CSPI03G44330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G44330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 37974893 .. 37975301 (-)
RNA-Seq Expression	CSPI03G44330
Synteny	CSPI03G44330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACGTCAAATTGCCCAAGTTAATTAAGCAAACAAAATCAAACTAAGATCCAACCATACCCCACCAAAAAATGATAAGAAAACAAGAATTACGAACTACAGAAAACTTTGTTAATAGAATAACGAACTTCGTTCAGTCAGCGAACACGCAAGCCTGCGGCGGCGGTGAGCCGGAATCCCAAAAAGAGAACCAATTAAAAAATTGGAGCTCTGAACCGCTGAGAGATTGGGTGAATTTGAGAGGAAAAAATCAAAGAGAAAGGCAAGAATGTGAATGTGTGAAGATACAGTTCGAATCGGATCGGTATTTATAGGAACGGCGAAGGCGGGGTTTCGAGAGGCTTCGCAACGCGCGTTTCTCAATGAACGAAAGCGATGCCGTGGAGCTTCCAATGTCGCTATCGGGCTAA

mRNA sequence

GCACGTCAAATTGCCCAAGTTAATTAAGCAAACAAAATCAAACTAAGATCCAACCATACCCCACCAAAAAATGATAAGAAAACAAGAATTACGAACTACAGAAAACTTTGTTAATAGAATAACGAACTTCGTTCAGTCAGCGAACACGCAAGCCTGCGGCGGCGGTGAGCCGGAATCCCAAAAAGAGAACCAATTAAAAAATTGGAGCTCTGAACCGCTGAGAGATTGGGAACGGCGAAGGCGGGGTTTCGAGAGGCTTCGCAACGCGCGTTTCTCAATGAACGAAAGCGATGCCGTGGAGCTTCCAATGTCGCTATCGGGCTAA

Coding sequence (CDS)

ATGATAAGAAAACAAGAATTACGAACTACAGAAAACTTTGTTAATAGAATAACGAACTTCGTTCAGTCAGCGAACACGCAAGCCTGCGGCGGCGGTGAGCCGGAATCCCAAAAAGAGAACCAATTAAAAAATTGGAGCTCTGAACCGCTGAGAGATTGGGAACGGCGAAGGCGGGGTTTCGAGAGGCTTCGCAACGCGCGTTTCTCAATGAACGAAAGCGATGCCGTGGAGCTTCCAATGTCGCTATCGGGCTAA

Protein sequence

MIRKQELRTTENFVNRITNFVQSANTQACGGGEPESQKENQLKNWSSEPLRDWERRRRGFERLRNARFSMNESDAVELPMSLSG*

Homology

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BLAST of CSPI03G44330 vs. ExPASy TrEMBL
Match: A0A0A0LDR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G880020 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.5e-37
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MIRKQELRTTENFVNRITNFVQSANTQACGGGEPESQKENQLKNWSSEPLRDWERRRRGF 60
          MIRKQELRTTENFVNRITNFVQSANTQACGG EPESQKENQLKNWSSE LRDW+RRRRGF
Sbjct: 1  MIRKQELRTTENFVNRITNFVQSANTQACGGDEPESQKENQLKNWSSEQLRDWQRRRRGF 60

Query: 61 ERLRNARFSMNESDAVELPMSLSG 85
          ERLRNARFSMNESDAVELPMSLSG
Sbjct: 61 ERLRNARFSMNESDAVELPMSLSG 84

The following BLAST results are available for this feature:

BLAST of CSPI03G44330 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G44330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDR7	7.5e-37	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G880020 PE=4 SV=1	[more]

BLAST of CSPI03G44330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI03G44330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G44330.1	CSPI03G44330.1	mRNA