYSLQSPRGAFPSPSQSHQ-PRVAVPP-YVYYPPPAAAAAAAQFE-GSFSYP-- 242

Query: 244 SQPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSD 272
             P +IRHRF+STDSQTSQQTP EAEA  VTS+
Sbjct: 243 --PPLIRHRFASTDSQTSQQTPPEAEAEAVTSE 256

[Close]

BLAST of CSPI03G45130 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 218.0 bits (554), Expect = 9.5e-57
Identity = 136/253 (53.75%), Postives = 160/253 (63.24%), Query Frame = 0


Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           M+   +YRS FGDTT+TKVFVGGLAWETPTD+M+ YFEQFG+ILEAVIITDKNT KSKGY
Sbjct: 1   MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+      GS  Q 
Sbjct: 61  GFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQY 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYHHHHQAVYNPQVQQP 180
           Q+     G PS       P PP  AP ++Y  YGY  Y+PD +GY   HQA+YN Q+QQ 
Sbjct: 121 QS-----GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY---HQALYNTQLQQA 180

Query: 181 QMYQQ---------------------TPYYYGYSSRGTTFP-----------NPSQSHQH 221
           Q YQQ                     +PYYYGYS +    P           NP Q H H
Sbjct: 181 QYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNP-QQHHH 236

[Close]

BLAST of CSPI03G45130 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.0e-54
Identity = 150/296 (50.68%), Postives = 180/296 (60.81%), Query Frame = 0


Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           M+   +YRS FGDTT+TKVFVGGLAWETPTD+M+ YFEQFG+ILEAVIITDKNT KSKGY
Sbjct: 1   MSQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQA 120
           GFVTFR+ +SA RA A+PNP+IDGR+ANCNIA+ GRPRPSPPRGRGQ+      GS  Q 
Sbjct: 61  GFVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQT------GSPSQY 120

Query: 121 QATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPD-YGYHHHHQAVYNPQVQQP 180
           Q+     G PS       P PP  AP ++Y  YGY  Y+PD +GY   HQA+YN Q+QQ 
Sbjct: 121 QS-----GGPSTYTGMAAPLPPAAAPQLMYPSYGY-TYNPDQFGY---HQALYNTQLQQA 180

Query: 181 QMYQQTPYYYG------YSSRGTTFPNP---SQSHQHPRLLLPPSYVYYPPPPPPPQ--- 240
           Q YQQ    YG       SS  T  P+P     S Q PR  +P  + ++ P P  PQ   
Sbjct: 181 QYYQQQQQLYGGGATSPSSSGATIMPSPYYYGYSLQAPR--VPYQHHHHLPQPYNPQQHH 240

Query: 241 ----FEPSSFNYPPQSQ--PQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPTS 278
                 PS   YP  S   P +     SST+S+   Q    AE    T+  +  TS
Sbjct: 241 HQRFSSPSFLVYPSNSSFAPPLQGVLSSSTESEAVPQQVPAAEGEATTTAPEITTS 279

[Close]

BLAST of CSPI03G45130 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 205.7 bits (522), Expect = 4.9e-53
Identity = 134/277 (48.38%), Postives = 165/277 (59.57%), Query Frame = 0


Query: 1   MANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGY 60
           M+N  +YRS FGDTT TKVFVGGLAWETPTD+M+ YF+QFG+ILEAVIITDK T KSKGY
Sbjct: 1   MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60

Query: 61  GFVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQ-SSVNPYQGSTMQ 120
           GFVTFRD +SA RA A+PNP+IDGR+ANCNIA+ GRPRPS PRGRGQ  S + YQG    
Sbjct: 61  GFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGG--- 120

Query: 121 AQATPSYGGVPSPLNQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQVQQP 180
                SY G+ +P+ Q         A  ++Y  YGY  Y+ +YGY   HQA+YN Q+QQ 
Sbjct: 121 --GQSSYTGMAAPVQQ-------AAAAQLMYPSYGY-TYNSEYGY---HQALYNAQLQQA 180

Query: 181 QMYQQTPYYYGYSSRGTTFPNPSQSHQHPRLLLPPSYVYYPPPPPPPQFEPSSFNYPPQS 240
           Q YQQ  Y  G    G T P+ S        ++P  Y Y   P P P             
Sbjct: 181 QYYQQQMYGGG----GATSPSSSN-------IMPSPYYYLQAPSPRPYL---------HH 240

Query: 241 QPQIIRHRFSSTDSQTSQQTPTEAEAGGVTSDIQSPT 277
           Q     H       Q  Q+ P+ +      S++++PT
Sbjct: 241 QQHYQYHHHQQQQQQQQQRLPSASSYLIYPSNVEAPT 241

[Close]

BLAST of CSPI03G45130 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-35
Identity = 112/261 (42.91%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 2   ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYG 61
           + + +  S FGDTTFTKVFVGGLAWET ++ ++ +F+Q+GDILEAV+ITDKNT +SKGYG
Sbjct: 9   SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68

Query: 62  FVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQ 121
           FVTFRDPE+ARRAC +P PIIDGRRANCN+A+LGR RP       Q +V P+    ++  
Sbjct: 69  FVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPHAPGRVR-P 128

Query: 122 ATPSYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQV 181
            +P  G V SP      + P   PP       V  PYG   Y PDY Y    Q  Y P +
Sbjct: 129 PSPYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQSQGFYGPYM 188

Query: 182 QQ--------PQMYQQTPYYYGYSSR---GTTFPNPSQSHQHP-------RLLLPPSYVY 239
            Q        P       Y YG  S    G       Q + HP           P S + 
Sbjct: 189 GQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQ 248

[Close]

BLAST of CSPI03G45130 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-35
Identity = 112/261 (42.91%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 2   ANYPHYRSQFGDTTFTKVFVGGLAWETPTDQMQTYFEQFGDILEAVIITDKNTSKSKGYG 61
           + + +  S FGDTTFTKVFVGGLAWET ++ ++ +F+Q+GDILEAV+ITDKNT +SKGYG
Sbjct: 9   SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68

Query: 62  FVTFRDPESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSTMQAQ 121
           FVTFRDPE+ARRAC +P PIIDGRRANCN+A+LGR RP       Q +V P+    ++  
Sbjct: 69  FVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPM-----QYAVIPHAPGRVR-P 128

Query: 122 ATPSYGGVPSPL-----NQPPIPPPPPPAPPVVYSPYGYPAYSPDYGYHHHHQAVYNPQV 181
            +P  G V SP      + P   PP       V  PYG   Y PDY Y    Q  Y P +
Sbjct: 129 PSPYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVYPYGVTPYGPDYMY-SQSQGFYGPYM 188

Query: 182 QQ--------PQMYQQTPYYYGYSSR---GTTFPNPSQSHQHP-------RLLLPPSYVY 239
            Q        P       Y YG  S    G       Q + HP           P S + 
Sbjct: 189 GQQYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQ 248

The following BLAST results are available for this feature:

BLAST of CSPI03G45130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	4.3e-22	39.27	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	3.7e-21	44.44	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q62176	1.1e-20	43.89	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
D3Z4I3	3.1e-20	46.21	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q9BX46	9.1e-20	45.52	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]

BLAST of CSPI03G45130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGV2	4.5e-155	99.64	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G889750 PE=4 SV...	[more]
A0A6J1DIJ5	1.9e-105	76.41	RNA-binding protein 38 OS=Momordica charantia OX=3673 GN=LOC111020331 PE=4 SV=1	[more]
A0A6J1IJV9	7.8e-99	74.82	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111475419 PE=4 SV=...	[more]
A0A6J1F8X9	1.9e-97	74.73	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111443164 PE=4 S...	[more]
A0A6J1J2C6	4.9e-85	68.25	RNA-binding protein 38-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114811...	[more]

BLAST of CSPI03G45130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136431.1	9.3e-155	99.64	RNA-binding protein 38 [Cucumis sativus] >KGN60219.1 hypothetical protein Csa_00...	[more]
XP_038897135.1	2.5e-123	85.77	RNA-binding protein 38 [Benincasa hispida]	[more]
XP_022152706.1	3.9e-105	76.41	RNA-binding protein 38 [Momordica charantia]	[more]
XP_022975652.1	1.6e-98	74.82	RNA-binding protein 38-like [Cucurbita maxima] >XP_022975653.1 RNA-binding prote...	[more]
KAG6591668.1	2.3e-97	74.73	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G45130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.2	9.5e-57	53.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.1	2.0e-54	50.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	4.9e-53	48.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.6e-35	42.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.6e-35	42.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..90 e-value: 1.6E-23 score: 94.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..77 e-value: 1.6E-16 score: 59.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..94 score: 16.159025
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..110 e-value: 3.6E-25 score: 90.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..145
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..259
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 17..92 e-value: 5.65615E-44 score: 141.984
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..259
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G45130.1	CSPI03G45130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding